ISMysp5
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008146 | ND | Mycobacterium sp. | Mycobacterium sp. MCS |
DNA section
IS Length : 1117 bp
Ends
IR Length : 31/39
IRL : TGTGATGTCCAGGGAGGTTGTCCCGTTTTGTATCGGTGAGCCTGTGTGAC
IRR : TGTGATGTCCAGGGAGGTTGGTCAGTCGGGTGACCGGTGGCTGACCTCCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCCGGCGACT | TCTAGG | GGTCAGCGGG | 6 |
DNA sequence
TGTGATGTCCAGGGAGGTTGTCCCGTTTTGTATCGGTGAGCCTGTGTGACAGGGAAGGCCTCCGGTTGTGAAGTGGAGCTGTCTAGGAACCGCTTCACCA
ACCAGGAGGCCTTCGTGTCCCACGCTAACGCTGCATTGACCCCACGCGCACGATTGAGGCTTGCGAGGCTCGTCGTCGAAACGGGCTGGACCTATGCCGC
AGCGGCCAAGATGTTCATGGTTTCACCGCGAACTGCCAAGAAATGGGCCGATCGCTTCCGCGCCGAAGGCACGGCTGGGATGGTCGACCGCAGCTCACGG
CCGCACCACAGTCCCACCAAGACCAGTCAGCAGGTGATGCGGCGGATCGTCGACGTGCGGTGGCGCCAGCGGCTGGGACCGGTGCAGATCGCCGGCCAGC
TCACCATGCCGGCCTCGACCGTGCACGCGGTGTTGACCCGGTGCCGAATCAACCGCCTGTCCTACATCGACCGGGTCACCGGCGAACCCTTGCGGCGTTA
TGAGCACGCTCATCCGGGCTCGTTGATCCACGTCGACGTCACCAAGTTCGCCAACATTCCCGACGGCGGCGGACACAAGTTCCTCAGTCGAGAACACGGC
GGACGCAACAGACGACGGACCGCGCATCGGACCGGCGATCGCGGTGATCGCACCAAGAACTGGCGCCCGATAATCGGAACCGCGTTCGTGCACACAGTGA
TCGATGATCACTCTCGGATGGCCTATGCCGAGATCTGCACCGACGAGAAGGCCGCTACCGCGGTCGCCGTGTTGCAGCGGGCGGTGGCGTGGTTCTCCGA
ACGCGGCGTGACCGTTGAGCGCGTCCTATCGGACAACGGGTCGGCCTACCGGTCCTACGCCTGGCGCGATGCCTGCACCCAACTACACATCACCCCCAAG
CGAACCCGCCCGTACAGGCCGCAGACCAACGGCAAGATCGAACGATTCCACCGGACCCTGGCCGACGGCTGGGCCTACGCCCACTTCTACGAATCCACCG
AACAACGCAACACCGCGCTACCGGACTGGCTGCACTTCTACAATCACCACCGAGCCCACTCCGCCATCGGAGGTCAGCCACCGGTCACCCGACTGACCAA
CCTCCCTGGACATCACA
ACCAGGAGGCCTTCGTGTCCCACGCTAACGCTGCATTGACCCCACGCGCACGATTGAGGCTTGCGAGGCTCGTCGTCGAAACGGGCTGGACCTATGCCGC
AGCGGCCAAGATGTTCATGGTTTCACCGCGAACTGCCAAGAAATGGGCCGATCGCTTCCGCGCCGAAGGCACGGCTGGGATGGTCGACCGCAGCTCACGG
CCGCACCACAGTCCCACCAAGACCAGTCAGCAGGTGATGCGGCGGATCGTCGACGTGCGGTGGCGCCAGCGGCTGGGACCGGTGCAGATCGCCGGCCAGC
TCACCATGCCGGCCTCGACCGTGCACGCGGTGTTGACCCGGTGCCGAATCAACCGCCTGTCCTACATCGACCGGGTCACCGGCGAACCCTTGCGGCGTTA
TGAGCACGCTCATCCGGGCTCGTTGATCCACGTCGACGTCACCAAGTTCGCCAACATTCCCGACGGCGGCGGACACAAGTTCCTCAGTCGAGAACACGGC
GGACGCAACAGACGACGGACCGCGCATCGGACCGGCGATCGCGGTGATCGCACCAAGAACTGGCGCCCGATAATCGGAACCGCGTTCGTGCACACAGTGA
TCGATGATCACTCTCGGATGGCCTATGCCGAGATCTGCACCGACGAGAAGGCCGCTACCGCGGTCGCCGTGTTGCAGCGGGCGGTGGCGTGGTTCTCCGA
ACGCGGCGTGACCGTTGAGCGCGTCCTATCGGACAACGGGTCGGCCTACCGGTCCTACGCCTGGCGCGATGCCTGCACCCAACTACACATCACCCCCAAG
CGAACCCGCCCGTACAGGCCGCAGACCAACGGCAAGATCGAACGATTCCACCGGACCCTGGCCGACGGCTGGGCCTACGCCCACTTCTACGAATCCACCG
AACAACGCAACACCGCGCTACCGGACTGGCTGCACTTCTACAATCACCACCGAGCCCACTCCGCCATCGGAGGTCAGCCACCGGTCACCCGACTGACCAA
CCTCCCTGGACATCACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1177 bp | 358 aa | 46 | 1222 | + | No |
Chemistry : DDE
ORF sequence :
MTGKASGCEVELSRNRFTNQEAFVSHANAALTPRARLRLARLVVETGWTYAAAAKMFMVSPRTAKKWADRFRAEGTAGMVDRSSRPHHSPTKTSQQVMRR
IVDVRWRQRLGPVQIAGQLTMPASTVHAVLTRCRINRLSYIDRVTGEPLRRYEHAHPGSLIHVDVTKFANIPDGGGHKFLSREHGGRNRRRTAHRTGDRG
DRTKNWRPIIGTAFVHTVIDDHSRMAYAEICTDEKAATAVAVLQRAVAWFSERGVTVERVLSDNGSAYRSYAWRDACTQLHITPKRTRPYRPQTNGKIER
FHRTLADGWAYAHFYESTEQRNTALPDWLHFYNHHRAHSAIGGQPPVTRLTNLPGHHI
IVDVRWRQRLGPVQIAGQLTMPASTVHAVLTRCRINRLSYIDRVTGEPLRRYEHAHPGSLIHVDVTKFANIPDGGGHKFLSREHGGRNRRRTAHRTGDRG
DRTKNWRPIIGTAFVHTVIDDHSRMAYAEICTDEKAATAVAVLQRAVAWFSERGVTVERVLSDNGSAYRSYAWRDACTQLHITPKRTRPYRPQTNGKIER
FHRTLADGWAYAHFYESTEQRNTALPDWLHFYNHHRAHSAIGGQPPVTRLTNLPGHHI
Blast result :
Comments
ISMysp5 is 80% aa similar to ISLxx4. The Stop Codon is in the DR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Miller,C.D., Hughes,J.E., Anderson,A.J., Sims,R.C. and Richardson,P.(2006) Direct submission GenBank.