ISRhsp3

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009049 ND Rhodobacter sphaeroides
Rhodobacter sphaeroides ATCC 17029
DNA section
IS Length : 1104 bp

Ends


IR Length : 17/18

IRL : TATCCACTTAACCTTCTTTCCGTGCTAATCTTGGGAAGGAGGATCGGTTC
IRR : TGTCCACTTAACCTTCTTGACTGACGAATGACATGACGGTCTCGACCGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCCATCAGCGTGGACACAT0

DNA sequence

TATCCACTTAACCTTCTTTCCGTGCTAATCTTGGGAAGGAGGATCGGTTCATGGACCAGTCGACGAAGGCTCCGAAGGTGCGGAAGCGCGACCCGGACAC
GAAGCTGGCTCAGCACCGCCTGAGCGTGCTGGAGTTGGCGAAGGAACTCGGCAACGTCGCCGAGGCCTGTCGGCAGCGGGGGTTGGACCGGACCAGCTTC
TACGAGTGGAAGCGGCGGTTTCAGACTCAAGGCTTCGAGGGGCTCAAGGACCTGCCGCCGATCCACAAGAGCCACCCGCAGTCGACGCCCCCGGAGACGG
TGGCGCGGATCAAGACTCTGGCGCTCGCCCATCCGGCCTATGGCTGCAACCGGTTCGAAGCGATGCTGGCGCTGGAGGGCATCCGGGTCTCGTCGATCAC
CATCCAGAAGATCCTGAACGAGAACGGTCTGGGCACGAAGTCCGACCGCTGGCTGGCGCTGGAGCAGGCCAACGCTGAAAAGAGGATCGAGTTGACCGCG
GAGCAGGCCGCCTTCATCGAGAAGCTGAACCCGTGCTTTCGGGAAAGGCATGTGGAATCAAGCGCCCCCGGCGAACTCCTCTCCGCCGATACCTTCTTCG
TCGGCGCGCTCAAGGGGATCGGTCGGGTCTACCTGCACGCTGTCGTCGACACCTTCGGCTCCTACGCCTTCGGGTTCCTGCACGTCTCCAAGCAACCCGA
GGCGGCGGTGGCGGTGCTGCACAACGACGTGCTGCCGTTCTACCGCAACCTGGATCTGCCCGTCGGCGCGGTGCTGACCGACAACGGCCGCGAGTTCTGC
GGGACGGAGCGGCATCCTTACGAGCTCTATCTCGACCTCAACGGCATCGAGCACCGCCGAACCCGCGTCCGGACGCCCAAGACGAACGGCTTCGTCGAGC
GCTTCAACGGCACCATCCTGGACGAGTTCTTCCGGGTCGCGATGCGCGACAATTTCTACGAAAGCGTAGAGGCCCTGCAGGCCGATCTCGACGCCTGGCT
CGTCCACTACAATACCGAACGGCCACATCTCGGCTACCGAAACATGGGCCGTCGACCGGTCGAGACCGTCATGTCATTCGTCAGTCAAGAAGGTTAAGTG
GACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1047 bp348 aa511097+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDQSTKAPKVRKRDPDTKLAQHRLSVLELAKELGNVAEACRQRGLDRTSFYEWKRRFQTQGFEGLKDLPPIHKSHPQSTPPETVARIKTLALAHPAYGCN
RFEAMLALEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLNPCFRERHVESSAPGELLSADTFFVGALKGIGRVYLHAVVD
TFGSYAFGFLHVSKQPEAAVAVLHNDVLPFYRNLDLPVGAVLTDNGREFCGTERHPYELYLDLNGIEHRRTRVRTPKTNGFVERFNGTILDEFFRVAMRD
NFYESVEALQADLDAWLVHYNTERPHLGYRNMGRRPVETVMSFVSQEG

 

Blast result :
Comments
ISRhsp3 is 57% (ORF)aa similar to ISVvu4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S.(2007) Direct Submission GenBank