ISRhsp3
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009049 | ND | Rhodobacter sphaeroides | Rhodobacter sphaeroides ATCC 17029 |
DNA section
IS Length : 1104 bp
Ends
IR Length : 17/18
IRL : TATCCACTTAACCTTCTTTCCGTGCTAATCTTGGGAAGGAGGATCGGTTC
IRR : TGTCCACTTAACCTTCTTGACTGACGAATGACATGACGGTCTCGACCGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCCATCAGC | GTGGACACAT | 0 |
DNA sequence
TATCCACTTAACCTTCTTTCCGTGCTAATCTTGGGAAGGAGGATCGGTTCATGGACCAGTCGACGAAGGCTCCGAAGGTGCGGAAGCGCGACCCGGACAC
GAAGCTGGCTCAGCACCGCCTGAGCGTGCTGGAGTTGGCGAAGGAACTCGGCAACGTCGCCGAGGCCTGTCGGCAGCGGGGGTTGGACCGGACCAGCTTC
TACGAGTGGAAGCGGCGGTTTCAGACTCAAGGCTTCGAGGGGCTCAAGGACCTGCCGCCGATCCACAAGAGCCACCCGCAGTCGACGCCCCCGGAGACGG
TGGCGCGGATCAAGACTCTGGCGCTCGCCCATCCGGCCTATGGCTGCAACCGGTTCGAAGCGATGCTGGCGCTGGAGGGCATCCGGGTCTCGTCGATCAC
CATCCAGAAGATCCTGAACGAGAACGGTCTGGGCACGAAGTCCGACCGCTGGCTGGCGCTGGAGCAGGCCAACGCTGAAAAGAGGATCGAGTTGACCGCG
GAGCAGGCCGCCTTCATCGAGAAGCTGAACCCGTGCTTTCGGGAAAGGCATGTGGAATCAAGCGCCCCCGGCGAACTCCTCTCCGCCGATACCTTCTTCG
TCGGCGCGCTCAAGGGGATCGGTCGGGTCTACCTGCACGCTGTCGTCGACACCTTCGGCTCCTACGCCTTCGGGTTCCTGCACGTCTCCAAGCAACCCGA
GGCGGCGGTGGCGGTGCTGCACAACGACGTGCTGCCGTTCTACCGCAACCTGGATCTGCCCGTCGGCGCGGTGCTGACCGACAACGGCCGCGAGTTCTGC
GGGACGGAGCGGCATCCTTACGAGCTCTATCTCGACCTCAACGGCATCGAGCACCGCCGAACCCGCGTCCGGACGCCCAAGACGAACGGCTTCGTCGAGC
GCTTCAACGGCACCATCCTGGACGAGTTCTTCCGGGTCGCGATGCGCGACAATTTCTACGAAAGCGTAGAGGCCCTGCAGGCCGATCTCGACGCCTGGCT
CGTCCACTACAATACCGAACGGCCACATCTCGGCTACCGAAACATGGGCCGTCGACCGGTCGAGACCGTCATGTCATTCGTCAGTCAAGAAGGTTAAGTG
GACA
GAAGCTGGCTCAGCACCGCCTGAGCGTGCTGGAGTTGGCGAAGGAACTCGGCAACGTCGCCGAGGCCTGTCGGCAGCGGGGGTTGGACCGGACCAGCTTC
TACGAGTGGAAGCGGCGGTTTCAGACTCAAGGCTTCGAGGGGCTCAAGGACCTGCCGCCGATCCACAAGAGCCACCCGCAGTCGACGCCCCCGGAGACGG
TGGCGCGGATCAAGACTCTGGCGCTCGCCCATCCGGCCTATGGCTGCAACCGGTTCGAAGCGATGCTGGCGCTGGAGGGCATCCGGGTCTCGTCGATCAC
CATCCAGAAGATCCTGAACGAGAACGGTCTGGGCACGAAGTCCGACCGCTGGCTGGCGCTGGAGCAGGCCAACGCTGAAAAGAGGATCGAGTTGACCGCG
GAGCAGGCCGCCTTCATCGAGAAGCTGAACCCGTGCTTTCGGGAAAGGCATGTGGAATCAAGCGCCCCCGGCGAACTCCTCTCCGCCGATACCTTCTTCG
TCGGCGCGCTCAAGGGGATCGGTCGGGTCTACCTGCACGCTGTCGTCGACACCTTCGGCTCCTACGCCTTCGGGTTCCTGCACGTCTCCAAGCAACCCGA
GGCGGCGGTGGCGGTGCTGCACAACGACGTGCTGCCGTTCTACCGCAACCTGGATCTGCCCGTCGGCGCGGTGCTGACCGACAACGGCCGCGAGTTCTGC
GGGACGGAGCGGCATCCTTACGAGCTCTATCTCGACCTCAACGGCATCGAGCACCGCCGAACCCGCGTCCGGACGCCCAAGACGAACGGCTTCGTCGAGC
GCTTCAACGGCACCATCCTGGACGAGTTCTTCCGGGTCGCGATGCGCGACAATTTCTACGAAAGCGTAGAGGCCCTGCAGGCCGATCTCGACGCCTGGCT
CGTCCACTACAATACCGAACGGCCACATCTCGGCTACCGAAACATGGGCCGTCGACCGGTCGAGACCGTCATGTCATTCGTCAGTCAAGAAGGTTAAGTG
GACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1047 bp | 348 aa | 51 | 1097 | + | No |
Chemistry : DDE
ORF sequence :
MDQSTKAPKVRKRDPDTKLAQHRLSVLELAKELGNVAEACRQRGLDRTSFYEWKRRFQTQGFEGLKDLPPIHKSHPQSTPPETVARIKTLALAHPAYGCN
RFEAMLALEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLNPCFRERHVESSAPGELLSADTFFVGALKGIGRVYLHAVVD
TFGSYAFGFLHVSKQPEAAVAVLHNDVLPFYRNLDLPVGAVLTDNGREFCGTERHPYELYLDLNGIEHRRTRVRTPKTNGFVERFNGTILDEFFRVAMRD
NFYESVEALQADLDAWLVHYNTERPHLGYRNMGRRPVETVMSFVSQEG
RFEAMLALEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLNPCFRERHVESSAPGELLSADTFFVGALKGIGRVYLHAVVD
TFGSYAFGFLHVSKQPEAAVAVLHNDVLPFYRNLDLPVGAVLTDNGREFCGTERHPYELYLDLNGIEHRRTRVRTPKTNGFVERFNGTILDEFFRVAMRD
NFYESVEALQADLDAWLVHYNTERPHLGYRNMGRRPVETVMSFVSQEG
Blast result :
Comments
ISRhsp3 is 57% (ORF)aa similar to ISVvu4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S.(2007) Direct Submission GenBank