ISVch6

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AAUU01000088 ND Vibrio cholerae
Vibrio cholerae MZO-3
DNA section
IS Length : 1088 bp

Ends


IR Length : 16/22

IRL : TACCAGTGATCATTGAAGATGCTTGATTTCTCATAAAATCAGGATCATGC
IRR : TACCCGTTCAACTTGAAGATGCAGGTTTCAATATCTGAAAATTGTCCGTA

Insertion site


Left flankDirect repeatRight flankDR Length
GATAGAAACGCTTTGTTATATTGGCATCGT2

DNA sequence

TACCAGTGATCATTGAAGATGCTTGATTTCTCATAAAATCAGGATCATGCTACGCTCCATGAAAATAACACTGACTCCCCAACAGAAACTACAACTCGAA
GAGATGCACGATTCCACTCGTGATGGTCGAGTACGTGACCACATCAAAGCACTTGCGTCTGAAGGTTGGAGTCAGGCGATGATTTCTCAAGCTCTTCGCA
TTCACGAATCGACTGTTGCACGTCACCTCAGCGACTACGTGCTTTCTGAAAAACTCAAGCCTGAAAATGGTGGAAGCCAAAGTAAGCTTTCTGCTACCCA
AACCATGCATCTAATCGAGCATTTGACTGAAAAAACTTATTTCCATACCCATCAAATCGTTGCTTACGTCGAGGCTGAATTCGCCGTTCGCTACACAGTT
GCAGGCATGAATAAGTGGTTACATCACCACGGTTTTTCATACAAAAAGCCCAAAGGTGTACCGCACAAGCTAAAACCTGAAGAGCAGCAAGCATTTATCG
AGTATTACAACGAGGTGCTTAAGTCCAATGATGCGCCAGTGCTTTTCATGGATGCTGTTCATCCGACTCAATCAACAAAGCTCAGCTATGGCTGGATCCG
TAAGGGGCAGGATAAGCTTATTGAAACGACAGGTAGTCGTACTCGAGTGAATTTAATCGGTGCTCTACCCCTGAAAGAGATTAGCGACACGATCACCGAT
ACTTATGAGACGATAGATAGCGAGAGTATTGTTCGCTTCTTTTGGAAGCTCAAGAAAGAGTGTTATCCACTAGAGCAAACCGTGCATATTGTGCTTGATG
GCGCAGCCTATCATCGGTCAGAAATGGTGAAGAATGCGGCAAAAGTGCTCAATATAGAGCTTCATTACTTGCCACCATACAGTCCAAACTTAAATCCGAT
AGAGCGGCTTTGGAAAGTAATGAATGAGCATGTGAGGAACAATGTCTATTTTCCCTCCAAAGCAGCATTCACCTCTGCTATCAAAAAGTTTTTTGATGTG
ACGCTAGCAGAAGTTGCAGGCTCACTCGCATCCAGAATTACGGACAATTTTCAGATATTGAAACCTGCATCTTCAAGTTGAACGGGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa591081+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKITLTPQQKLQLEEMHDSTRDGRVRDHIKALASEGWSQAMISQALRIHESTVARHLSDYVLSEKLKPENGGSQSKLSATQTMHLIEHLTEKTYFHTHQI
VAYVEAEFAVRYTVAGMNKWLHHHGFSYKKPKGVPHKLKPEEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWIRKGQDKLIETTGSRTRVNLI
GALPLKEISDTITDTYETIDSESIVRFFWKLKKECYPLEQTVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS
KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS

 

Blast result :
Comments
ISvch6 is 73% aa similar to ISPlu8.
References
1] Heidelberg,J. and Sebastian,Y. (2006) Direct submission Genbank.