ISVch6
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AAUU01000088 | ND | Vibrio cholerae | Vibrio cholerae MZO-3 |
DNA section
IS Length : 1088 bp
Ends
IR Length : 16/22
IRL : TACCAGTGATCATTGAAGATGCTTGATTTCTCATAAAATCAGGATCATGC
IRR : TACCCGTTCAACTTGAAGATGCAGGTTTCAATATCTGAAAATTGTCCGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATAGAAACGCTTTGT | TA | TATTGGCATCGT | 2 |
DNA sequence
TACCAGTGATCATTGAAGATGCTTGATTTCTCATAAAATCAGGATCATGCTACGCTCCATGAAAATAACACTGACTCCCCAACAGAAACTACAACTCGAA
GAGATGCACGATTCCACTCGTGATGGTCGAGTACGTGACCACATCAAAGCACTTGCGTCTGAAGGTTGGAGTCAGGCGATGATTTCTCAAGCTCTTCGCA
TTCACGAATCGACTGTTGCACGTCACCTCAGCGACTACGTGCTTTCTGAAAAACTCAAGCCTGAAAATGGTGGAAGCCAAAGTAAGCTTTCTGCTACCCA
AACCATGCATCTAATCGAGCATTTGACTGAAAAAACTTATTTCCATACCCATCAAATCGTTGCTTACGTCGAGGCTGAATTCGCCGTTCGCTACACAGTT
GCAGGCATGAATAAGTGGTTACATCACCACGGTTTTTCATACAAAAAGCCCAAAGGTGTACCGCACAAGCTAAAACCTGAAGAGCAGCAAGCATTTATCG
AGTATTACAACGAGGTGCTTAAGTCCAATGATGCGCCAGTGCTTTTCATGGATGCTGTTCATCCGACTCAATCAACAAAGCTCAGCTATGGCTGGATCCG
TAAGGGGCAGGATAAGCTTATTGAAACGACAGGTAGTCGTACTCGAGTGAATTTAATCGGTGCTCTACCCCTGAAAGAGATTAGCGACACGATCACCGAT
ACTTATGAGACGATAGATAGCGAGAGTATTGTTCGCTTCTTTTGGAAGCTCAAGAAAGAGTGTTATCCACTAGAGCAAACCGTGCATATTGTGCTTGATG
GCGCAGCCTATCATCGGTCAGAAATGGTGAAGAATGCGGCAAAAGTGCTCAATATAGAGCTTCATTACTTGCCACCATACAGTCCAAACTTAAATCCGAT
AGAGCGGCTTTGGAAAGTAATGAATGAGCATGTGAGGAACAATGTCTATTTTCCCTCCAAAGCAGCATTCACCTCTGCTATCAAAAAGTTTTTTGATGTG
ACGCTAGCAGAAGTTGCAGGCTCACTCGCATCCAGAATTACGGACAATTTTCAGATATTGAAACCTGCATCTTCAAGTTGAACGGGTA
GAGATGCACGATTCCACTCGTGATGGTCGAGTACGTGACCACATCAAAGCACTTGCGTCTGAAGGTTGGAGTCAGGCGATGATTTCTCAAGCTCTTCGCA
TTCACGAATCGACTGTTGCACGTCACCTCAGCGACTACGTGCTTTCTGAAAAACTCAAGCCTGAAAATGGTGGAAGCCAAAGTAAGCTTTCTGCTACCCA
AACCATGCATCTAATCGAGCATTTGACTGAAAAAACTTATTTCCATACCCATCAAATCGTTGCTTACGTCGAGGCTGAATTCGCCGTTCGCTACACAGTT
GCAGGCATGAATAAGTGGTTACATCACCACGGTTTTTCATACAAAAAGCCCAAAGGTGTACCGCACAAGCTAAAACCTGAAGAGCAGCAAGCATTTATCG
AGTATTACAACGAGGTGCTTAAGTCCAATGATGCGCCAGTGCTTTTCATGGATGCTGTTCATCCGACTCAATCAACAAAGCTCAGCTATGGCTGGATCCG
TAAGGGGCAGGATAAGCTTATTGAAACGACAGGTAGTCGTACTCGAGTGAATTTAATCGGTGCTCTACCCCTGAAAGAGATTAGCGACACGATCACCGAT
ACTTATGAGACGATAGATAGCGAGAGTATTGTTCGCTTCTTTTGGAAGCTCAAGAAAGAGTGTTATCCACTAGAGCAAACCGTGCATATTGTGCTTGATG
GCGCAGCCTATCATCGGTCAGAAATGGTGAAGAATGCGGCAAAAGTGCTCAATATAGAGCTTCATTACTTGCCACCATACAGTCCAAACTTAAATCCGAT
AGAGCGGCTTTGGAAAGTAATGAATGAGCATGTGAGGAACAATGTCTATTTTCCCTCCAAAGCAGCATTCACCTCTGCTATCAAAAAGTTTTTTGATGTG
ACGCTAGCAGAAGTTGCAGGCTCACTCGCATCCAGAATTACGGACAATTTTCAGATATTGAAACCTGCATCTTCAAGTTGAACGGGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 59 | 1081 | + | No |
Chemistry : DDE
ORF sequence :
MKITLTPQQKLQLEEMHDSTRDGRVRDHIKALASEGWSQAMISQALRIHESTVARHLSDYVLSEKLKPENGGSQSKLSATQTMHLIEHLTEKTYFHTHQI
VAYVEAEFAVRYTVAGMNKWLHHHGFSYKKPKGVPHKLKPEEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWIRKGQDKLIETTGSRTRVNLI
GALPLKEISDTITDTYETIDSESIVRFFWKLKKECYPLEQTVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS
KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS
VAYVEAEFAVRYTVAGMNKWLHHHGFSYKKPKGVPHKLKPEEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWIRKGQDKLIETTGSRTRVNLI
GALPLKEISDTITDTYETIDSESIVRFFWKLKKECYPLEQTVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS
KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS
Blast result :
Comments
ISvch6 is 73% aa similar to ISPlu8.
References
1] Heidelberg,J. and Sebastian,Y. (2006) Direct submission Genbank.