ISVvu4
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005140 | ND | Vibrio vulnificus | Vibrio vulnificus YJ016 chromosome I Vibrio vulnificus YJ016 chromosome II |
DNA section
IS Length : 1206 bp
Ends
IR Length : 23/29
IRL : TGTATTAGTTCCGACTAGATCTGACACTTCAATTTGAAAAGAAGAGAGTT
IRR : TGTACTAATTCAGACCTGATCTGACAGTTACCCACTTTTCGACTTGGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTTCTTCGCC | TCTAATG | TAATGCGTTTTTG | 7 |
DNA sequence
TGTATTAGTTCCGACTAGATCTGACACTTCAATTTGAAAAGAAGAGAGTTACCCACTTTGATTAAAGGTGCTTAATCACTAATCAAAGACAAAAAGAGGT
AACTCTCATGCTTCATACTAGCAATCCAATTATCAAACACAAAGCGGGCCTTCTCAATCTTGCAGAAGAACTCGGTAATGTATCTAGAGCCTGTAAGGTT
ATGGGGGTATCAAGAGATACTTTCTACCGTTATCAAGAGTTGGTTGAGACGGGGGGTATTGATGCTCTGATTAACCGTAGCCGAAGAGCACCGAATTTGA
AGAACCGTGTTGATAGTGAAACTGAGCAAGCCGTTATCAAATACGCCATCGACTTCCCAGCTCATGGACAAGTTAGAACGAGTAATGAATTACGTAAATT
GGGAGTGTTTATCTCTCCAAGTGGCGTACGCTCAATCTGGCTTCGCAATGACCTAGAGAACTTCAAGAAACGTCTTATCGCACTGGAGAAACAGGTCGCA
GAGAACGGTATTATCCTCACAGACGAGCAAGTTGCGGCTCTTGAGCGTAAGAAGCACGATGATGAAGCTTGTGGTGAGATAGAAACAGCGCATCCAGGTT
ATCTCGGCTCTCAAGACACATTCTATGTTGGCAACTTGAAAGGTGTTGGGCGCATCTATCAACAAACCTTCGTTGATACCTACAGTAAAGTCGCCTTTGC
CAAGCTCTACACAACGAAAACACCAATCACCGCAGCGGATATATTGAATGATAAGGTTCTACCGTTCTTTGAGACGCATGAACTGCCAATGCTGCGAATC
TTGACTGACCGAGGCACTGAATACTGTGGTCGTGTTGAGCAGCACGATTACCAGCTCTACCTAGCCATTAATGATATCGACCACACGAAAACTAAAGCGA
TGTCACCACAAACAAATGGTATCTGCGAGCGCTTCCACAAGACCGTATTGAATGAGTTCTACCAAGTGACATTCAGAAAGAAACTGTATGGTTCTATCGA
AGAGTTGCAGAAAGATCTGGACGAATGGATGGACTACTATAACAATCACCGTACTCATCAAGGAAAAATGTGCTGTGGCAGAACGCCGATAGAAACATTA
GAGGATGGGAAATCAATCTGGGCTGAAAAGAATCTAGCCCAGATATAATCTGACAGGCACCAAGTCGAAAAGTGGGTAACTGTCAGATCAGGTCTGAATT
AGTACA
AACTCTCATGCTTCATACTAGCAATCCAATTATCAAACACAAAGCGGGCCTTCTCAATCTTGCAGAAGAACTCGGTAATGTATCTAGAGCCTGTAAGGTT
ATGGGGGTATCAAGAGATACTTTCTACCGTTATCAAGAGTTGGTTGAGACGGGGGGTATTGATGCTCTGATTAACCGTAGCCGAAGAGCACCGAATTTGA
AGAACCGTGTTGATAGTGAAACTGAGCAAGCCGTTATCAAATACGCCATCGACTTCCCAGCTCATGGACAAGTTAGAACGAGTAATGAATTACGTAAATT
GGGAGTGTTTATCTCTCCAAGTGGCGTACGCTCAATCTGGCTTCGCAATGACCTAGAGAACTTCAAGAAACGTCTTATCGCACTGGAGAAACAGGTCGCA
GAGAACGGTATTATCCTCACAGACGAGCAAGTTGCGGCTCTTGAGCGTAAGAAGCACGATGATGAAGCTTGTGGTGAGATAGAAACAGCGCATCCAGGTT
ATCTCGGCTCTCAAGACACATTCTATGTTGGCAACTTGAAAGGTGTTGGGCGCATCTATCAACAAACCTTCGTTGATACCTACAGTAAAGTCGCCTTTGC
CAAGCTCTACACAACGAAAACACCAATCACCGCAGCGGATATATTGAATGATAAGGTTCTACCGTTCTTTGAGACGCATGAACTGCCAATGCTGCGAATC
TTGACTGACCGAGGCACTGAATACTGTGGTCGTGTTGAGCAGCACGATTACCAGCTCTACCTAGCCATTAATGATATCGACCACACGAAAACTAAAGCGA
TGTCACCACAAACAAATGGTATCTGCGAGCGCTTCCACAAGACCGTATTGAATGAGTTCTACCAAGTGACATTCAGAAAGAAACTGTATGGTTCTATCGA
AGAGTTGCAGAAAGATCTGGACGAATGGATGGACTACTATAACAATCACCGTACTCATCAAGGAAAAATGTGCTGTGGCAGAACGCCGATAGAAACATTA
GAGGATGGGAAATCAATCTGGGCTGAAAAGAATCTAGCCCAGATATAATCTGACAGGCACCAAGTCGAAAAGTGGGTAACTGTCAGATCAGGTCTGAATT
AGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1041 bp | 346 aa | 108 | 1148 | + | No |
Chemistry : DDE
ORF sequence :
MLHTSNPIIKHKAGLLNLAEELGNVSRACKVMGVSRDTFYRYQELVETGGIDALINRSRRAPNLKNRVDSETEQAVIKYAIDFPAHGQVRTSNELRKLGV
FISPSGVRSIWLRNDLENFKKRLIALEKQVAENGIILTDEQVAALERKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAFAKL
YTTKTPITAADILNDKVLPFFETHELPMLRILTDRGTEYCGRVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTVLNEFYQVTFRKKLYGSIEEL
QKDLDEWMDYYNNHRTHQGKMCCGRTPIETLEDGKSIWAEKNLAQI
FISPSGVRSIWLRNDLENFKKRLIALEKQVAENGIILTDEQVAALERKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAFAKL
YTTKTPITAADILNDKVLPFFETHELPMLRILTDRGTEYCGRVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTVLNEFYQVTFRKKLYGSIEEL
QKDLDEWMDYYNNHRTHQGKMCCGRTPIETLEDGKSIWAEKNLAQI
Blast result :
Comments
ISVvu4 is 83% aa similar to ISSod13.
References
1] Chen,C.Y., Wu,K.M., Chang,Y.C., Chang,C.H., Tsai,H.C., Liao,T.L., Liu,Y.M., Chen,H.J., Shen,A.B., Li,J.C., Su,T.L., Shao,C.P., Lee,C.T., Hor,L.I. and Tsai,S.F. (2003) Genome Res. 13 (12), 2577-2587