ISVvu4

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005140 ND Vibrio vulnificus
Vibrio vulnificus YJ016 chromosome I
Vibrio vulnificus YJ016 chromosome II
DNA section
IS Length : 1206 bp

Ends


IR Length : 23/29

IRL : TGTATTAGTTCCGACTAGATCTGACACTTCAATTTGAAAAGAAGAGAGTT
IRR : TGTACTAATTCAGACCTGATCTGACAGTTACCCACTTTTCGACTTGGTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTTCTTCGCCTCTAATGTAATGCGTTTTTG7

DNA sequence

TGTATTAGTTCCGACTAGATCTGACACTTCAATTTGAAAAGAAGAGAGTTACCCACTTTGATTAAAGGTGCTTAATCACTAATCAAAGACAAAAAGAGGT
AACTCTCATGCTTCATACTAGCAATCCAATTATCAAACACAAAGCGGGCCTTCTCAATCTTGCAGAAGAACTCGGTAATGTATCTAGAGCCTGTAAGGTT
ATGGGGGTATCAAGAGATACTTTCTACCGTTATCAAGAGTTGGTTGAGACGGGGGGTATTGATGCTCTGATTAACCGTAGCCGAAGAGCACCGAATTTGA
AGAACCGTGTTGATAGTGAAACTGAGCAAGCCGTTATCAAATACGCCATCGACTTCCCAGCTCATGGACAAGTTAGAACGAGTAATGAATTACGTAAATT
GGGAGTGTTTATCTCTCCAAGTGGCGTACGCTCAATCTGGCTTCGCAATGACCTAGAGAACTTCAAGAAACGTCTTATCGCACTGGAGAAACAGGTCGCA
GAGAACGGTATTATCCTCACAGACGAGCAAGTTGCGGCTCTTGAGCGTAAGAAGCACGATGATGAAGCTTGTGGTGAGATAGAAACAGCGCATCCAGGTT
ATCTCGGCTCTCAAGACACATTCTATGTTGGCAACTTGAAAGGTGTTGGGCGCATCTATCAACAAACCTTCGTTGATACCTACAGTAAAGTCGCCTTTGC
CAAGCTCTACACAACGAAAACACCAATCACCGCAGCGGATATATTGAATGATAAGGTTCTACCGTTCTTTGAGACGCATGAACTGCCAATGCTGCGAATC
TTGACTGACCGAGGCACTGAATACTGTGGTCGTGTTGAGCAGCACGATTACCAGCTCTACCTAGCCATTAATGATATCGACCACACGAAAACTAAAGCGA
TGTCACCACAAACAAATGGTATCTGCGAGCGCTTCCACAAGACCGTATTGAATGAGTTCTACCAAGTGACATTCAGAAAGAAACTGTATGGTTCTATCGA
AGAGTTGCAGAAAGATCTGGACGAATGGATGGACTACTATAACAATCACCGTACTCATCAAGGAAAAATGTGCTGTGGCAGAACGCCGATAGAAACATTA
GAGGATGGGAAATCAATCTGGGCTGAAAAGAATCTAGCCCAGATATAATCTGACAGGCACCAAGTCGAAAAGTGGGTAACTGTCAGATCAGGTCTGAATT
AGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1041 bp346 aa1081148+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLHTSNPIIKHKAGLLNLAEELGNVSRACKVMGVSRDTFYRYQELVETGGIDALINRSRRAPNLKNRVDSETEQAVIKYAIDFPAHGQVRTSNELRKLGV
FISPSGVRSIWLRNDLENFKKRLIALEKQVAENGIILTDEQVAALERKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAFAKL
YTTKTPITAADILNDKVLPFFETHELPMLRILTDRGTEYCGRVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTVLNEFYQVTFRKKLYGSIEEL
QKDLDEWMDYYNNHRTHQGKMCCGRTPIETLEDGKSIWAEKNLAQI

 

Blast result :
Comments
ISVvu4 is 83% aa similar to ISSod13.
References
1] Chen,C.Y., Wu,K.M., Chang,Y.C., Chang,C.H., Tsai,H.C., Liao,T.L., Liu,Y.M., Chen,H.J., Shen,A.B., Li,J.C., Su,T.L., Shao,C.P., Lee,C.T., Hor,L.I. and Tsai,S.F. (2003) Genome Res. 13 (12), 2577-2587