ISArsp1
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008541 | ND | Arthrobacter sp. | Arthrobacter sp. FB24 plasmid 1 Arthrobacter sp. FB24 |
DNA section
IS Length : 1077 bp
Ends
IR Length : 25
IRL : TGTAATTCCCACGGAGGTTGTGAACAGCGTGGCGTGATGTAAAAAGCGAG
IRR : TGTAATTCCCACGGAGGTTGTGAACGCGGCTGATGGGAGTTTTTCCTCCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCCTCCGGC | TCTAGG | GCTCACTGAA | 6 |
| ATATCCGTGC | GCTAGC | GCACGGATAT | 6 |
DNA sequence
TGTAATTCCCACGGAGGTTGTGAACAGCGTGGCGTGATGTAAAAAGCGAGAGCCTCCGGTATCGATTTGGGTTACCACACTCATCTCGACGCCAGGAGGC
TCTCGTGTCCTACGTTACTCATGCCAACGCCGACCTGACACCCAAAGCCAGGGGAAAGCTCGCCCGGCTGGTCATCGAGCAGGGCTGGACTCTACGCCGG
GCCGCGGAACGGTTCCAGTGCTCACCGGCCACCGCGAAGAAATGGGTGGACCGGTACCGGGCCCGTGGCGAGGACGGCATGGCTGACTTGTCCTCGCGGC
CGCGTCGAAGCCCGAACCGCACTGATGTCCGCACCGAACGGCGGATTCTGGCGCTGCGTTTCACCCGCCGGTGGGGTCCTCACCGGATCGCAGCCCACCT
GCACCTTGCCCGCTCGACCGTGGGAAAGGTCCTGACCCGGTACCGGATGCCCCGGCTGGCCTGCCTGGACCAAGGCACCGGCCTGCCCATCCGCAAGCCG
GCACCCCAACGCTACGAACACGACCATCCCGGGGACCTGGTACACGTGGACATCAAGAAACTCGGACGCATCCCAGACGGCGGCGGGCACCGCGCCCTGG
GACGGGCGGCAGGCCGTAAGAACCGCCGGGCCGGGACCGGCTACGCCTACCTGCACCACGCCGTGGATGACCATTCCCGCCTGGCCTACTCCGAAATACT
CACCGACGAAAAGAAGGAAACCGCCACAGCGTTCTGGTTCCGCGCCGCATCGTTCTTCGCCGCCCACGGCATCACTGTCAGAGCCGTGCTCACCGATAAC
GGCGCTTGCTACCGCTCCAGAGCCTTCACAGCCGCCCTGGGCCCGAACATCAAGCACCGCAGGACTCGGCCCTACCGGCCACAGACCAATGGCAAGGTAG
AACGCTTCAACCGGACCCTCAACACGGAATGGGCCTACGCCCGGCCCTACACATCAGAAGCCGAGCGAGCAGCCACCTACCCCGGTTGGCTACATCAGTA
CAATCATCACAGAACTCATACCGGCATCGGAGGAAAAACTCCCATCAGCCGCGTTCACAACCTCCGTGGGAATTACA
TCTCGTGTCCTACGTTACTCATGCCAACGCCGACCTGACACCCAAAGCCAGGGGAAAGCTCGCCCGGCTGGTCATCGAGCAGGGCTGGACTCTACGCCGG
GCCGCGGAACGGTTCCAGTGCTCACCGGCCACCGCGAAGAAATGGGTGGACCGGTACCGGGCCCGTGGCGAGGACGGCATGGCTGACTTGTCCTCGCGGC
CGCGTCGAAGCCCGAACCGCACTGATGTCCGCACCGAACGGCGGATTCTGGCGCTGCGTTTCACCCGCCGGTGGGGTCCTCACCGGATCGCAGCCCACCT
GCACCTTGCCCGCTCGACCGTGGGAAAGGTCCTGACCCGGTACCGGATGCCCCGGCTGGCCTGCCTGGACCAAGGCACCGGCCTGCCCATCCGCAAGCCG
GCACCCCAACGCTACGAACACGACCATCCCGGGGACCTGGTACACGTGGACATCAAGAAACTCGGACGCATCCCAGACGGCGGCGGGCACCGCGCCCTGG
GACGGGCGGCAGGCCGTAAGAACCGCCGGGCCGGGACCGGCTACGCCTACCTGCACCACGCCGTGGATGACCATTCCCGCCTGGCCTACTCCGAAATACT
CACCGACGAAAAGAAGGAAACCGCCACAGCGTTCTGGTTCCGCGCCGCATCGTTCTTCGCCGCCCACGGCATCACTGTCAGAGCCGTGCTCACCGATAAC
GGCGCTTGCTACCGCTCCAGAGCCTTCACAGCCGCCCTGGGCCCGAACATCAAGCACCGCAGGACTCGGCCCTACCGGCCACAGACCAATGGCAAGGTAG
AACGCTTCAACCGGACCCTCAACACGGAATGGGCCTACGCCCGGCCCTACACATCAGAAGCCGAGCGAGCAGCCACCTACCCCGGTTGGCTACATCAGTA
CAATCATCACAGAACTCATACCGGCATCGGAGGAAAAACTCCCATCAGCCGCGTTCACAACCTCCGTGGGAATTACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 978 bp | 325 aa | 105 | 1082 | + | No |
Chemistry : DDE
ORF sequence :
VSYVTHANADLTPKARGKLARLVIEQGWTLRRAAERFQCSPATAKKWVDRYRARGEDGMADLSSRPRRSPNRTDVRTERRILALRFTRRWGPHRIAAHLH
LARSTVGKVLTRYRMPRLACLDQGTGLPIRKPAPQRYEHDHPGDLVHVDIKKLGRIPDGGGHRALGRAAGRKNRRAGTGYAYLHHAVDDHSRLAYSEILT
DEKKETATAFWFRAASFFAAHGITVRAVLTDNGACYRSRAFTAALGPNIKHRRTRPYRPQTNGKVERFNRTLNTEWAYARPYTSEAERAATYPGWLHQYN
HHRTHTGIGGKTPISRVHNLRGNYI
LARSTVGKVLTRYRMPRLACLDQGTGLPIRKPAPQRYEHDHPGDLVHVDIKKLGRIPDGGGHRALGRAAGRKNRRAGTGYAYLHHAVDDHSRLAYSEILT
DEKKETATAFWFRAASFFAAHGITVRAVLTDNGACYRSRAFTAALGPNIKHRRTRPYRPQTNGKVERFNRTLNTEWAYARPYTSEAERAATYPGWLHQYN
HHRTHTGIGGKTPISRVHNLRGNYI
Blast result :
Comments
ISArsp1 is 79% aa similar to ISMyma6.
The stop codon is in the insertion site.
The stop codon is in the insertion site.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P.US DOE Joint Genome Institute. (2006) Direct submission GenBank.