ISLsp1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DS180871 | ND | Leptospirillum sp. | Leptospirillum sp. Group II UBA |
DNA section
IS Length : 1031 bp
Ends
IR Length : 19/23
IRL : CCTGATTACCTATGATAATCAGCCCGATTTCTGATACCATACAACCTTGA
IRR : CCTGATTACCCATGATCCTCCGCCATCTTTGCAAGACGGTAGGGAAGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGATGAAGACA | TTCCTGTT | TGTACAACCGGA | 8 |
DNA sequence
CCTGATTACCTATGATAATCAGCCCGATTTCTGATACCATACAACCTTGATATCTCAACTATTTACTGGACGGAGGATACCATGGCCAAAAATCGGATCC
AATTCCAGAAAGGGCTGAGTTTCGCCGAATTTCACCGTCAGTATGGAACGGAGGAACAATGCCGGCAAGCCCTGTTCCAGTGGCGCTGGCCTTCGGGGTT
TCGGTGTCCCTCCTGCGAAGGAGACCGGTTCTGTGTGCTTTCCAACGGTCGCTACCAGTGCAACAGCTGCCGTCACCAGGCCTCTCTCACGAGCGGGACG
CTCTTCGCCGGCACCAAGCTGCCGCTCACCGTCTGGTTTCTGGCGATCTACCTCCTGACCCAGAGCAAGAATGCCATGTCGGCACTGGAACTCAAGCGCC
AGCTGGGCGTTTGTTACAATACCGCCTGGTTGTTGAAGCACAAGGTTCTCCAGGTGATGAAAGAACGGGACGATGCACTCCCTTTGTCCGGTCCCGTCCA
GATCGATGACGCCTACTGGGGGGGAGAACGACGCGGCGGCAAACGGGGCCGGGGGGCTCCCGGAAAAACGCCGTTCCTGGCGGCGGTCCAGTGCACCGAA
GAAGGGCGTCCCCTCCGGCTTCGCCTCACCCGGGTCCGGGGGTTCTCCCGACACGAGATCGACTCCTGGGCCCGGAAGCATCTTTCCCCGGACTGCACGG
TAGTCTCCGACGGACTGCCCGCCTTCCGGGGAATGGCCCGGGCGGGCTATGCCCACCAGCCCCAGGTAACGGGAGGAGGGCCGTACAGCGTCAAGAATCC
CGCTTTCCTCTGGGTCAACACGATGCTGGGCAACGTCAAGAATGCCATTCACGGCACCTACCATGCCGTTCGGGAGAAACATCTTCCCCGCTATCTGGCG
GAGTTCTGCTACCGCTTCAACCGCCGGTTCCGGCTGGAAGACCTGCTTCCCCGGTTTGTTTACGTCGCCCTTCGGACACCCCCTCTTCCCTACCGTCTTG
CAAAGATGGCGGAGGATCATGGGTAATCAGG
AATTCCAGAAAGGGCTGAGTTTCGCCGAATTTCACCGTCAGTATGGAACGGAGGAACAATGCCGGCAAGCCCTGTTCCAGTGGCGCTGGCCTTCGGGGTT
TCGGTGTCCCTCCTGCGAAGGAGACCGGTTCTGTGTGCTTTCCAACGGTCGCTACCAGTGCAACAGCTGCCGTCACCAGGCCTCTCTCACGAGCGGGACG
CTCTTCGCCGGCACCAAGCTGCCGCTCACCGTCTGGTTTCTGGCGATCTACCTCCTGACCCAGAGCAAGAATGCCATGTCGGCACTGGAACTCAAGCGCC
AGCTGGGCGTTTGTTACAATACCGCCTGGTTGTTGAAGCACAAGGTTCTCCAGGTGATGAAAGAACGGGACGATGCACTCCCTTTGTCCGGTCCCGTCCA
GATCGATGACGCCTACTGGGGGGGAGAACGACGCGGCGGCAAACGGGGCCGGGGGGCTCCCGGAAAAACGCCGTTCCTGGCGGCGGTCCAGTGCACCGAA
GAAGGGCGTCCCCTCCGGCTTCGCCTCACCCGGGTCCGGGGGTTCTCCCGACACGAGATCGACTCCTGGGCCCGGAAGCATCTTTCCCCGGACTGCACGG
TAGTCTCCGACGGACTGCCCGCCTTCCGGGGAATGGCCCGGGCGGGCTATGCCCACCAGCCCCAGGTAACGGGAGGAGGGCCGTACAGCGTCAAGAATCC
CGCTTTCCTCTGGGTCAACACGATGCTGGGCAACGTCAAGAATGCCATTCACGGCACCTACCATGCCGTTCGGGAGAAACATCTTCCCCGCTATCTGGCG
GAGTTCTGCTACCGCTTCAACCGCCGGTTCCGGCTGGAAGACCTGCTTCCCCGGTTTGTTTACGTCGCCCTTCGGACACCCCCTCTTCCCTACCGTCTTG
CAAAGATGGCGGAGGATCATGGGTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 82 | 1026 | + | No |
Chemistry : DDE
ORF sequence :
MAKNRIQFQKGLSFAEFHRQYGTEEQCRQALFQWRWPSGFRCPSCEGDRFCVLSNGRYQCNSCRHQASLTSGTLFAGTKLPLTVWFLAIYLLTQSKNAMS
ALELKRQLGVCYNTAWLLKHKVLQVMKERDDALPLSGPVQIDDAYWGGERRGGKRGRGAPGKTPFLAAVQCTEEGRPLRLRLTRVRGFSRHEIDSWARKH
LSPDCTVVSDGLPAFRGMARAGYAHQPQVTGGGPYSVKNPAFLWVNTMLGNVKNAIHGTYHAVREKHLPRYLAEFCYRFNRRFRLEDLLPRFVYVALRTP
PLPYRLAKMAEDHG
ALELKRQLGVCYNTAWLLKHKVLQVMKERDDALPLSGPVQIDDAYWGGERRGGKRGRGAPGKTPFLAAVQCTEEGRPLRLRLTRVRGFSRHEIDSWARKH
LSPDCTVVSDGLPAFRGMARAGYAHQPQVTGGGPYSVKNPAFLWVNTMLGNVKNAIHGTYHAVREKHLPRYLAEFCYRFNRRFRLEDLLPRFVYVALRTP
PLPYRLAKMAEDHG
Blast result :
Comments
ISLps1 is 72% aa similar to ISHch1.
References
1] Lo,I., Denef,V.J., VerBerkmoes,N.C., Shah,M., Goltsman,D., DiBartolo,G., Tyson,G., Allen,E.E., Ram,R.J., Detter,J.C., Richardson,P., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2007) Nature In press.