ISLsp1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DS180871 ND Leptospirillum sp.
Leptospirillum sp. Group II UBA
DNA section
IS Length : 1031 bp

Ends


IR Length : 19/23

IRL : CCTGATTACCTATGATAATCAGCCCGATTTCTGATACCATACAACCTTGA
IRR : CCTGATTACCCATGATCCTCCGCCATCTTTGCAAGACGGTAGGGAAGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTGATGAAGACATTCCTGTTTGTACAACCGGA8

DNA sequence

CCTGATTACCTATGATAATCAGCCCGATTTCTGATACCATACAACCTTGATATCTCAACTATTTACTGGACGGAGGATACCATGGCCAAAAATCGGATCC
AATTCCAGAAAGGGCTGAGTTTCGCCGAATTTCACCGTCAGTATGGAACGGAGGAACAATGCCGGCAAGCCCTGTTCCAGTGGCGCTGGCCTTCGGGGTT
TCGGTGTCCCTCCTGCGAAGGAGACCGGTTCTGTGTGCTTTCCAACGGTCGCTACCAGTGCAACAGCTGCCGTCACCAGGCCTCTCTCACGAGCGGGACG
CTCTTCGCCGGCACCAAGCTGCCGCTCACCGTCTGGTTTCTGGCGATCTACCTCCTGACCCAGAGCAAGAATGCCATGTCGGCACTGGAACTCAAGCGCC
AGCTGGGCGTTTGTTACAATACCGCCTGGTTGTTGAAGCACAAGGTTCTCCAGGTGATGAAAGAACGGGACGATGCACTCCCTTTGTCCGGTCCCGTCCA
GATCGATGACGCCTACTGGGGGGGAGAACGACGCGGCGGCAAACGGGGCCGGGGGGCTCCCGGAAAAACGCCGTTCCTGGCGGCGGTCCAGTGCACCGAA
GAAGGGCGTCCCCTCCGGCTTCGCCTCACCCGGGTCCGGGGGTTCTCCCGACACGAGATCGACTCCTGGGCCCGGAAGCATCTTTCCCCGGACTGCACGG
TAGTCTCCGACGGACTGCCCGCCTTCCGGGGAATGGCCCGGGCGGGCTATGCCCACCAGCCCCAGGTAACGGGAGGAGGGCCGTACAGCGTCAAGAATCC
CGCTTTCCTCTGGGTCAACACGATGCTGGGCAACGTCAAGAATGCCATTCACGGCACCTACCATGCCGTTCGGGAGAAACATCTTCCCCGCTATCTGGCG
GAGTTCTGCTACCGCTTCAACCGCCGGTTCCGGCTGGAAGACCTGCTTCCCCGGTTTGTTTACGTCGCCCTTCGGACACCCCCTCTTCCCTACCGTCTTG
CAAAGATGGCGGAGGATCATGGGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
945 bp314 aa821026+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKNRIQFQKGLSFAEFHRQYGTEEQCRQALFQWRWPSGFRCPSCEGDRFCVLSNGRYQCNSCRHQASLTSGTLFAGTKLPLTVWFLAIYLLTQSKNAMS
ALELKRQLGVCYNTAWLLKHKVLQVMKERDDALPLSGPVQIDDAYWGGERRGGKRGRGAPGKTPFLAAVQCTEEGRPLRLRLTRVRGFSRHEIDSWARKH
LSPDCTVVSDGLPAFRGMARAGYAHQPQVTGGGPYSVKNPAFLWVNTMLGNVKNAIHGTYHAVREKHLPRYLAEFCYRFNRRFRLEDLLPRFVYVALRTP
PLPYRLAKMAEDHG

 

Blast result :
Comments
ISLps1 is 72% aa similar to ISHch1.
References
1] Lo,I., Denef,V.J., VerBerkmoes,N.C., Shah,M., Goltsman,D., DiBartolo,G., Tyson,G., Allen,E.E., Ram,R.J., Detter,J.C., Richardson,P., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2007) Nature In press.