ISLin1

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004342 ND Leptospira interrogans
Leptospira interrogans serovar Lai 5660
DNA section
IS Length : 1610 bp

Ends


Left end : CAACGCGATTCATAGATTAGTATGATTCTTGGACGTAAGACAAGTCGAAGTGTGATACTCTTGAATCGACGGAGTCAAGAAGGCCGGTGGCAGATTGATC
Right end : ATGTGCCTTTTTGAACCCAGAACGGCGATCCATAGAAAGCCCGTTCTGTTGAGTTCATTCTGATTTTAAAATCCTATTCAACTTGTGGGGTTGGTTATGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CAACGCGATTCATAGATTAGTATGATTCTTGGACGTAAGACAAGTCGAAGTGTGATACTCTTGAATCGACGGAGTCAAGAAGGCCGGTGGCAGATTGATC
GCTCTCTTGGGGCTTTGTAAGACCCCGTTTCATAGATGAATCCAAATCGGCCACCGCAAACCAAAGTGTGGCGACTCAACAAAGTCGACCGCGTATAGGA
GTGCTGGTGTTATCACCCGACTTTGTTAAGTCCTTCCGCCTCTTTCATTTTAGGAGAAAAGAAATGGAAAGTCAAGAAGTCAAGTATGTAGGAGTCGATT
GTGGAAAGAAAAGTATAGAGGTTGTTCGAATCAATTCGGAAAACTCACTCGAACGTAGACAATTCAGCACAACGGAAAGTGGTATTAACAATTTATTACA
ATGGTTGACCTTGAATGACATTGTAGGTCTGGAAGCAGGATCTCAATCTTTTAGAATTGCAAAATCAATATTAAACAAAGGGGTTCAAGTAATTGTCCTG
AACCCGGGTAACCTGGCCACAATCTATCAGTCGTTAAAAAAAACAGATAAAGAAGACTCTCTCAAGATTGCGAGACTCATACAACGTTTTCCAATAGAAG
AATTACCTACTGTTCCGATTCCAAATGATGAAGAGGAAGACAATAGAAGACTATGCACGGAACAAGAGAATTGGACAAAACAACTAACGCAAGGAAAGAA
TCGGCTTCATAGTTTATTCACCCAAGCCGGTTTGACTCAGATCACTAAAAAGCATTTAAGAACAAAAGCAAATAGAGAAATCTCTGTAGCCTTACTTCCA
AGTCGATACCAAAAAGAAGCGGAAAGAATATTAAAAGTTTTAGATTTAGTGGAACAAAATCTAAAACTCATAGAAAAAGAAATTCAAGAAGCTCTCAAAA
AAAACAAAGCCTATGTTCAGACGATCATGTCTATGCCTGGAATTGGAATGATTACTTCTTTGGCGATTATGAGTTACATGGGTGATTGTAAAAGATTTTC
TTCAGCTAAACAAGCGGCTTACTACGCTGGTTTGGTTCCGAGAGTTGACATTTCAGGAGACACGGTTCGATACGGAAGAATCATAAATCGAGGTTGTCAT
TCAATTCGAAGGGTGATTGTTCAAGCGGCTTGGAGTCTGGTTCGTTGTCAACACGGTGGTAAGGTAAAAGAGTTCTATCAAAGGTTATACCTTAAAAAAG
GTGCTAAAAAATCGATCATCGCTACTTCACGTAAAATGATCGAAGTTCTTTACGTAATGATTCGAACCGGAAAACTTTTCGATTCTATGCCTGAAAATAT
ATTAAATCGAAAATTAACTCAATATGGTCTTATGTAAAAAAAATAACGGGAGGGCTTGACACAAGAAACATAGGAGAGAGCGTTGTGTTGAGTTTTCCCT
AGATTTTGGGTGGTGGGGTGGGAGGTGGAAAGGCTTGGAAAACTTTTCTCTATCAGAAAAACATACTTTTTGCAAGTAAAAAGACTCATTCTTGTCGGAA
CACTTGAAAAATGTGCCTTTTTGAACCCAGAACGGCGATCCATAGAAAGCCCGTTCTGTTGAGTTCATTCTGATTTTAAAATCCTATTCAACTTGTGGGG
TTGGTTATGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1074 bp357 aa2641337+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MESQEVKYVGVDCGKKSIEVVRINSENSLERRQFSTTESGINNLLQWLTLNDIVGLEAGSQSFRIAKSILNKGVQVIVLNPGNLATIYQSLKKTDKEDSL
KIARLIQRFPIEELPTVPIPNDEEEDNRRLCTEQENWTKQLTQGKNRLHSLFTQAGLTQITKKHLRTKANREISVALLPSRYQKEAERILKVLDLVEQNL
KLIEKEIQEALKKNKAYVQTIMSMPGIGMITSLAIMSYMGDCKRFSSAKQAAYYAGLVPRVDISGDTVRYGRIINRGCHSIRRVIVQAAWSLVRCQHGGK
VKEFYQRLYLKKGAKKSIIATSRKMIEVLYVMIRTGKLFDSMPENILNRKLTQYGLM

 

Blast result :
Comments
ISLin1 is 47% aa similar to ISMba20.
References
1] Ren,S.X., Fu,G., Jiang,X.G., Zeng,R., Miao,Y.G., Xu,H., Zhang,Y.X., Xiong,H., Lu,G., Lu,L.F., Jiang,H.Q., Jia,J., Tu,Y.F., Jiang,J.X., Gu,W.Y., Zhang,Y.Q., Cai,Z., Sheng,H.H., Yin,H.F., Zhang,Y., Zhu,G.F., Wan,M., Huang,H.L., Qian,Z., Wang,S.Y., Ma,W., Yao,Z.J., Shen,Y., Qiang,B.Q., Xia,Q.C., Guo,X.K., Danchin,A., SaintGirons,I., Somerville,R.L., Wen,Y.M., Shi,M.H., Chen,Z., Xu,J.G. and Zhao,G.P.(2003) Nature 422 (6934), 888-893