ISRhosp2
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008269 | ND | Rhodococcus sp. | Rhodococcus sp. RHA1 |
DNA section
IS Length : 1361 bp
Ends
IR Length : 21
IRL : TACTGCAACGACAGTTTGTGACTAACGGGACTGTTGTGGTAATTGATCTA
IRR : TACTGCAACGACAGTTTGTGATGTCGATGTTTGTAGTGGCTGGCGCGGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCCACCTC | CTAA | TCCCAAGGTA | 4 |
DNA sequence
TACTGCAACGACAGTTTGTGACTAACGGGACTGTTGTGGTAATTGATCTAGGGTGCAGTCAGAGGTGCTGGAGTGGTCAGCGGGGTTCACCGCGTTCTGT
GCGCGGTTCGCCCACCGGTTTTCGCGGGTGGAGTCGCGGCGGCGGATGGCCGCGTATGTGCGCGGACTGCTCGGTGAGGTCGAACGTAAGAACGGATGGA
CACTGGCGGAGGCGGCCGGTGATACGGGCCCGGAGGGCATGCAGCGGCTGCTGAACTTCTACTCCTGGGACTGCGAGGGGCTTCGTGACGACGTGCGTGA
GGTCGTGGTCGAGACGATCGGTGACGCCGACAAGGGCGTGTTGATCGTCGACGAGACAGGATTTTTGAAGAAGGGCACCCGCTCGGCCGGGGTGGCCCGG
CAGTATTCCGGCACGGCCGGACGTATCGAGAACAGCCAGATCGGGGTGTTTCTCGCCTACGCCTCCGACCGGGGCCGGGCGCTGATCGATCGCGAGTTGT
ATCTTCCGAGGGCCTGGACCGAGGACCGCGATCGGTGCCGGGCTGCCGGGATCGGCGACGAGGTGGCTTTCGCGACGAAACCCGAACTGGCGCAGATGAT
GATCGAACGGGCTCTCGATGCCGGGGTGCCGTTCGGGTGGTTTACCGGTGACGAGGCCTACGGGCAGGTCGGCAAGCTCCGGCTGTGGCTCGAATCCCGT
GGTGTGGCCCATGTTCTCGCCGTTCCGAAGTCGCAGATGGTGATCTCGATGGAGTTGCGCCAGCGCCGCGCCCACGCCGTGATCGCCGACCTGCCGGCGA
CCGCGTGGCAGCGGATCAACTGCGGCGACGGCGCCCACGGACCCAGGCTCTACGACTGGGCGGTCGTCGACATTCGGCCACTGCGCGAACGGGGTAGCGG
CCACTGGCTGCTGGCCCGCCGGTCGATCACCGACCCCGACGAGATTGCCTACTACATCTGCTATGGCCCCGCCGACACCGAACCCGCCGAGCTGGTCCGG
GTAGCTGGCAGTCGCTGGGCGATCGAGGAGTGCTTCCAGACCACCAAGAACGAGACCGGACTCGATCACTACCAGGTGCGCGGGTACCCGGCCTGGTACC
GGCACATCACCTTGTCGATGGCCGCGGCTGCCTTCCTGACCATCCTGCGCCGCGGCGCTCAAAAAGGGGATCTGAAACCGGTACCCGAGATCTAATACCT
CTGACAATCAACGAGATCCGGCGATTGTTCAACCGCGTCGCCTGCCCAGTCCAACACGCCCTCGTCCACGTCTGGCACTGGTCGAACTGGCGCCGCGCCA
GCCAGGCCAGAGCCCGCGCCAGCCACTACAAACATCGACATCACAAACTGTCGTTGCAGTA
GCGCGGTTCGCCCACCGGTTTTCGCGGGTGGAGTCGCGGCGGCGGATGGCCGCGTATGTGCGCGGACTGCTCGGTGAGGTCGAACGTAAGAACGGATGGA
CACTGGCGGAGGCGGCCGGTGATACGGGCCCGGAGGGCATGCAGCGGCTGCTGAACTTCTACTCCTGGGACTGCGAGGGGCTTCGTGACGACGTGCGTGA
GGTCGTGGTCGAGACGATCGGTGACGCCGACAAGGGCGTGTTGATCGTCGACGAGACAGGATTTTTGAAGAAGGGCACCCGCTCGGCCGGGGTGGCCCGG
CAGTATTCCGGCACGGCCGGACGTATCGAGAACAGCCAGATCGGGGTGTTTCTCGCCTACGCCTCCGACCGGGGCCGGGCGCTGATCGATCGCGAGTTGT
ATCTTCCGAGGGCCTGGACCGAGGACCGCGATCGGTGCCGGGCTGCCGGGATCGGCGACGAGGTGGCTTTCGCGACGAAACCCGAACTGGCGCAGATGAT
GATCGAACGGGCTCTCGATGCCGGGGTGCCGTTCGGGTGGTTTACCGGTGACGAGGCCTACGGGCAGGTCGGCAAGCTCCGGCTGTGGCTCGAATCCCGT
GGTGTGGCCCATGTTCTCGCCGTTCCGAAGTCGCAGATGGTGATCTCGATGGAGTTGCGCCAGCGCCGCGCCCACGCCGTGATCGCCGACCTGCCGGCGA
CCGCGTGGCAGCGGATCAACTGCGGCGACGGCGCCCACGGACCCAGGCTCTACGACTGGGCGGTCGTCGACATTCGGCCACTGCGCGAACGGGGTAGCGG
CCACTGGCTGCTGGCCCGCCGGTCGATCACCGACCCCGACGAGATTGCCTACTACATCTGCTATGGCCCCGCCGACACCGAACCCGCCGAGCTGGTCCGG
GTAGCTGGCAGTCGCTGGGCGATCGAGGAGTGCTTCCAGACCACCAAGAACGAGACCGGACTCGATCACTACCAGGTGCGCGGGTACCCGGCCTGGTACC
GGCACATCACCTTGTCGATGGCCGCGGCTGCCTTCCTGACCATCCTGCGCCGCGGCGCTCAAAAAGGGGATCTGAAACCGGTACCCGAGATCTAATACCT
CTGACAATCAACGAGATCCGGCGATTGTTCAACCGCGTCGCCTGCCCAGTCCAACACGCCCTCGTCCACGTCTGGCACTGGTCGAACTGGCGCCGCGCCA
GCCAGGCCAGAGCCCGCGCCAGCCACTACAAACATCGACATCACAAACTGTCGTTGCAGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1140 bp | 380 aa | 53 | 1192 | + | No |
Chemistry : DDE
ORF sequence :
VQSEVLEWSAGFTAFCARFAHRFSRVESRRRMAAYVRGLLGEVERKNGWTLAEAAGDTGPEGMQRLLNFYSWDCEGLRDDVREVVVETIGDADKGVLIVD
ETGFLKKGTRSAGVARQYSGTAGRIENSQIGVFLAYASDRGRALIDRELYLPRAWTEDRDRCRAAGIGDEVAFATKPELAQMMIERALDAGVPFGWFTGD
EAYGQVGKLRLWLESRGVAHVLAVPKSQMVISMELRQRRAHAVIADLPATAWQRINCGDGAHGPRLYDWAVVDIRPLRERGSGHWLLARRSITDPDEIAY
YICYGPADTEPAELVRVAGSRWAIEECFQTTKNETGLDHYQVRGYPAWYRHITLSMAAAAFLTILRRGAQKGDLKPVPEI
ETGFLKKGTRSAGVARQYSGTAGRIENSQIGVFLAYASDRGRALIDRELYLPRAWTEDRDRCRAAGIGDEVAFATKPELAQMMIERALDAGVPFGWFTGD
EAYGQVGKLRLWLESRGVAHVLAVPKSQMVISMELRQRRAHAVIADLPATAWQRINCGDGAHGPRLYDWAVVDIRPLRERGSGHWLLARRSITDPDEIAY
YICYGPADTEPAELVRVAGSRWAIEECFQTTKNETGLDHYQVRGYPAWYRHITLSMAAAAFLTILRRGAQKGDLKPVPEI
Blast result :
Comments
ISRhosp2 is 57% aa similar to ISSav3. ISRhosp2 has been found by screening completely sequenced bacterial genomes for sequences homologous to the IS1452 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-99-D(N3)-124-E(C1). The copy number of ISRhosp2 in Rhodococcus sp. RHA1 (plasmid pRHL1) is 1 on pRHL1 and 1 on the chromosome.
References
1] McLeod,M.P. (2006) In press
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18