ISPin2
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008709 | ND | Psychromonas ingrahamii | Psychromonas ingrahamii 37 |
DNA section
IS Length : 1262 bp
Ends
IR Length : 33/44
IRL : TGACGTGGTTTAATAGATTCACACACCCCAGTTAGGACATAATGAACTTA
IRR : TGACGTGGTCAACTAAATTCACTCACCCTAGTTAAGCTACTTTTTCAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTGCAACAA | CTACCAGCTT | 0 |
DNA sequence
TGACGTGGTTTAATAGATTCACACACCCCAGTTAGGACATAATGAACTTAACTGTAGAAACAGAATGACAACACGTAAAAAATATTCAAAAGAATTTAAA
TTAGATGCAATATCGCTCGTCAATGAGCAAGGTTACAACAATGCTGAAGCCTCTAGAAACCTAGGTATTAGCCCAAGTTTACTGGGTAAATGGATTAGAG
AAGCCGAAAAAGGCGACGGCCTCGCTTTCAGAGGCAATGGTAAATTAACGCCCGAACAATTAGAAATCCGTCAACTCAAAAAAGAAAATAGAAAACTTAA
AATGGAGCGTGAAATTTTAAAAAAGCGACGGTCTTCTTTGCAAAAGAAGCGAAATAAAGTATTCGTTTATTACTGAGCATAAGAAGACCTGGCCAGTGCG
CGTTATCTGCCCCTTAATTGGTGTCGAAATTCGCAATTATTACAGTTACTTAAAACGTCGTGAAACAAAAAAGTTCGATCCAGATCATGGCGACATGATT
GAAATGATACAAAAAATATCAGAGAGCAGCGATCACACCTATGGCAGCCGTCGAATGCAGAAAAGCTTAAATGCATTGAGCTTCCCAGTTGGACGCTGGA
AAACAGCACAATTAATGAAAGAAGCAGGCGTTTGGGTTCGTTATAAAAAGAAATATAAAGTGACGACAAACAGTGAGCATAAGAAACCTGTTTATAAAAA
TGTACTTAAGCAAAACTTCAAATACGATCAGCCAAATAAAGCTTATGTTGGCGATATAACCTATATTTGGACAACCGAGGGCTGGTTATATCTTGCTGTT
ATCATTGACTTATATTCGAGAAAAGTGGTTGGCTGGAGCATGTCATCACGAATGAAGGCAAGTCTTGTATGTGATGCATTAACCAGGGCTATTTGGCAAC
GAAACCCACCTCCAGGGCTTATTGTTCATTCAGATCAAGGTGTTCAATATGCAAGTGACCAATATCGTAAATTGCTTAAGAGTCATAATTTTATTGGGAG
CATGAGCAAAAAAGGTTGTTGTTGGGATAATGCTGTCGCTGAAAGCTTTTTTGGCAGTCTAAAGCAGGAAAGAGTGCATTGGAATAATTACGCTACTCGC
TATGAAGCACAACAAGATATATTGCATTACATAACCATGTGGTACAACAGCAATCGTCTTCATTCATACTTAGGTTATTGTTGCCCAAGCACTTTTGAAA
TGATGAACGGGTATTTGAAAAAGTAGCTTAACTAGGGTGAGTGAATTTAGTTGACCACGTCA
TTAGATGCAATATCGCTCGTCAATGAGCAAGGTTACAACAATGCTGAAGCCTCTAGAAACCTAGGTATTAGCCCAAGTTTACTGGGTAAATGGATTAGAG
AAGCCGAAAAAGGCGACGGCCTCGCTTTCAGAGGCAATGGTAAATTAACGCCCGAACAATTAGAAATCCGTCAACTCAAAAAAGAAAATAGAAAACTTAA
AATGGAGCGTGAAATTTTAAAAAAGCGACGGTCTTCTTTGCAAAAGAAGCGAAATAAAGTATTCGTTTATTACTGAGCATAAGAAGACCTGGCCAGTGCG
CGTTATCTGCCCCTTAATTGGTGTCGAAATTCGCAATTATTACAGTTACTTAAAACGTCGTGAAACAAAAAAGTTCGATCCAGATCATGGCGACATGATT
GAAATGATACAAAAAATATCAGAGAGCAGCGATCACACCTATGGCAGCCGTCGAATGCAGAAAAGCTTAAATGCATTGAGCTTCCCAGTTGGACGCTGGA
AAACAGCACAATTAATGAAAGAAGCAGGCGTTTGGGTTCGTTATAAAAAGAAATATAAAGTGACGACAAACAGTGAGCATAAGAAACCTGTTTATAAAAA
TGTACTTAAGCAAAACTTCAAATACGATCAGCCAAATAAAGCTTATGTTGGCGATATAACCTATATTTGGACAACCGAGGGCTGGTTATATCTTGCTGTT
ATCATTGACTTATATTCGAGAAAAGTGGTTGGCTGGAGCATGTCATCACGAATGAAGGCAAGTCTTGTATGTGATGCATTAACCAGGGCTATTTGGCAAC
GAAACCCACCTCCAGGGCTTATTGTTCATTCAGATCAAGGTGTTCAATATGCAAGTGACCAATATCGTAAATTGCTTAAGAGTCATAATTTTATTGGGAG
CATGAGCAAAAAAGGTTGTTGTTGGGATAATGCTGTCGCTGAAAGCTTTTTTGGCAGTCTAAAGCAGGAAAGAGTGCATTGGAATAATTACGCTACTCGC
TATGAAGCACAACAAGATATATTGCATTACATAACCATGTGGTACAACAGCAATCGTCTTCATTCATACTTAGGTTATTGTTGCCCAAGCACTTTTGAAA
TGATGAACGGGTATTTGAAAAAGTAGCTTAACTAGGGTGAGTGAATTTAGTTGACCACGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
312 bp | 103 aa | 65 | 376 | + | No |
Description : First part of the transposase
ORF sequence :
MTTRKKYSKEFKLDAISLVNEQGYNNAEASRNLGISPSLLGKWIREAEKGDGLAFRGNGKLTPEQLEIRQLKKENRKLKMEREILKKRRSSLQKKRNKVF
VYY
VYY
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
906 bp | 301 aa | 321 | 1226 | + | No |
Description : Second part of the transposase
ORF sequence :
KSDGLLCKRSEIKYSFITEHKKTWPVRVICPLIGVEIRNYYSYLKRRETKKFDPDHGDMIEMIQKISESSDHTYGSRRMQKSLNALSFPVGRWKTAQLMK
EAGVWVRYKKKYKVTTNSEHKKPVYKNVLKQNFKYDQPNKAYVGDITYIWTTEGWLYLAVIIDLYSRKVVGWSMSSRMKASLVCDALTRAIWQRNPPPGL
IVHSDQGVQYASDQYRKLLKSHNFIGSMSKKGCCWDNAVAESFFGSLKQERVHWNNYATRYEAQQDILHYITMWYNSNRLHSYLGYCCPSTFEMMNGYLK
K
EAGVWVRYKKKYKVTTNSEHKKPVYKNVLKQNFKYDQPNKAYVGDITYIWTTEGWLYLAVIIDLYSRKVVGWSMSSRMKASLVCDALTRAIWQRNPPPGL
IVHSDQGVQYASDQYRKLLKSHNFIGSMSKKGCCWDNAVAESFFGSLKQERVHWNNYATRYEAQQDILHYITMWYNSNRLHSYLGYCCPSTFEMMNGYLK
K
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1162 bp | 387 aa | 65 | 1226 | + | Yes |
Chemistry : DDE
ORF sequence :
MTTRKKYSKEFKLDAISLVNEQGYNNAEASRNLGISPSLLGKWIREAEKGDGLAFRGNGKLTPEQLEIRQLKKENRKLKMEREILKKSDGLLCKRSEIKY
SFITEHKKTWPVRVICPLIGVEIRNYYSYLKRRETKKFDPDHGDMIEMIQKISESSDHTYGSRRMQKSLNALSFPVGRWKTAQLMKEAGVWVRYKKKYKV
TTNSEHKKPVYKNVLKQNFKYDQPNKAYVGDITYIWTTEGWLYLAVIIDLYSRKVVGWSMSSRMKASLVCDALTRAIWQRNPPPGLIVHSDQGVQYASDQ
YRKLLKSHNFIGSMSKKGCCWDNAVAESFFGSLKQERVHWNNYATRYEAQQDILHYITMWYNSNRLHSYLGYCCPSTFEMMNGYLKK
SFITEHKKTWPVRVICPLIGVEIRNYYSYLKRRETKKFDPDHGDMIEMIQKISESSDHTYGSRRMQKSLNALSFPVGRWKTAQLMKEAGVWVRYKKKYKV
TTNSEHKKPVYKNVLKQNFKYDQPNKAYVGDITYIWTTEGWLYLAVIIDLYSRKVVGWSMSSRMKASLVCDALTRAIWQRNPPPGLIVHSDQGVQYASDQ
YRKLLKSHNFIGSMSKKGCCWDNAVAESFFGSLKQERVHWNNYATRYEAQQDILHYITMWYNSNRLHSYLGYCCPSTFEMMNGYLKK
Blast result :
Comments
ISPin2 is 78% (ORFA) aa similar to ISAma1 and 78% (ORFB) aa similar to ISApr1. The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J. and Richardson,P.(2007) Direct submission GenBank.