ISSpo2

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003911 ND Silicibacter pomeroyi
Silicibacter pomeroyi DSS-3
Ruegeria pomeroyi DSS-3
DNA section
IS Length : 1664 bp

Ends


IR Length : 13/15

IRL : CCCGCATTCCCCAAGCAACCTGACGTTTTCGCGCCTGTGGCGTTTGGTAA
IRR : CCGGCATCCCCCAAGTAGAACGCCAACCGTCACATGTTGCAGCCACATTG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCCGCATTCCCCAAGCAACCTGACGTTTTCGCGCCTGTGGCGTTTGGTAATGTGTTATATTTCAGCACGTTAATAGGGTTGATGGCGGCAGATCGTGGAT
CACCTTGAGGATGCAGGCGAAACGGGTGCTGTTCGGCTTGGTTTTGACCGTCGGGTGCGACTGGAATTTCATGGCTCGAAGATCAGTTCGGACGGTGGGC
TGCTGTTGTTTCGGGAACTGGATGAGGTACTCGGCCTGCACGACATTGCGCGCGGTGTTTTGCGCGACACGCGAACCGGCCACAACCGTTTGCATTCTAT
AGTCGGGCTTTTGCGACAATCGGTCTTCGGGCGATTGGCCGGATACGAAGACGTGAATGACGCCGACCGACTGGCGCTCGATCCGGTGATGCAGCAGGTC
GTTGGCGGACGAGCCGTCGATACCAATGCGGCGTCCGCGAGCCAGATGGGACGGTTCGAGACCAAAGTACGGGCAACAGCCGAAAAACGCGCTGCGCTGG
CTGAGTTGTCTGGGCAGTGGATCGACCGGGTTCATGCGTCTGCCCCACCCAAATGGATCACGCTGGACATCGACAGCTCGGTCTGCCCGACCCACGGTGC
GCAGGAGGGCACGGCCTGGAACGGCCATTTCGGCTGCATTTGCTATCACCCCCTGTTCGTGTTCAACCAGTTCGGCCATCTTGAATGCTGCGCTCTGCGC
CCGGGCAATGTGCACAGCGCCGACGGATGGGAAGAGGTTCTGAAACCGGTCATCGCACGATACGCGGATCGTCACCTGATGCGGTTCTTCTGGGCCGATG
CCGCCTTCGCCATCCCGGGCCTCTATGAGGCGCTGGAAGCAGAGAACTGCTTCTACGCCATCCGGATGCGTGCCAATCGCATTCTTCAAGGCAGGATCGC
GCATCTGCTCAAACGCCCGGTGGGCCGACCGCCGAACCATGTGCGGCGCATCTACGGTGACTTTGAGTATCAGTCGGCATCATGGGACAAGCCACGGCGC
GTTGTCGCCAAGGTCGAGAGGCATCCCGGCGAGTTGTTCCCGCGCATCGGTTTCGTCGTCACCAATCTGCCGATGGTCCCTGACTGGATCGTCCATTTCC
ATAATCAGCGTGGCACAGCCGAGCAGCGCATCAAGGAAGGCAAGCAGGCGATCAACTGGACGCGGCTGTCCTGCAAGGGCTTGGCGCAGAACGAGGTCCG
GCTTCAGCTTCACGCATTGGCCTACAATCTGGGAGTCTTCCTGCAAGGCGCTGATCTGCCAGAGGAGGTGGCCGAGTGGTCGCTGACCAGCCTGCAAACC
CGGCTGATCAAAATCGGGGCACGAGTCGTCCGCCATGCCCGCGCCATCAAGTTCCAACTGGCAGAGGTTGCGGCCAGTGGCGACCGGTTCCGTCTCATCC
TGACGGCCATCCAACGGCTGCGTGCGCCACCGGTTCCATCATGATGACGTCGGCGACAAAATCCGAACGAACCCGGCTCGACTGGTCTGCCCAATGGGGT
GCCGATTCGTCCCGAAACCGCAAAAACCCCCCGCCGAGGCTATAAATCATGCTCAGTTCCCGTTTCAGATGCCAGAACTACGGCACAGCCAGCATATGAA
GCTGGAACCGTGCGCAATGTGGCTGCAACATGTGACGGTTGGCGTTCTACTTGGGGGATGCCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp449 aa951444+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDHLEDAGETGAVRLGFDRRVRLEFHGSKISSDGGLLLFRELDEVLGLHDIARGVLRDTRTGHNRLHSIVGLLRQSVFGRLAGYEDVNDADRLALDPVMQ
QVVGGRAVDTNAASASQMGRFETKVRATAEKRAALAELSGQWIDRVHASAPPKWITLDIDSSVCPTHGAQEGTAWNGHFGCICYHPLFVFNQFGHLECCA
LRPGNVHSADGWEEVLKPVIARYADRHLMRFFWADAAFAIPGLYEALEAENCFYAIRMRANRILQGRIAHLLKRPVGRPPNHVRRIYGDFEYQSASWDKP
RRVVAKVERHPGELFPRIGFVVTNLPMVPDWIVHFHNQRGTAEQRIKEGKQAINWTRLSCKGLAQNEVRLQLHALAYNLGVFLQGADLPEEVAEWSLTSL
QTRLIKIGARVVRHARAIKFQLAEVAASGDRFRLILTAIQRLRAPPVPS

 

Blast result :
Comments
There is a single copy of ISSpo2 in Silicibacter pomeroyi DSS-3. ISSpo2 is 80% aa similar to ISPme1.
References
1] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913