ISSpo2
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003911 | ND | Silicibacter pomeroyi | Silicibacter pomeroyi DSS-3 Ruegeria pomeroyi DSS-3 |
DNA section
IS Length : 1664 bp
Ends
IR Length : 13/15
IRL : CCCGCATTCCCCAAGCAACCTGACGTTTTCGCGCCTGTGGCGTTTGGTAA
IRR : CCGGCATCCCCCAAGTAGAACGCCAACCGTCACATGTTGCAGCCACATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCCGCATTCCCCAAGCAACCTGACGTTTTCGCGCCTGTGGCGTTTGGTAATGTGTTATATTTCAGCACGTTAATAGGGTTGATGGCGGCAGATCGTGGAT
CACCTTGAGGATGCAGGCGAAACGGGTGCTGTTCGGCTTGGTTTTGACCGTCGGGTGCGACTGGAATTTCATGGCTCGAAGATCAGTTCGGACGGTGGGC
TGCTGTTGTTTCGGGAACTGGATGAGGTACTCGGCCTGCACGACATTGCGCGCGGTGTTTTGCGCGACACGCGAACCGGCCACAACCGTTTGCATTCTAT
AGTCGGGCTTTTGCGACAATCGGTCTTCGGGCGATTGGCCGGATACGAAGACGTGAATGACGCCGACCGACTGGCGCTCGATCCGGTGATGCAGCAGGTC
GTTGGCGGACGAGCCGTCGATACCAATGCGGCGTCCGCGAGCCAGATGGGACGGTTCGAGACCAAAGTACGGGCAACAGCCGAAAAACGCGCTGCGCTGG
CTGAGTTGTCTGGGCAGTGGATCGACCGGGTTCATGCGTCTGCCCCACCCAAATGGATCACGCTGGACATCGACAGCTCGGTCTGCCCGACCCACGGTGC
GCAGGAGGGCACGGCCTGGAACGGCCATTTCGGCTGCATTTGCTATCACCCCCTGTTCGTGTTCAACCAGTTCGGCCATCTTGAATGCTGCGCTCTGCGC
CCGGGCAATGTGCACAGCGCCGACGGATGGGAAGAGGTTCTGAAACCGGTCATCGCACGATACGCGGATCGTCACCTGATGCGGTTCTTCTGGGCCGATG
CCGCCTTCGCCATCCCGGGCCTCTATGAGGCGCTGGAAGCAGAGAACTGCTTCTACGCCATCCGGATGCGTGCCAATCGCATTCTTCAAGGCAGGATCGC
GCATCTGCTCAAACGCCCGGTGGGCCGACCGCCGAACCATGTGCGGCGCATCTACGGTGACTTTGAGTATCAGTCGGCATCATGGGACAAGCCACGGCGC
GTTGTCGCCAAGGTCGAGAGGCATCCCGGCGAGTTGTTCCCGCGCATCGGTTTCGTCGTCACCAATCTGCCGATGGTCCCTGACTGGATCGTCCATTTCC
ATAATCAGCGTGGCACAGCCGAGCAGCGCATCAAGGAAGGCAAGCAGGCGATCAACTGGACGCGGCTGTCCTGCAAGGGCTTGGCGCAGAACGAGGTCCG
GCTTCAGCTTCACGCATTGGCCTACAATCTGGGAGTCTTCCTGCAAGGCGCTGATCTGCCAGAGGAGGTGGCCGAGTGGTCGCTGACCAGCCTGCAAACC
CGGCTGATCAAAATCGGGGCACGAGTCGTCCGCCATGCCCGCGCCATCAAGTTCCAACTGGCAGAGGTTGCGGCCAGTGGCGACCGGTTCCGTCTCATCC
TGACGGCCATCCAACGGCTGCGTGCGCCACCGGTTCCATCATGATGACGTCGGCGACAAAATCCGAACGAACCCGGCTCGACTGGTCTGCCCAATGGGGT
GCCGATTCGTCCCGAAACCGCAAAAACCCCCCGCCGAGGCTATAAATCATGCTCAGTTCCCGTTTCAGATGCCAGAACTACGGCACAGCCAGCATATGAA
GCTGGAACCGTGCGCAATGTGGCTGCAACATGTGACGGTTGGCGTTCTACTTGGGGGATGCCGG
CACCTTGAGGATGCAGGCGAAACGGGTGCTGTTCGGCTTGGTTTTGACCGTCGGGTGCGACTGGAATTTCATGGCTCGAAGATCAGTTCGGACGGTGGGC
TGCTGTTGTTTCGGGAACTGGATGAGGTACTCGGCCTGCACGACATTGCGCGCGGTGTTTTGCGCGACACGCGAACCGGCCACAACCGTTTGCATTCTAT
AGTCGGGCTTTTGCGACAATCGGTCTTCGGGCGATTGGCCGGATACGAAGACGTGAATGACGCCGACCGACTGGCGCTCGATCCGGTGATGCAGCAGGTC
GTTGGCGGACGAGCCGTCGATACCAATGCGGCGTCCGCGAGCCAGATGGGACGGTTCGAGACCAAAGTACGGGCAACAGCCGAAAAACGCGCTGCGCTGG
CTGAGTTGTCTGGGCAGTGGATCGACCGGGTTCATGCGTCTGCCCCACCCAAATGGATCACGCTGGACATCGACAGCTCGGTCTGCCCGACCCACGGTGC
GCAGGAGGGCACGGCCTGGAACGGCCATTTCGGCTGCATTTGCTATCACCCCCTGTTCGTGTTCAACCAGTTCGGCCATCTTGAATGCTGCGCTCTGCGC
CCGGGCAATGTGCACAGCGCCGACGGATGGGAAGAGGTTCTGAAACCGGTCATCGCACGATACGCGGATCGTCACCTGATGCGGTTCTTCTGGGCCGATG
CCGCCTTCGCCATCCCGGGCCTCTATGAGGCGCTGGAAGCAGAGAACTGCTTCTACGCCATCCGGATGCGTGCCAATCGCATTCTTCAAGGCAGGATCGC
GCATCTGCTCAAACGCCCGGTGGGCCGACCGCCGAACCATGTGCGGCGCATCTACGGTGACTTTGAGTATCAGTCGGCATCATGGGACAAGCCACGGCGC
GTTGTCGCCAAGGTCGAGAGGCATCCCGGCGAGTTGTTCCCGCGCATCGGTTTCGTCGTCACCAATCTGCCGATGGTCCCTGACTGGATCGTCCATTTCC
ATAATCAGCGTGGCACAGCCGAGCAGCGCATCAAGGAAGGCAAGCAGGCGATCAACTGGACGCGGCTGTCCTGCAAGGGCTTGGCGCAGAACGAGGTCCG
GCTTCAGCTTCACGCATTGGCCTACAATCTGGGAGTCTTCCTGCAAGGCGCTGATCTGCCAGAGGAGGTGGCCGAGTGGTCGCTGACCAGCCTGCAAACC
CGGCTGATCAAAATCGGGGCACGAGTCGTCCGCCATGCCCGCGCCATCAAGTTCCAACTGGCAGAGGTTGCGGCCAGTGGCGACCGGTTCCGTCTCATCC
TGACGGCCATCCAACGGCTGCGTGCGCCACCGGTTCCATCATGATGACGTCGGCGACAAAATCCGAACGAACCCGGCTCGACTGGTCTGCCCAATGGGGT
GCCGATTCGTCCCGAAACCGCAAAAACCCCCCGCCGAGGCTATAAATCATGCTCAGTTCCCGTTTCAGATGCCAGAACTACGGCACAGCCAGCATATGAA
GCTGGAACCGTGCGCAATGTGGCTGCAACATGTGACGGTTGGCGTTCTACTTGGGGGATGCCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 449 aa | 95 | 1444 | + | No |
Chemistry : DDE
ORF sequence :
MDHLEDAGETGAVRLGFDRRVRLEFHGSKISSDGGLLLFRELDEVLGLHDIARGVLRDTRTGHNRLHSIVGLLRQSVFGRLAGYEDVNDADRLALDPVMQ
QVVGGRAVDTNAASASQMGRFETKVRATAEKRAALAELSGQWIDRVHASAPPKWITLDIDSSVCPTHGAQEGTAWNGHFGCICYHPLFVFNQFGHLECCA
LRPGNVHSADGWEEVLKPVIARYADRHLMRFFWADAAFAIPGLYEALEAENCFYAIRMRANRILQGRIAHLLKRPVGRPPNHVRRIYGDFEYQSASWDKP
RRVVAKVERHPGELFPRIGFVVTNLPMVPDWIVHFHNQRGTAEQRIKEGKQAINWTRLSCKGLAQNEVRLQLHALAYNLGVFLQGADLPEEVAEWSLTSL
QTRLIKIGARVVRHARAIKFQLAEVAASGDRFRLILTAIQRLRAPPVPS
QVVGGRAVDTNAASASQMGRFETKVRATAEKRAALAELSGQWIDRVHASAPPKWITLDIDSSVCPTHGAQEGTAWNGHFGCICYHPLFVFNQFGHLECCA
LRPGNVHSADGWEEVLKPVIARYADRHLMRFFWADAAFAIPGLYEALEAENCFYAIRMRANRILQGRIAHLLKRPVGRPPNHVRRIYGDFEYQSASWDKP
RRVVAKVERHPGELFPRIGFVVTNLPMVPDWIVHFHNQRGTAEQRIKEGKQAINWTRLSCKGLAQNEVRLQLHALAYNLGVFLQGADLPEEVAEWSLTSL
QTRLIKIGARVVRHARAIKFQLAEVAASGDRFRLILTAIQRLRAPPVPS
Blast result :
Comments
There is a single copy of ISSpo2 in Silicibacter pomeroyi DSS-3. ISSpo2 is 80% aa similar to ISPme1.
References
1] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913