ISLca4
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008526 | ND | Lactobacillus casei | Lactobacillus casei ATCC 334 |
DNA section
IS Length : 1595 bp
Ends
IR Length : 19/24
IRL : CTAGGTGTAAAGTTTCTCTCGGTTAGGTCCGAGTCAGAAGGATAAATTGA
IRR : GTATGTGTCAAGTCTTTCTCGGTTCCACTAATTGAACTATTCTTTTTTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAGTAGAAC | GGGAAAACAA | 0 |
DNA sequence
CTAGGTGTAAAGTTTCTCTCGGTTAGGTCCGAGTCAGAAGGATAAATTGACAAAAGAAGACCGCTTGTCCTCTAATTGAGCTACCACACAAAATCAGAGA
GAAGCGATCTTCCATGTCCTCAATTGTAGCAATTGTCCTTGAAGCTTTAAAGTCCAATGACTCCATTATCAGTGCTGAAAGTCAAATGATGACCGAGCTC
AGCCAGTTGGTCTGTGCCGGCGTAGCTCAGGCTTGTGAGCAACTTGATGATGATTTGTGCCTTGGTCATAAGGATTACAGAATCATTCACAAGGATCAGC
GGCACATCACTGCCATGTTCGGTGATGTCGTGTTTAAGCAGCGCTTGGTGAAAGATGACAGTGGCCGGCTCTTTTACCCGTTTGACGAAAAGGTTGGCTT
AGCTACGGGTCGACGCTTCACACCAATGATCATGGCTAAGGTCGCCGAACTAGCCTCGTTGACTGTGATGCGGACAACCGCGAAGGCCGTTGATCTTCTA
ACGCCATTCTCGATGTCAGCGATGACCGTGGATAACTTAGTGCGCGAGGCTGGACAAGAGCTAGACACGGTACGTGAAGCCGAGGCCAAGTACGTCACGG
TGGAGGTAGACCGGCGAGCAGTACCGCAACTGTTCATCGAAGGCGATGCCTTTGAGGTGAAGCTGAAGCATGGCACTCAGGTAATGGTTCATCGCGTCCA
AATCAGTGAAGGCGTGACGCAGTCAGGCAAGCGGCACCAGTTGATCAACCGGCATAGCATCACCGGGCTGTCGCACGAGAAGGTCTTTGATGAAGCCAGG
TCATACATCGACCAGCACTACGATTTGCGCGAGACCTGCGTCCTGACCGGCAGTGATAATGGGTCTGGTTATAGTCCTAAGGCGTTCAAGGAGTTGGTCC
CGGGCGCCGCTAGGTGGGCGCACGTGCTAGACGACTACCACCTGAATCGCAAGCTCAAGGAGCGGTTCAGCATGATGCCACGTGATCTGCAAGACCTACT
CCGCAAGTCAGTTTGGACTGGCAACAAGGCCAGAACAGAGATGGTCTTGGATACCGCGGAAAGCATGGTTCAAGACACCGATTCAGGGGACTCAATGTGC
AGTGAATGGCTCGATAATCTCACCAAGCTTCGGCGCTATCTTGACCGAAATTGGCCTTACATCGAGGCACTTTCGAATCGACAATTGGATCGGCGTGGAC
TTGGAAGCTGTGAGTCTAACCATAGACGGTATACGTATCGGACCAAGCTGCAGGGCCGTTCATGGACAAGAAGTGGTCTGATCGCAGAGTTGAGGATCAT
TGACGCGCTGCAGAACGATGATTGCCTCAGCAGTCTGGAAGCTACGGCGTTTCTGGAAACGCAAATCAAGCCAGAAGTGAAGACCACGCTTCGGAGCCTT
CAGCTGTTTGGGCCAGCGCCCACAACGCACCAGGGTGCTTATCAGGGACGTATAGCGCTGTACGCAAGTACTAGTTCGGGCACTGGTCACCTAGCACACA
TCTTCAACTGAACCCACTCAGTAGACCAGGATGACCGGCAGTCGAGCAAAAAAGAATAGTTCAATTAGTGGAACCGAGAAAGACTTGACACATAC
GAAGCGATCTTCCATGTCCTCAATTGTAGCAATTGTCCTTGAAGCTTTAAAGTCCAATGACTCCATTATCAGTGCTGAAAGTCAAATGATGACCGAGCTC
AGCCAGTTGGTCTGTGCCGGCGTAGCTCAGGCTTGTGAGCAACTTGATGATGATTTGTGCCTTGGTCATAAGGATTACAGAATCATTCACAAGGATCAGC
GGCACATCACTGCCATGTTCGGTGATGTCGTGTTTAAGCAGCGCTTGGTGAAAGATGACAGTGGCCGGCTCTTTTACCCGTTTGACGAAAAGGTTGGCTT
AGCTACGGGTCGACGCTTCACACCAATGATCATGGCTAAGGTCGCCGAACTAGCCTCGTTGACTGTGATGCGGACAACCGCGAAGGCCGTTGATCTTCTA
ACGCCATTCTCGATGTCAGCGATGACCGTGGATAACTTAGTGCGCGAGGCTGGACAAGAGCTAGACACGGTACGTGAAGCCGAGGCCAAGTACGTCACGG
TGGAGGTAGACCGGCGAGCAGTACCGCAACTGTTCATCGAAGGCGATGCCTTTGAGGTGAAGCTGAAGCATGGCACTCAGGTAATGGTTCATCGCGTCCA
AATCAGTGAAGGCGTGACGCAGTCAGGCAAGCGGCACCAGTTGATCAACCGGCATAGCATCACCGGGCTGTCGCACGAGAAGGTCTTTGATGAAGCCAGG
TCATACATCGACCAGCACTACGATTTGCGCGAGACCTGCGTCCTGACCGGCAGTGATAATGGGTCTGGTTATAGTCCTAAGGCGTTCAAGGAGTTGGTCC
CGGGCGCCGCTAGGTGGGCGCACGTGCTAGACGACTACCACCTGAATCGCAAGCTCAAGGAGCGGTTCAGCATGATGCCACGTGATCTGCAAGACCTACT
CCGCAAGTCAGTTTGGACTGGCAACAAGGCCAGAACAGAGATGGTCTTGGATACCGCGGAAAGCATGGTTCAAGACACCGATTCAGGGGACTCAATGTGC
AGTGAATGGCTCGATAATCTCACCAAGCTTCGGCGCTATCTTGACCGAAATTGGCCTTACATCGAGGCACTTTCGAATCGACAATTGGATCGGCGTGGAC
TTGGAAGCTGTGAGTCTAACCATAGACGGTATACGTATCGGACCAAGCTGCAGGGCCGTTCATGGACAAGAAGTGGTCTGATCGCAGAGTTGAGGATCAT
TGACGCGCTGCAGAACGATGATTGCCTCAGCAGTCTGGAAGCTACGGCGTTTCTGGAAACGCAAATCAAGCCAGAAGTGAAGACCACGCTTCGGAGCCTT
CAGCTGTTTGGGCCAGCGCCCACAACGCACCAGGGTGCTTATCAGGGACGTATAGCGCTGTACGCAAGTACTAGTTCGGGCACTGGTCACCTAGCACACA
TCTTCAACTGAACCCACTCAGTAGACCAGGATGACCGGCAGTCGAGCAAAAAAGAATAGTTCAATTAGTGGAACCGAGAAAGACTTGACACATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1398 bp | 465 aa | 114 | 1511 | + | No |
Chemistry : DDE
ORF sequence :
MSSIVAIVLEALKSNDSIISAESQMMTELSQLVCAGVAQACEQLDDDLCLGHKDYRIIHKDQRHITAMFGDVVFKQRLVKDDSGRLFYPFDEKVGLATGR
RFTPMIMAKVAELASLTVMRTTAKAVDLLTPFSMSAMTVDNLVREAGQELDTVREAEAKYVTVEVDRRAVPQLFIEGDAFEVKLKHGTQVMVHRVQISEG
VTQSGKRHQLINRHSITGLSHEKVFDEARSYIDQHYDLRETCVLTGSDNGSGYSPKAFKELVPGAARWAHVLDDYHLNRKLKERFSMMPRDLQDLLRKSV
WTGNKARTEMVLDTAESMVQDTDSGDSMCSEWLDNLTKLRRYLDRNWPYIEALSNRQLDRRGLGSCESNHRRYTYRTKLQGRSWTRSGLIAELRIIDALQ
NDDCLSSLEATAFLETQIKPEVKTTLRSLQLFGPAPTTHQGAYQGRIALYASTSSGTGHLAHIFN
RFTPMIMAKVAELASLTVMRTTAKAVDLLTPFSMSAMTVDNLVREAGQELDTVREAEAKYVTVEVDRRAVPQLFIEGDAFEVKLKHGTQVMVHRVQISEG
VTQSGKRHQLINRHSITGLSHEKVFDEARSYIDQHYDLRETCVLTGSDNGSGYSPKAFKELVPGAARWAHVLDDYHLNRKLKERFSMMPRDLQDLLRKSV
WTGNKARTEMVLDTAESMVQDTDSGDSMCSEWLDNLTKLRRYLDRNWPYIEALSNRQLDRRGLGSCESNHRRYTYRTKLQGRSWTRSGLIAELRIIDALQ
NDDCLSSLEATAFLETQIKPEVKTTLRSLQLFGPAPTTHQGAYQGRIALYASTSSGTGHLAHIFN
Blast result :
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References