ISTte3
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE008691 | ND | Thermoanaerobacter tengcongensis | Thermoanaerobacter mathranii subsp. mathranii str. A3 Thermoanaerobacter tengcongensis MB4 Thermoanaerobacter wiegelii Rt8.B1 Thermoanaerobacter italicus Ab9 Carboxydibrachium pacificum DSM 12653 |
DNA section
IS Length : 1589 bp
Ends
IR Length : 23/31
IRL : CATAGTGTAAAATTATCGTAGGATTTTTAAAGTGAAAAAACAAGAGACAA
IRR : GATAGTGTCAAGATACTGTAGGATTTTTTTAAGACAACCCCTGAAACTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATACTTTTTA | GAAATAAAT | TCAAAAACTT | 9 |
GAGCATAACG | TGTAAGATA | AATAACTGTC | 9 |
CCCGCAATTA | ATGTGTCTC | CCGTTACTTG | 9 |
TTTCATCTTT | GTCCAAATAT | AATTTTATTT | 10 |
TTTTTTTAGA | CAAATAAA | TGCCATTATT | 8 |
AAAGAGGTAA | TTTGGCTTT | CACCAAATTA | 9 |
AATGTTCCTT | CATGTCCAT | AAATTACTTG | 9 |
GAATTTAATA | AAAAGTTGAA | AAAAAGTTGA | 10 |
TTCCTCCTTT | TTAAGGAGGG | TAGAGTGTTG | 10 |
TGACAGTTTA | AAGAAGGAA | AGGAAATTTG | 9 |
TGCTAACAACCCGAATTATA | CCGATTATAATTCATTTTGA | 0 |
DNA sequence
CATAGTGTAAAATTATCGTAGGATTTTTAAAGTGAAAAAACAAGAGACAACCCCTGTGATAAAATAGATTGTGGAAAACAAAAAACACGAAAGGGGTGTC
TCTTGTGAAAAAACATATTTTTGAGGATATTATACTACAAAATGCTCTAAATTTCACTAGGGAAATGATGAATGTTTTTGAGGATTTATTAAAGAATGGA
ATGAATATTACAGAGCTTGTAGCAAGGATAAAAGAACTTACGGACAAACTAGGTAGAGAGGCAATAGAAGCAATTATTGAGGAGTTAGATAGGATAATAA
AAGAAGACAAGAGAAGGAAAGAAAAATGGGTAGTAGAGAGGAAAGATAAAAAGAGATTAACGACAGTCCTTGGGGATATTGAATATGAGAGGACATATTA
CAAATCAAGGGAGGATGGTAGATATACATATTTAGTGGATGATGCATTAGAGATAGGACGGCACGAGAGGATAGAAAAGGGAGTAAAAATAAAGTTAGTA
GAAAATGCGATAGAAGAATCATACGAGAAAAGTAGCGAGAAAGCATGTCCAGAGAAAATAAGTAAACAGACGGTATTAAACGCAATAAGGGAAATAGGAG
AAGTAGAGGTGAAGAGAGAAATAAAAGAGAAGAAGGAAGTAAGGGTTTTATACATAGAAGCAGATGAAGACCATGTACCTTTACAAGATGGCAGCAGTGA
AACACCGCGATTGATATACATACATGAAGGTAGGGAAGAGAAAAACGGAAGGAACGTACTGAAGAATGTGTATTACAAGGCATACGTAGGAGAGAAAGCA
GAAGACATATGGATAGATGTAGCGAATTACATAGAAGAAAATTACAAGGAAGAGAAGATAGAGAAGATATACATAGCAGGAGATGGAGCACCATGGATAA
AAGAGGGATTAGAATGGATAGTAAAATCAAGGTTTGTGTTAGACAGATATCATTTAAACAAATACGTATTAAAAGCAACATCAAAAGAGCCAAAGTATAG
GGATAAGATATGGAGAGCAATAAATGAAGGGGATAAAGAAGGAGTGAAGAAAATATTTGGTGAGTTAATAAAGATAGCAAAAGAAGAGAAAGAAAAAGAA
AAGATAAAGGAAGCGAAGAGATACATACTAAACAATTGGGAAGGGATAAAGATATACAGTGAAGACGAAGATGTAATAGGGTGCAGTGCAGAAGGGCATA
TAAGCCATGTATTTTCTGCAAGACTTAGCAGGAATCCATTAGGGTGGAGCAGAGAAGGATTAAAGTTAATGGCGAAATTAAGGGTATTTAGCAAGAATGG
AGGAGACTTAAGAGAAGTAGAGTGGGGCAAGAAAAAGAATATAAATGCAGGAAGTTACAAATTAACAGAGAAGCAAATAAAAGAGGCAGTAAGGAGAGTT
AAAACGTCTACAAATGAAAAAATAAACAATATTACGGTTTTGAATATAGGGAAAGTAACGCCAATATATAGGGTTTTAAGAGCATTAAAATATGCACAAG
TTATATAAAGAACATGATAAAACGAAGCCCTGAATTAATTAAGTTTCAGGGGTTGTCTTAAAAAAATCCTACAGTATCTTGACACTATC
TCTTGTGAAAAAACATATTTTTGAGGATATTATACTACAAAATGCTCTAAATTTCACTAGGGAAATGATGAATGTTTTTGAGGATTTATTAAAGAATGGA
ATGAATATTACAGAGCTTGTAGCAAGGATAAAAGAACTTACGGACAAACTAGGTAGAGAGGCAATAGAAGCAATTATTGAGGAGTTAGATAGGATAATAA
AAGAAGACAAGAGAAGGAAAGAAAAATGGGTAGTAGAGAGGAAAGATAAAAAGAGATTAACGACAGTCCTTGGGGATATTGAATATGAGAGGACATATTA
CAAATCAAGGGAGGATGGTAGATATACATATTTAGTGGATGATGCATTAGAGATAGGACGGCACGAGAGGATAGAAAAGGGAGTAAAAATAAAGTTAGTA
GAAAATGCGATAGAAGAATCATACGAGAAAAGTAGCGAGAAAGCATGTCCAGAGAAAATAAGTAAACAGACGGTATTAAACGCAATAAGGGAAATAGGAG
AAGTAGAGGTGAAGAGAGAAATAAAAGAGAAGAAGGAAGTAAGGGTTTTATACATAGAAGCAGATGAAGACCATGTACCTTTACAAGATGGCAGCAGTGA
AACACCGCGATTGATATACATACATGAAGGTAGGGAAGAGAAAAACGGAAGGAACGTACTGAAGAATGTGTATTACAAGGCATACGTAGGAGAGAAAGCA
GAAGACATATGGATAGATGTAGCGAATTACATAGAAGAAAATTACAAGGAAGAGAAGATAGAGAAGATATACATAGCAGGAGATGGAGCACCATGGATAA
AAGAGGGATTAGAATGGATAGTAAAATCAAGGTTTGTGTTAGACAGATATCATTTAAACAAATACGTATTAAAAGCAACATCAAAAGAGCCAAAGTATAG
GGATAAGATATGGAGAGCAATAAATGAAGGGGATAAAGAAGGAGTGAAGAAAATATTTGGTGAGTTAATAAAGATAGCAAAAGAAGAGAAAGAAAAAGAA
AAGATAAAGGAAGCGAAGAGATACATACTAAACAATTGGGAAGGGATAAAGATATACAGTGAAGACGAAGATGTAATAGGGTGCAGTGCAGAAGGGCATA
TAAGCCATGTATTTTCTGCAAGACTTAGCAGGAATCCATTAGGGTGGAGCAGAGAAGGATTAAAGTTAATGGCGAAATTAAGGGTATTTAGCAAGAATGG
AGGAGACTTAAGAGAAGTAGAGTGGGGCAAGAAAAAGAATATAAATGCAGGAAGTTACAAATTAACAGAGAAGCAAATAAAAGAGGCAGTAAGGAGAGTT
AAAACGTCTACAAATGAAAAAATAAACAATATTACGGTTTTGAATATAGGGAAAGTAACGCCAATATATAGGGTTTTAAGAGCATTAAAATATGCACAAG
TTATATAAAGAACATGATAAAACGAAGCCCTGAATTAATTAAGTTTCAGGGGTTGTCTTAAAAAAATCCTACAGTATCTTGACACTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1404 bp | 467 aa | 105 | 1508 | + | No |
Chemistry : DDE
ORF sequence :
MKKHIFEDIILQNALNFTREMMNVFEDLLKNGMNITELVARIKELTDKLGREAIEAIIEELDRIIKEDKRRKEKWVVERKDKKRLTTVLGDIEYERTYYK
SREDGRYTYLVDDALEIGRHERIEKGVKIKLVENAIEESYEKSSEKACPEKISKQTVLNAIREIGEVEVKREIKEKKEVRVLYIEADEDHVPLQDGSSET
PRLIYIHEGREEKNGRNVLKNVYYKAYVGEKAEDIWIDVANYIEENYKEEKIEKIYIAGDGAPWIKEGLEWIVKSRFVLDRYHLNKYVLKATSKEPKYRD
KIWRAINEGDKEGVKKIFGELIKIAKEEKEKEKIKEAKRYILNNWEGIKIYSEDEDVIGCSAEGHISHVFSARLSRNPLGWSREGLKLMAKLRVFSKNGG
DLREVEWGKKKNINAGSYKLTEKQIKEAVRRVKTSTNEKINNITVLNIGKVTPIYRVLRALKYAQVI
SREDGRYTYLVDDALEIGRHERIEKGVKIKLVENAIEESYEKSSEKACPEKISKQTVLNAIREIGEVEVKREIKEKKEVRVLYIEADEDHVPLQDGSSET
PRLIYIHEGREEKNGRNVLKNVYYKAYVGEKAEDIWIDVANYIEENYKEEKIEKIYIAGDGAPWIKEGLEWIVKSRFVLDRYHLNKYVLKATSKEPKYRD
KIWRAINEGDKEGVKKIFGELIKIAKEEKEKEKIKEAKRYILNNWEGIKIYSEDEDVIGCSAEGHISHVFSARLSRNPLGWSREGLKLMAKLRVFSKNGG
DLREVEWGKKKNINAGSYKLTEKQIKEAVRRVKTSTNEKINNITVLNIGKVTPIYRVLRALKYAQVI
Blast result :
Comments
IS of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References