ISTte3

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE008691 ND Thermoanaerobacter tengcongensis
Thermoanaerobacter mathranii subsp. mathranii str. A3
Thermoanaerobacter tengcongensis MB4
Thermoanaerobacter wiegelii Rt8.B1
Thermoanaerobacter italicus Ab9
Carboxydibrachium pacificum DSM 12653
DNA section
IS Length : 1589 bp

Ends


IR Length : 23/31

IRL : CATAGTGTAAAATTATCGTAGGATTTTTAAAGTGAAAAAACAAGAGACAA
IRR : GATAGTGTCAAGATACTGTAGGATTTTTTTAAGACAACCCCTGAAACTTA

Insertion site


Left flankDirect repeatRight flankDR Length
ATACTTTTTAGAAATAAATTCAAAAACTT9
GAGCATAACGTGTAAGATAAATAACTGTC9
CCCGCAATTAATGTGTCTCCCGTTACTTG9
TTTCATCTTTGTCCAAATATAATTTTATTT10
TTTTTTTAGACAAATAAATGCCATTATT8
AAAGAGGTAATTTGGCTTTCACCAAATTA9
AATGTTCCTTCATGTCCATAAATTACTTG9
GAATTTAATAAAAAGTTGAAAAAAAGTTGA10
TTCCTCCTTTTTAAGGAGGGTAGAGTGTTG10
TGACAGTTTAAAGAAGGAAAGGAAATTTG9
TGCTAACAACCCGAATTATACCGATTATAATTCATTTTGA0

DNA sequence

CATAGTGTAAAATTATCGTAGGATTTTTAAAGTGAAAAAACAAGAGACAACCCCTGTGATAAAATAGATTGTGGAAAACAAAAAACACGAAAGGGGTGTC
TCTTGTGAAAAAACATATTTTTGAGGATATTATACTACAAAATGCTCTAAATTTCACTAGGGAAATGATGAATGTTTTTGAGGATTTATTAAAGAATGGA
ATGAATATTACAGAGCTTGTAGCAAGGATAAAAGAACTTACGGACAAACTAGGTAGAGAGGCAATAGAAGCAATTATTGAGGAGTTAGATAGGATAATAA
AAGAAGACAAGAGAAGGAAAGAAAAATGGGTAGTAGAGAGGAAAGATAAAAAGAGATTAACGACAGTCCTTGGGGATATTGAATATGAGAGGACATATTA
CAAATCAAGGGAGGATGGTAGATATACATATTTAGTGGATGATGCATTAGAGATAGGACGGCACGAGAGGATAGAAAAGGGAGTAAAAATAAAGTTAGTA
GAAAATGCGATAGAAGAATCATACGAGAAAAGTAGCGAGAAAGCATGTCCAGAGAAAATAAGTAAACAGACGGTATTAAACGCAATAAGGGAAATAGGAG
AAGTAGAGGTGAAGAGAGAAATAAAAGAGAAGAAGGAAGTAAGGGTTTTATACATAGAAGCAGATGAAGACCATGTACCTTTACAAGATGGCAGCAGTGA
AACACCGCGATTGATATACATACATGAAGGTAGGGAAGAGAAAAACGGAAGGAACGTACTGAAGAATGTGTATTACAAGGCATACGTAGGAGAGAAAGCA
GAAGACATATGGATAGATGTAGCGAATTACATAGAAGAAAATTACAAGGAAGAGAAGATAGAGAAGATATACATAGCAGGAGATGGAGCACCATGGATAA
AAGAGGGATTAGAATGGATAGTAAAATCAAGGTTTGTGTTAGACAGATATCATTTAAACAAATACGTATTAAAAGCAACATCAAAAGAGCCAAAGTATAG
GGATAAGATATGGAGAGCAATAAATGAAGGGGATAAAGAAGGAGTGAAGAAAATATTTGGTGAGTTAATAAAGATAGCAAAAGAAGAGAAAGAAAAAGAA
AAGATAAAGGAAGCGAAGAGATACATACTAAACAATTGGGAAGGGATAAAGATATACAGTGAAGACGAAGATGTAATAGGGTGCAGTGCAGAAGGGCATA
TAAGCCATGTATTTTCTGCAAGACTTAGCAGGAATCCATTAGGGTGGAGCAGAGAAGGATTAAAGTTAATGGCGAAATTAAGGGTATTTAGCAAGAATGG
AGGAGACTTAAGAGAAGTAGAGTGGGGCAAGAAAAAGAATATAAATGCAGGAAGTTACAAATTAACAGAGAAGCAAATAAAAGAGGCAGTAAGGAGAGTT
AAAACGTCTACAAATGAAAAAATAAACAATATTACGGTTTTGAATATAGGGAAAGTAACGCCAATATATAGGGTTTTAAGAGCATTAAAATATGCACAAG
TTATATAAAGAACATGATAAAACGAAGCCCTGAATTAATTAAGTTTCAGGGGTTGTCTTAAAAAAATCCTACAGTATCTTGACACTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1404 bp467 aa1051508+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKHIFEDIILQNALNFTREMMNVFEDLLKNGMNITELVARIKELTDKLGREAIEAIIEELDRIIKEDKRRKEKWVVERKDKKRLTTVLGDIEYERTYYK
SREDGRYTYLVDDALEIGRHERIEKGVKIKLVENAIEESYEKSSEKACPEKISKQTVLNAIREIGEVEVKREIKEKKEVRVLYIEADEDHVPLQDGSSET
PRLIYIHEGREEKNGRNVLKNVYYKAYVGEKAEDIWIDVANYIEENYKEEKIEKIYIAGDGAPWIKEGLEWIVKSRFVLDRYHLNKYVLKATSKEPKYRD
KIWRAINEGDKEGVKKIFGELIKIAKEEKEKEKIKEAKRYILNNWEGIKIYSEDEDVIGCSAEGHISHVFSARLSRNPLGWSREGLKLMAKLRVFSKNGG
DLREVEWGKKKNINAGSYKLTEKQIKEAVRRVKTSTNEKINNITVLNIGKVTPIYRVLRALKYAQVI

 

Blast result :
Comments
IS of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References