ISBj6_B
- Family IS701
- Group
Isoform Synonym(s) ISB20
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004463 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA 110 |
DNA section
IS Length : 1447 bp
Ends
IR Length : 18/19
IRL : CACTACTTTGGCAGATTGTTGATTTTGCCGCGTTTTATAGGATTCCCGAA
IRR : CACTACTTTGGCAGAATGTGTTTTGGCCGCTGTTTTTCAAGGATTTGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTAGCCTCA | CTAG | GGTCCAGACT | 4 |
DNA sequence
CACTACTTTGGCAGATTGTTGATTTTGCCGCGTTTTATAGGATTCCCGAATCAATTTTTCAATGATTCATGGGTGGTCGGCTCTTGGAGGGCTGACCATG
CCGGGATGGGAAGACGAACTCGAACGCTGGCTGATGCCGTTCTTGGACCGGCTGGGTCATAAGACCCGGCAGCGGATGTGTCCTCTGTATGTTGCGGGAT
TGATCGGTCCTGGCGATCGCAAGAGCGTTCAGCCGATGGCGGAACGCCTTGTCACGAGCAACTACGACCAGTTGCACCATTTCATTGCCGACGGTGTCTG
GGACGCGACGCCGCTGGAGACAGAGCTGCTCAACCAGGCGGACCGACTCGTCGGCGGCAGGGATGCGGTGCTGGTTATTGATGACACCTCACTGCCGAAG
AAGGGTGAGCGACCGGTCGGTGTTGCGGCGCAATACGCATCGGCTCTCGGTAAAACTGCAAATTGCCAAACGCTGGTGTCTTTAACGCTTGCGCGCGGCG
AAGTGCCAGTGATGGTCGCGTTACGTCTCTTTCTGCCTGACAGCTGGACAAGCGACATGCCCCGTTTGAAGCGCGCTCGCGTGCCAATCGAACACCGAAC
GCCACGGTCCAAGCCGGAGATCGCTTTGGCCGAGATTGACCGCGCGATGGCAGCCAACATGCGCTTTGGATGTGTGCTGGCGGATGCAGGATACGGCCTC
AGCGCACCGTTTCGACAAGGGCTAACAGAGCGCGGGCTGGCCTGGGCGGTCGGTATCCCTCGGCACCAGAAAGTGTATCCCGTCGATGTGAAGCTCATTT
GGCCGATCACCAAAGTCCGTGGCAAACCACGAAAGCACCACGTGCCCGATATCTTATCGATTGCGGCAGAACAAATGCTGGCCAGCGCCAAATGGAAAAC
CGTGAGTTGGCGTAGCGGGACGAAAGGTCGGCTCAAAGCCCGATTTGCTGCCCTCCGTGTCCGCACCGCCGACGGCCCTCCGCAGCGGATATGGGATAAA
GGTCAGCAGCATCTCCCAGGCGACGAAGTCTGGCTCATTGGCGAGCAACGTGCCTCCGGGGAGAGCAAATACTATCTCGCCAATCTTCCGGCGACGACGG
ATCTGCGCACGCTGGCCGCCACCATCAAGGCACGGTGGATTTGTGAGCAGGCGCATCAACAGTTGAAGGAGGAGCTTGGACTTGATCACTTCGAAGGGCG
ATCATGGCAAGGTCTTCATCGCCACGCCCTTATGACAATGATTGCCTACGCCTTCCTGCAACATCGTCGCCTCGCATACGCGGGGCGGAAAAAAAAGAAT
CAACGGGCCTCCGCCTCAACCAACCATGCCCGCCGTACGCCATGCCATCGTCGATCTCATCCTTCGGCCGCCGCCTCAGCAATGCCCATATTGCCGAAAG
CAAATCCTTGAAAAACAGCGGCCAAAACACATTCTGCCAAAGTAGTG
CCGGGATGGGAAGACGAACTCGAACGCTGGCTGATGCCGTTCTTGGACCGGCTGGGTCATAAGACCCGGCAGCGGATGTGTCCTCTGTATGTTGCGGGAT
TGATCGGTCCTGGCGATCGCAAGAGCGTTCAGCCGATGGCGGAACGCCTTGTCACGAGCAACTACGACCAGTTGCACCATTTCATTGCCGACGGTGTCTG
GGACGCGACGCCGCTGGAGACAGAGCTGCTCAACCAGGCGGACCGACTCGTCGGCGGCAGGGATGCGGTGCTGGTTATTGATGACACCTCACTGCCGAAG
AAGGGTGAGCGACCGGTCGGTGTTGCGGCGCAATACGCATCGGCTCTCGGTAAAACTGCAAATTGCCAAACGCTGGTGTCTTTAACGCTTGCGCGCGGCG
AAGTGCCAGTGATGGTCGCGTTACGTCTCTTTCTGCCTGACAGCTGGACAAGCGACATGCCCCGTTTGAAGCGCGCTCGCGTGCCAATCGAACACCGAAC
GCCACGGTCCAAGCCGGAGATCGCTTTGGCCGAGATTGACCGCGCGATGGCAGCCAACATGCGCTTTGGATGTGTGCTGGCGGATGCAGGATACGGCCTC
AGCGCACCGTTTCGACAAGGGCTAACAGAGCGCGGGCTGGCCTGGGCGGTCGGTATCCCTCGGCACCAGAAAGTGTATCCCGTCGATGTGAAGCTCATTT
GGCCGATCACCAAAGTCCGTGGCAAACCACGAAAGCACCACGTGCCCGATATCTTATCGATTGCGGCAGAACAAATGCTGGCCAGCGCCAAATGGAAAAC
CGTGAGTTGGCGTAGCGGGACGAAAGGTCGGCTCAAAGCCCGATTTGCTGCCCTCCGTGTCCGCACCGCCGACGGCCCTCCGCAGCGGATATGGGATAAA
GGTCAGCAGCATCTCCCAGGCGACGAAGTCTGGCTCATTGGCGAGCAACGTGCCTCCGGGGAGAGCAAATACTATCTCGCCAATCTTCCGGCGACGACGG
ATCTGCGCACGCTGGCCGCCACCATCAAGGCACGGTGGATTTGTGAGCAGGCGCATCAACAGTTGAAGGAGGAGCTTGGACTTGATCACTTCGAAGGGCG
ATCATGGCAAGGTCTTCATCGCCACGCCCTTATGACAATGATTGCCTACGCCTTCCTGCAACATCGTCGCCTCGCATACGCGGGGCGGAAAAAAAAGAAT
CAACGGGCCTCCGCCTCAACCAACCATGCCCGCCGTACGCCATGCCATCGTCGATCTCATCCTTCGGCCGCCGCCTCAGCAATGCCCATATTGCCGAAAG
CAAATCCTTGAAAAACAGCGGCCAAAACACATTCTGCCAAAGTAGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 449 aa | 62 | 1408 | + | No |
Chemistry : DDE
ORF sequence :
MIHGWSALGGLTMPGWEDELERWLMPFLDRLGHKTRQRMCPLYVAGLIGPGDRKSVQPMAERLVTSNYDQLHHFIADGVWDATPLETELLNQADRLVGGR
DAVLVIDDTSLPKKGERPVGVAAQYASALGKTANCQTLVSLTLARGEVPVMVALRLFLPDSWTSDMPRLKRARVPIEHRTPRSKPEIALAEIDRAMAANM
RFGCVLADAGYGLSAPFRQGLTERGLAWAVGIPRHQKVYPVDVKLIWPITKVRGKPRKHHVPDILSIAAEQMLASAKWKTVSWRSGTKGRLKARFAALRV
RTADGPPQRIWDKGQQHLPGDEVWLIGEQRASGESKYYLANLPATTDLRTLAATIKARWICEQAHQQLKEELGLDHFEGRSWQGLHRHALMTMIAYAFLQ
HRRLAYAGRKKKNQRASASTNHARRTPCHRRSHPSAAASAMPILPKANP
DAVLVIDDTSLPKKGERPVGVAAQYASALGKTANCQTLVSLTLARGEVPVMVALRLFLPDSWTSDMPRLKRARVPIEHRTPRSKPEIALAEIDRAMAANM
RFGCVLADAGYGLSAPFRQGLTERGLAWAVGIPRHQKVYPVDVKLIWPITKVRGKPRKHHVPDILSIAAEQMLASAKWKTVSWRSGTKGRLKARFAALRV
RTADGPPQRIWDKGQQHLPGDEVWLIGEQRASGESKYYLANLPATTDLRTLAATIKARWICEQAHQQLKEELGLDHFEGRSWQGLHRHALMTMIAYAFLQ
HRRLAYAGRKKKNQRASASTNHARRTPCHRRSHPSAAASAMPILPKANP
Blast result :
Comments
ISBj6_B is 50% aa similar to ISRso17. ISBj6_B was found by screening completely sequenced genomes for sequences homologous to the IS701 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-100-D(N3)-153-E(C1). The copy number in Bradyrhizobium japonicum USDA 110 is 2, yet the first 12 base pairs of one of these copies are missing.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2006)Unpublished
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2006)Unpublished