ISFsp6

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Frankia sp.
Frankia sp. EAN1pec
DNA section
IS Length : 1472 bp

Ends


IR Length : 15

IRL : CAATACCAGGAACTTAGCATCTGATCGTGTAGGTTCGGTGGGTGCCGAGA
IRR : CAATACCAGGAACTTTAGGTTCGGATCAGGATTGTGGCGACCGTGGGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
GCCCGGCGGCGGTGCGGGGT0

DNA sequence

CAATACCAGGAACTTAGCATCTGATCGTGTAGGTTCGGTGGGTGCCGAGACGCGGTCAGGTCAAGGAGAAGCCCGAGGACCGGTTGGTGGACCGGGTCGG
GTTGGGGGTGCTGGCGGCGCAGTTCCCGGACGCGCTGGTCGACCGGGTGGTCGCTGAGACCGGGCGGCGTGAGCGGCGGACGCGGGACCTGCCGGCGGCG
TTGACCCTGCGGTATGTGGTGGCGTTGGCGTTGTTCCCGTCGGACGGCTACGACGAGGTGATGCGGCAGGTGAAGGTCGCCGACGACTGGCTGTCGGACA
AGGCCGGCCCGGTGAAGGTGCCCGCGACCACGGCGATCACGAAGGCGCGGGACCGGCTCGGGGTGGAGCCGGTGAAGCTGCTGTTCGAGCGCACGGCGGT
GCCGATGGCCCTGCCCCGGCGGACGGTGGGGGCGTTCTACCGGGGCTGGCGGGTGTGCACGGTCGACGGGACGACGCTGCTGGTCCCGGACACCGACGAG
AACGCCGCCGCGTTCGGTAAGCCCGGCAACGACCAGGGCGAGGGCGCGTTGCCGCAGGTCCGGGTGCTCGGGCTGGTCGAGTGCGGCACCCGGGCGCTGC
TGGGCGCCGGGTTCGGCGGGACCGGGGGGTCCAAGGCTGCCAGCGAGCAGGCCCTGTTCCCCGACCTGCTCGGCGCGTTGCGCCCGGGCATGCTGGTGCT
GGCCGACCGGAACTTCCTCGGCTTCGAGTTGTTCGCCAAGGCCGCCGCGACCGGCGCGGACCTGCTGTGGCGGGCCAAGTCCGACCGGCGCCTGCCCATC
GACACCGAGCTCGCCGACGGCTCTTACCTGTCCCACCTCGTCGAACCCGGCACCCGAGACAAAGGCCGGAAAATCACGGTACGGGTCGTCGAGTACACCC
TCGACCGCGACCCCGACAGCCCCCTGCCCGCGGGCAAGAAGGAGACCTACCGGCTGGTCACCACAATCCTCGATCCCGACGCCGCGCCCGCCACCGACCT
GGCCGCGCTCTACAGCGACCGGTGGGAAGTCGAGACCCTCCTCGACGAAATCAAGGTCCACCAGCAGGACGGCCGGCTGGTGCTGCGGTCCCGGGCCCCC
GACCGGGTCGAGCAGGAGGTCTGGGGCGTCCTGCTGCTGCACCGGGCGTTACGGAAACTGATCCACGACACCGCGCTGGTCGAAGGGATCGACCCCGACC
GGCTCTCCTTCACCCACACCGTGACGATCGTCCGCCGCCAGGTTGTGCGCCGGGCGATTTTCCCCCCTCCGCCGGACGGCCCGGATCCTGGCCGCGGTGA
CCACTGAGATCGCCGAACACGTCCTCCCGAAACGCCTCCGCTCCAATCCCCGGGTCGTCCGGCGGACCAAGCGCACCCCGTTCCCCGCCAAGAAGCCGAT
CGACAAGCACCTCACGGGACTGCCACCCACGGTCGCCACAATCCTGATCCGAACCTAAAGTTCCTGGTATTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1263 bp421 aa421304+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRRGQVKEKPEDRLVDRVGLGVLAAQFPDALVDRVVAETGRRERRTRDLPAALTLRYVVALALFPSDGYDEVMRQVKVADDWLSDKAGPVKVPATTAIT
KARDRLGVEPVKLLFERTAVPMALPRRTVGAFYRGWRVCTVDGTTLLVPDTDENAAAFGKPGNDQGEGALPQVRVLGLVECGTRALLGAGFGGTGGSKAA
SEQALFPDLLGALRPGMLVLADRNFLGFELFAKAAATGADLLWRAKSDRRLPIDTELADGSYLSHLVEPGTRDKGRKITVRVVEYTLDRDPDSPLPAGKK
ETYRLVTTILDPDAAPATDLAALYSDRWEVETLLDEIKVHQQDGRLVLRSRAPDRVEQEVWGVLLLHRALRKLIHDTALVEGIDPDRLSFTHTVTIVRRQ
VVRRAIFPPPPDGPDPGRGDH

 

Blast result :
Comments
ISFsp6 is 59% aa similar to ISFsp5. ISFsp6 was found by screening completely sequenced genomes for sequences homologous to the ISAva1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-79-D(N3)-108-E(C1). The sequencing of the Frankia sp. EAN1pec chromosome is currently in progress. Accession: NZ_AAII00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Unpublished.