ISDha2
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 Desulfitobacterium hafniense Y51 |
DNA section
IS Length : 1594 bp
Ends
IR Length : 16/17
IRL : CAGTAGCGTTGCATAAAGCTAACAACAAAAATGTCAAAGCTCAAATTTAG
IRR : CAGTAGCGTTGCATTAAATTAAGATGGTTACTGTCAAGGGAAAATTCGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTTTGCTTA | TTTTTAACT | AGAATGTATT | 9 |
DNA sequence
CAGTAGCGTTGCATAAAGCTAACAACAAAAATGTCAAAGCTCAAATTTAGCTAAATTTAAGCAAATAGACCCGAAATCAGCGTATATTCCTGATTATCAC
TGTAAATACACATAAAAAATCCTTATAATAAGAGATAGGGTAGTCCTTGCCCAAATCTCAAATTATAAGGAGATTTAAAATGCAGGACAAGGATACTACG
CATTCCACATTTATGCAAGCCTTTCAGCCGCTTTTTTCAAAAGATTTATGGAAAGATATCCATCAGCAGGTCCCAGACCTCGATCGCAGGACCCAAAAAC
TAAAGACAAATCAACTCACTCTCCTCATTAGTAACGCACAACTTCAAGAATACAGAGCTTTACGAAAGATCAGTACGAGCGTTCTAAGTGACAATCTTGG
TCAAGCCATCGGTTTAAAGAGCATTAGTCACAGTCAGATTTCTCGAAGGTTAAAGACTTTGCCTACTAAGGTTTCGGAAATGCTCTTTAGGCGCACTTTA
CACAAAGTAGCTCAAAAGCAAGGGTATGGGAAGATTCGGCAGCAACTCGGTAAATTGTACATGATTGACGCATCGACTATCAGCCTATGCCTTTCCCGTT
ATCCCTGGGCCGTGTTCAGAAAGAGCAAAGCCGGTGTAAAAATACATCTACGCTTAAGCTTTGATGGAATAGCTCTACCCGATGAAGTGGTCATTACCCC
AGCCAAAATAGCCGATCGCAAGAAGCTGGATGAACTTATTGTTGAAGATAAGGATGCCCTCAATATTTTTGATCGAGGTTATGTGGACTACGAGCTATTT
GATGATTACTGCGAAAAAGGGATACGCTTTGTTACTCGTCTCAAAAACAACGCAATCATGGAGTTTACAGGCGTTGAGCGTCCCGTAGAAGAAGATGGGA
TTATCGAGGAAGACGTGGATATCATCCTAGGAACAGGTTCCCGAAAAATGAAGCATACCCTCCGGGAAGTGACCATAGATGATACCATCAACGAACCCTT
TACGATCTTGACCAATGATTTTGAACTAAGTGCCGAAGAACTGGGTGAGATCTATCGTTATCGCTGGCAGATTGAATTGTTCTTTAAATGGCTCAAGCAG
CACGCTCAAATTAAACACTTTTACGGTACAAGCGAAACCGCAGTAACCAACCAAATTCTATTAGCACTGATGACTTATTGTTCTTTAATGCTGCTTAAAC
TTGAAGTGGAATATCCAAGAGACTTGCTCACCTTGCAAAGACTACTGATTACCTGTCTCTTTGAGAGCTATGAGGAGTTTTTAGAAAAACTCCGACGACG
AAGAAGGAAAGCTGCCAAAAGGATTAACCATGAAAAGATCTACCAAATGACAGAGCATTACATCATCACTGAGGAAGACACAGGATGGTTAAATGACTTG
ATATATGACCCTGTGATTCTGTGAGATAATATGTGTAAAAATGTGGAAAAGGGCTATCTGTTGCCTGGTCTTTCTTTGGACTGAGGGGAGTAAACTCGGA
TGGTTGTATACACCAATTATGATAAATAATTGAAGGAGACCTGAGGCGAATTTTCCCTTGACAGTAACCATCTTAATTTAATGCAACGCTACTG
TGTAAATACACATAAAAAATCCTTATAATAAGAGATAGGGTAGTCCTTGCCCAAATCTCAAATTATAAGGAGATTTAAAATGCAGGACAAGGATACTACG
CATTCCACATTTATGCAAGCCTTTCAGCCGCTTTTTTCAAAAGATTTATGGAAAGATATCCATCAGCAGGTCCCAGACCTCGATCGCAGGACCCAAAAAC
TAAAGACAAATCAACTCACTCTCCTCATTAGTAACGCACAACTTCAAGAATACAGAGCTTTACGAAAGATCAGTACGAGCGTTCTAAGTGACAATCTTGG
TCAAGCCATCGGTTTAAAGAGCATTAGTCACAGTCAGATTTCTCGAAGGTTAAAGACTTTGCCTACTAAGGTTTCGGAAATGCTCTTTAGGCGCACTTTA
CACAAAGTAGCTCAAAAGCAAGGGTATGGGAAGATTCGGCAGCAACTCGGTAAATTGTACATGATTGACGCATCGACTATCAGCCTATGCCTTTCCCGTT
ATCCCTGGGCCGTGTTCAGAAAGAGCAAAGCCGGTGTAAAAATACATCTACGCTTAAGCTTTGATGGAATAGCTCTACCCGATGAAGTGGTCATTACCCC
AGCCAAAATAGCCGATCGCAAGAAGCTGGATGAACTTATTGTTGAAGATAAGGATGCCCTCAATATTTTTGATCGAGGTTATGTGGACTACGAGCTATTT
GATGATTACTGCGAAAAAGGGATACGCTTTGTTACTCGTCTCAAAAACAACGCAATCATGGAGTTTACAGGCGTTGAGCGTCCCGTAGAAGAAGATGGGA
TTATCGAGGAAGACGTGGATATCATCCTAGGAACAGGTTCCCGAAAAATGAAGCATACCCTCCGGGAAGTGACCATAGATGATACCATCAACGAACCCTT
TACGATCTTGACCAATGATTTTGAACTAAGTGCCGAAGAACTGGGTGAGATCTATCGTTATCGCTGGCAGATTGAATTGTTCTTTAAATGGCTCAAGCAG
CACGCTCAAATTAAACACTTTTACGGTACAAGCGAAACCGCAGTAACCAACCAAATTCTATTAGCACTGATGACTTATTGTTCTTTAATGCTGCTTAAAC
TTGAAGTGGAATATCCAAGAGACTTGCTCACCTTGCAAAGACTACTGATTACCTGTCTCTTTGAGAGCTATGAGGAGTTTTTAGAAAAACTCCGACGACG
AAGAAGGAAAGCTGCCAAAAGGATTAACCATGAAAAGATCTACCAAATGACAGAGCATTACATCATCACTGAGGAAGACACAGGATGGTTAAATGACTTG
ATATATGACCCTGTGATTCTGTGAGATAATATGTGTAAAAATGTGGAAAAGGGCTATCTGTTGCCTGGTCTTTCTTTGGACTGAGGGGAGTAAACTCGGA
TGGTTGTATACACCAATTATGATAAATAATTGAAGGAGACCTGAGGCGAATTTTCCCTTGACAGTAACCATCTTAATTTAATGCAACGCTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 414 aa | 180 | 1421 | + | No |
Chemistry : DDE
ORF sequence :
MQDKDTTHSTFMQAFQPLFSKDLWKDIHQQVPDLDRRTQKLKTNQLTLLISNAQLQEYRALRKISTSVLSDNLGQAIGLKSISHSQISRRLKTLPTKVSE
MLFRRTLHKVAQKQGYGKIRQQLGKLYMIDASTISLCLSRYPWAVFRKSKAGVKIHLRLSFDGIALPDEVVITPAKIADRKKLDELIVEDKDALNIFDRG
YVDYELFDDYCEKGIRFVTRLKNNAIMEFTGVERPVEEDGIIEEDVDIILGTGSRKMKHTLREVTIDDTINEPFTILTNDFELSAEELGEIYRYRWQIEL
FFKWLKQHAQIKHFYGTSETAVTNQILLALMTYCSLMLLKLEVEYPRDLLTLQRLLITCLFESYEEFLEKLRRRRRKAAKRINHEKIYQMTEHYIITEED
TGWLNDLIYDPVIL
MLFRRTLHKVAQKQGYGKIRQQLGKLYMIDASTISLCLSRYPWAVFRKSKAGVKIHLRLSFDGIALPDEVVITPAKIADRKKLDELIVEDKDALNIFDRG
YVDYELFDDYCEKGIRFVTRLKNNAIMEFTGVERPVEEDGIIEEDVDIILGTGSRKMKHTLREVTIDDTINEPFTILTNDFELSAEELGEIYRYRWQIEL
FFKWLKQHAQIKHFYGTSETAVTNQILLALMTYCSLMLLKLEVEYPRDLLTLQRLLITCLFESYEEFLEKLRRRRRKAAKRINHEKIYQMTEHYIITEED
TGWLNDLIYDPVIL
Blast result :
Comments
ISDha2 is 59% aa similar to IS4Bsu1.
ISDha2 was found by screening completely sequenced genomes for sequences homologous to the ISPpu8 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-67-D(N3)-102-E(C1).
Other Accession number : NC_007907
ISDha2 was found by screening completely sequenced genomes for sequences homologous to the ISPpu8 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-67-D(N3)-102-E(C1).
Other Accession number : NC_007907
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P. and Richardson,P.(2006)Unpublished
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P. and Richardson,P.(2006)Unpublished