ISMysp2

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000519 ND Mycobacterium sp.
Mycobacterium sp. KMS
DNA section
IS Length : 1095 bp

Ends


IR Length : 25

IRL : ACTGCTTATCCGCTTAAGTGGACCTAAGCTGGTCAGCATGGGTTTCGAGG
IRR : ACTGCTTATCCGCTTAAGTGGACCTGTGTCAGTCAGAACTCGCCATATGT

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCTTTGATCGGAAGCACGAGCGATCCGAAGGCC8

DNA sequence

ACTGCTTATCCGCTTAAGTGGACCTAAGCTGGTCAGCATGGGTTTCGAGGGCGCTCCTGTGGGTGGTGTGGACTATCCGCGGACCTATCAAGAATTCCGC
GCGTGGTTTCCCGACGACGCCTCATGTGCAGCGTATTTGGCCCGTCTGCGCTGGCCAGGCGGCTTTCGATGCCCCTCGTGTGATCACGATCGAGCATGGC
AAACCTCAACCCAGCACTGGAAGTGTGTGAGCTGCGGCCGGAAGACGTCGGTGACCGCGGGGACTATCTTCCATCGGACCCGCACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGGGCGTCAGCCAAGAACCTGCACGACATGCTCGGCCTGGGCTCGTATGAGACCGCGTGGGCC
TGGCTCCACAAGATGCGCCGGGCAATGGTGCGCCCCGACCGCGAGTTGCTCACCGAAGTCGTCGAAGTTGACGAGTCCTTCATCGGCGGCCGCGCCACTG
GCAAGAAAGGCGCCTCCACGAGTAAGGCCCCGGTGATGATTGCGGTGGAAAACATTGGCACGCAAGTAAATCGAAAACTTCGACTTGGCCGAGTGCGTCT
CGGCGTCGCAGACTCACCAGGGTCGAAACAACTCGTCGACTTCGCACGCACGACCGTTGAACCAGGCTCGGTGATCCGCACCGACGGCGCCCGAATGTTC
CGCGTCTTGGCAGGCGAAGGGTTCAAGCATGAGTACATCTCCGGCTACAGCTCACCGGAACCTGGGCACGTCACCCTACCGGGACCACACCGGGTGGCCT
CGCTACTGAAACGATGGAATGCCGGCACTCACCACTACCGAGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAGTTCACCTTCCGGTTCAACCGACG
TCGGTCGACCGCCCGCGGCATGCTCTTCTACCGCCTGCTCCAGCAAAGCGTCAATACAGACCCGCATCCACTGAGCGAGCTAGTCAGCCGCACTTCAGAG
CCGTTCTCGCCCAACGACAATCCCACCGAATTCATCACCAGCGACACATATGGCGAGTTCTGACTGACACAGGTCCACTTAAGCGGATAAGCAGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1005 bp334 aa591063+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGGVDYPRTYQEFRAWFPDDASCAAYLARLRWPGGFRCPSCDHDRAWQTSTQHWKCVSCGRKTSVTAGTIFHRTRTPLSTWFAAIWLVTSQKNGASAKNL
HDMLGLGSYETAWAWLHKMRRAMVRPDRELLTEVVEVDESFIGGRATGKKGASTSKAPVMIAVENIGTQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRVLAGEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSTARGMLFYRLLQQSVNT
DPHPLSELVSRTSEPFSPNDNPTEFITSDTYGEF

 

Blast result :
Comments
ISMysp2 is 96% aa similar to ISMva1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. US DOE Joint Genome Institute (JGI-PGF)(20006) Direct submission Genbank.