ISFal1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008278 ND Frankia alni
Frankia alni ACN14a
DNA section
IS Length : 1736 bp

Ends


IR Length : 34/38

IRL : GGATCTGTCCCTGATCTTGTGATCGGACTGACCCCGGGGCAGCGCGCTGG
IRR : GGATCTGTCCCTGATCTTGTGATCGAAGTGGACCCGGGCGCTGTCAGGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCAGTTCAGTCATGACTGAGATCCAGTTTTCAGGAG0

DNA sequence

GGATCTGTCCCTGATCTTGTGATCGGACTGACCCCGGGGCAGCGCGCTGGCCACGATCGACCTTCTGTGATCATGTGTCGGGTGCCTCTCTGACCTTGGG
GTTCTCCTTCCGCATCTGGCGGGTCTCGTTGTCGATCGGGTGGACCGGTCTGGTGATCGGCTGCGGTTGCGGGCTCGTGTTCGAGGAGCTGCTGGTGGGT
GCCCTGGGTGTGGGGTGGTCTCGGAGCGGGTCCACGGGCGGTATCGCCGCCGGCTGGTCGATGCAGCGATCGCGGGTGCTCAGGTGGAGATCGATCTGCT
GGTTCGACGGTTCCGCTGCCTGACAGCGGACTGTGGGCGGGTGACGTTCACGGAGCAGGTCGTGGGTCTGACGAGTCCGCGTGCCCGGTTCACCCCGCTC
GCCGACCGGATGATCGAGGCGATCGGGTTGGCGTTGGCGGGCAGAGCCGGAGCGCGCCTCGCCGACAGGATGGGGCTTCCCGCTGGTCGCAACACGCTGC
TACGCCGAGTCCGGGCCCTGTCCGACCCGCAGATCGGGGTGGTGACGGTCCTCGGGGTGGATGACTTCGCGCTGCGCCGGGGTCGGGTCTACGGAACGGT
CCTGATCGATCTCGACCGCCACCGGCCGGTGGACCTGCTCCCCGACCGGGAAGCCGGAACGTTCGCCGGCTGGCTGGGCGAGCATCCCGGCACACAGGTG
ATCTGCCGGGACCGCGCCGGTGCCTACGCCGACGGCGCTCGCACCGGCGCCCCGGACGCGGTGCAGGTAGCGGACCGCTTCCACCTGTGGAGCAACCTCG
CCGGATACGTCGAGACGACGGTCGCCCGGCACCGTTCCTGCCTGGCACAACCACCGGCCACCGAAGGTGAGATCGCGGACGAACCGCAGGCGGACCTGGA
CAGCGCGGTGGCCGCGGCACGGGACGCGCAGTTCGAGCAGCGGGCGTTCGTGCGGCACGCCCGCGAGCGGTACACGGCCATCCAGGAACTGAAAGCCGCG
GGCGTGGGCATCAAACCGATCGCCGCCCGACTCGGCCTGGCCCGCGGAACGGTCCGCAAGTACTACCGCGCGACCAGCGTCGAGGACGTCCTGGCCAAGA
CCCGCGACGGCCGTGGTTCGATCCTGCGGCCTTGGGAGCTCTACCTCACCGAGCGGGTCAACGCCGGGATCACCAACGGCAGCCAGCTGTTCAGGGAGAT
CCGCGGCCAGGGCTATTCGGGGAGCAAGGCCGTGGTCCTGGCCTACCTGCGCCCGCTGCGTGCCAGCGGCGCCAACGCCGCGCCCGCGGCACGACCGGCA
CCGAAGGTCCGCACCGTCACCCGGTGGATCCTCACCCACCCCGAGCACCTCAATGAGCAGGAGACCCTGGCGCTGAAGACGATCCTCACCCGCTGCCAGG
ACCTCCAGAAAACCGCCGGTCATGTCACCGCGTTCGCGCAGATGCTCACCGGTCGTCACGGCGACCGGCTCAACGACTGGATCGCCGCCGTCGACGCCGA
CGACCTGCCCGAACTGCACCGCTTCACCCGCGGCCTCCTGCGTGACCACGACGCGGTCCTCAACGGGCTGACCCTGCCGCACAGCTCCGGACAGGTCGAG
GGAGCCGTGAACCGCATCAAAATGATCGAACGGCAGATGTACGGCAGGGCGAACTTCGACCTGCTCCGCAAACGAGTGCTCCTCGCGACCTGACAGCGCC
CGGGTCCACTTCGATCACAAGATCAGGGACAGATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1410 bp469 aa2841693+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEIDLLVRRFRCLTADCGRVTFTEQVVGLTSPRARFTPLADRMIEAIGLALAGRAGARLADRMGLPAGRNTLLRRVRALSDPQIGVVTVLGVDDFALRRG
RVYGTVLIDLDRHRPVDLLPDREAGTFAGWLGEHPGTQVICRDRAGAYADGARTGAPDAVQVADRFHLWSNLAGYVETTVARHRSCLAQPPATEGEIADE
PQADLDSAVAAARDAQFEQRAFVRHARERYTAIQELKAAGVGIKPIAARLGLARGTVRKYYRATSVEDVLAKTRDGRGSILRPWELYLTERVNAGITNGS
QLFREIRGQGYSGSKAVVLAYLRPLRASGANAAPAARPAPKVRTVTRWILTHPEHLNEQETLALKTILTRCQDLQKTAGHVTAFAQMLTGRHGDRLNDWI
AAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEGAVNRIKMIERQMYGRANFDLLRKRVLLAT

 

Blast result :
Comments
ISFal1 is 52% aa similar to IS469. There is only one copy in Frankia alni ACN14a.
References
1] Normand, P. (2006) Unpublished