ISFal1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008278 | ND | Frankia alni | Frankia alni ACN14a |
DNA section
IS Length : 1736 bp
Ends
IR Length : 34/38
IRL : GGATCTGTCCCTGATCTTGTGATCGGACTGACCCCGGGGCAGCGCGCTGG
IRR : GGATCTGTCCCTGATCTTGTGATCGAAGTGGACCCGGGCGCTGTCAGGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCAGTTCAGTCATGACTG | AGATCCAGTTTTCAGGAG | 0 |
DNA sequence
GGATCTGTCCCTGATCTTGTGATCGGACTGACCCCGGGGCAGCGCGCTGGCCACGATCGACCTTCTGTGATCATGTGTCGGGTGCCTCTCTGACCTTGGG
GTTCTCCTTCCGCATCTGGCGGGTCTCGTTGTCGATCGGGTGGACCGGTCTGGTGATCGGCTGCGGTTGCGGGCTCGTGTTCGAGGAGCTGCTGGTGGGT
GCCCTGGGTGTGGGGTGGTCTCGGAGCGGGTCCACGGGCGGTATCGCCGCCGGCTGGTCGATGCAGCGATCGCGGGTGCTCAGGTGGAGATCGATCTGCT
GGTTCGACGGTTCCGCTGCCTGACAGCGGACTGTGGGCGGGTGACGTTCACGGAGCAGGTCGTGGGTCTGACGAGTCCGCGTGCCCGGTTCACCCCGCTC
GCCGACCGGATGATCGAGGCGATCGGGTTGGCGTTGGCGGGCAGAGCCGGAGCGCGCCTCGCCGACAGGATGGGGCTTCCCGCTGGTCGCAACACGCTGC
TACGCCGAGTCCGGGCCCTGTCCGACCCGCAGATCGGGGTGGTGACGGTCCTCGGGGTGGATGACTTCGCGCTGCGCCGGGGTCGGGTCTACGGAACGGT
CCTGATCGATCTCGACCGCCACCGGCCGGTGGACCTGCTCCCCGACCGGGAAGCCGGAACGTTCGCCGGCTGGCTGGGCGAGCATCCCGGCACACAGGTG
ATCTGCCGGGACCGCGCCGGTGCCTACGCCGACGGCGCTCGCACCGGCGCCCCGGACGCGGTGCAGGTAGCGGACCGCTTCCACCTGTGGAGCAACCTCG
CCGGATACGTCGAGACGACGGTCGCCCGGCACCGTTCCTGCCTGGCACAACCACCGGCCACCGAAGGTGAGATCGCGGACGAACCGCAGGCGGACCTGGA
CAGCGCGGTGGCCGCGGCACGGGACGCGCAGTTCGAGCAGCGGGCGTTCGTGCGGCACGCCCGCGAGCGGTACACGGCCATCCAGGAACTGAAAGCCGCG
GGCGTGGGCATCAAACCGATCGCCGCCCGACTCGGCCTGGCCCGCGGAACGGTCCGCAAGTACTACCGCGCGACCAGCGTCGAGGACGTCCTGGCCAAGA
CCCGCGACGGCCGTGGTTCGATCCTGCGGCCTTGGGAGCTCTACCTCACCGAGCGGGTCAACGCCGGGATCACCAACGGCAGCCAGCTGTTCAGGGAGAT
CCGCGGCCAGGGCTATTCGGGGAGCAAGGCCGTGGTCCTGGCCTACCTGCGCCCGCTGCGTGCCAGCGGCGCCAACGCCGCGCCCGCGGCACGACCGGCA
CCGAAGGTCCGCACCGTCACCCGGTGGATCCTCACCCACCCCGAGCACCTCAATGAGCAGGAGACCCTGGCGCTGAAGACGATCCTCACCCGCTGCCAGG
ACCTCCAGAAAACCGCCGGTCATGTCACCGCGTTCGCGCAGATGCTCACCGGTCGTCACGGCGACCGGCTCAACGACTGGATCGCCGCCGTCGACGCCGA
CGACCTGCCCGAACTGCACCGCTTCACCCGCGGCCTCCTGCGTGACCACGACGCGGTCCTCAACGGGCTGACCCTGCCGCACAGCTCCGGACAGGTCGAG
GGAGCCGTGAACCGCATCAAAATGATCGAACGGCAGATGTACGGCAGGGCGAACTTCGACCTGCTCCGCAAACGAGTGCTCCTCGCGACCTGACAGCGCC
CGGGTCCACTTCGATCACAAGATCAGGGACAGATCC
GTTCTCCTTCCGCATCTGGCGGGTCTCGTTGTCGATCGGGTGGACCGGTCTGGTGATCGGCTGCGGTTGCGGGCTCGTGTTCGAGGAGCTGCTGGTGGGT
GCCCTGGGTGTGGGGTGGTCTCGGAGCGGGTCCACGGGCGGTATCGCCGCCGGCTGGTCGATGCAGCGATCGCGGGTGCTCAGGTGGAGATCGATCTGCT
GGTTCGACGGTTCCGCTGCCTGACAGCGGACTGTGGGCGGGTGACGTTCACGGAGCAGGTCGTGGGTCTGACGAGTCCGCGTGCCCGGTTCACCCCGCTC
GCCGACCGGATGATCGAGGCGATCGGGTTGGCGTTGGCGGGCAGAGCCGGAGCGCGCCTCGCCGACAGGATGGGGCTTCCCGCTGGTCGCAACACGCTGC
TACGCCGAGTCCGGGCCCTGTCCGACCCGCAGATCGGGGTGGTGACGGTCCTCGGGGTGGATGACTTCGCGCTGCGCCGGGGTCGGGTCTACGGAACGGT
CCTGATCGATCTCGACCGCCACCGGCCGGTGGACCTGCTCCCCGACCGGGAAGCCGGAACGTTCGCCGGCTGGCTGGGCGAGCATCCCGGCACACAGGTG
ATCTGCCGGGACCGCGCCGGTGCCTACGCCGACGGCGCTCGCACCGGCGCCCCGGACGCGGTGCAGGTAGCGGACCGCTTCCACCTGTGGAGCAACCTCG
CCGGATACGTCGAGACGACGGTCGCCCGGCACCGTTCCTGCCTGGCACAACCACCGGCCACCGAAGGTGAGATCGCGGACGAACCGCAGGCGGACCTGGA
CAGCGCGGTGGCCGCGGCACGGGACGCGCAGTTCGAGCAGCGGGCGTTCGTGCGGCACGCCCGCGAGCGGTACACGGCCATCCAGGAACTGAAAGCCGCG
GGCGTGGGCATCAAACCGATCGCCGCCCGACTCGGCCTGGCCCGCGGAACGGTCCGCAAGTACTACCGCGCGACCAGCGTCGAGGACGTCCTGGCCAAGA
CCCGCGACGGCCGTGGTTCGATCCTGCGGCCTTGGGAGCTCTACCTCACCGAGCGGGTCAACGCCGGGATCACCAACGGCAGCCAGCTGTTCAGGGAGAT
CCGCGGCCAGGGCTATTCGGGGAGCAAGGCCGTGGTCCTGGCCTACCTGCGCCCGCTGCGTGCCAGCGGCGCCAACGCCGCGCCCGCGGCACGACCGGCA
CCGAAGGTCCGCACCGTCACCCGGTGGATCCTCACCCACCCCGAGCACCTCAATGAGCAGGAGACCCTGGCGCTGAAGACGATCCTCACCCGCTGCCAGG
ACCTCCAGAAAACCGCCGGTCATGTCACCGCGTTCGCGCAGATGCTCACCGGTCGTCACGGCGACCGGCTCAACGACTGGATCGCCGCCGTCGACGCCGA
CGACCTGCCCGAACTGCACCGCTTCACCCGCGGCCTCCTGCGTGACCACGACGCGGTCCTCAACGGGCTGACCCTGCCGCACAGCTCCGGACAGGTCGAG
GGAGCCGTGAACCGCATCAAAATGATCGAACGGCAGATGTACGGCAGGGCGAACTTCGACCTGCTCCGCAAACGAGTGCTCCTCGCGACCTGACAGCGCC
CGGGTCCACTTCGATCACAAGATCAGGGACAGATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1410 bp | 469 aa | 284 | 1693 | + | No |
Chemistry : Unknow
ORF sequence :
MEIDLLVRRFRCLTADCGRVTFTEQVVGLTSPRARFTPLADRMIEAIGLALAGRAGARLADRMGLPAGRNTLLRRVRALSDPQIGVVTVLGVDDFALRRG
RVYGTVLIDLDRHRPVDLLPDREAGTFAGWLGEHPGTQVICRDRAGAYADGARTGAPDAVQVADRFHLWSNLAGYVETTVARHRSCLAQPPATEGEIADE
PQADLDSAVAAARDAQFEQRAFVRHARERYTAIQELKAAGVGIKPIAARLGLARGTVRKYYRATSVEDVLAKTRDGRGSILRPWELYLTERVNAGITNGS
QLFREIRGQGYSGSKAVVLAYLRPLRASGANAAPAARPAPKVRTVTRWILTHPEHLNEQETLALKTILTRCQDLQKTAGHVTAFAQMLTGRHGDRLNDWI
AAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEGAVNRIKMIERQMYGRANFDLLRKRVLLAT
RVYGTVLIDLDRHRPVDLLPDREAGTFAGWLGEHPGTQVICRDRAGAYADGARTGAPDAVQVADRFHLWSNLAGYVETTVARHRSCLAQPPATEGEIADE
PQADLDSAVAAARDAQFEQRAFVRHARERYTAIQELKAAGVGIKPIAARLGLARGTVRKYYRATSVEDVLAKTRDGRGSILRPWELYLTERVNAGITNGS
QLFREIRGQGYSGSKAVVLAYLRPLRASGANAAPAARPAPKVRTVTRWILTHPEHLNEQETLALKTILTRCQDLQKTAGHVTAFAQMLTGRHGDRLNDWI
AAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEGAVNRIKMIERQMYGRANFDLLRKRVLLAT
Blast result :
Comments
ISFal1 is 52% aa similar to IS469. There is only one copy in Frankia alni ACN14a.
References
1] Normand, P. (2006) Unpublished