ISSod8
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004349 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 826 bp
Ends
IR Length : 15/16
IRL : GGTTCTGTCGCAAAGTTGACGATAAGAGTTTAACAGTGAATGATCTTTCA
IRR : GGTTCTGTCGCAAACTGAGATCTTGCTGCTCCAAATTGAAGGGGCAGTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGTCGCAAAGTTGACGATAAGAGTTTAACAGTGAATGATCTTTCAATATGAATTTGGAGCATCCACTGCATGACCCTCAATTTTTCTGGCAGACA
TTTTCCATCTGATATCATCATGCAAGCGCTGCGATATTACCTTGCTTATAAACTTAGTTACCGTGAAATTGAGGAAATGTTCGCAGAGCGAAACATTCAT
TTTGACCACTCAACACTGAACCGCTGGGTTATCAAATATGCACCTCTGCTCGAAGCCATATTCAGGAAGAAAAAGCGTCCAATATCTGGCTCGTGGCGAA
TGGATGAAACTTACATAAAAATGAAGGGGCAGTGGGCTTACTATTATCGTGCAGTGGATAAATTCAGCGCGGTGATTGATTTTTACTTGAGTGAAACCCG
TGATGAGAAGGCCGCACACGCTTTTTTCACTAAAGCTATCAATCAACATGGCTTACCTGAGAAGGTGGTTATTGATAAAAGTGGCGCCAATGCTGCAGCG
TTAGATACTGTTAACATTCGGCTGTGGCTATCAGGATGTATGCTCTTTATGATTGAGGTGCTTACCGTTAAATATTTGAATAATATTGTCGAGCAAAGCC
ACCGAAAAGTGAAGGGTAAAATTAATGCCTAGGCTGGAAGTCTTGGGAAGGGGCTGAGTCAACACTGGCTGGCGTTGAGCTTTGGTCCATGATTAAGTTG
GGGCAAATGGACACGGCTCAAATGATGACCCCGTGGGAACAATTTTATTCTTTAACGGCCTAGTTGTATCTGAAGGATACTGCCCCTTCAATTTGGAGCA
GCAAGATCTCAGTTTGCGACAGAACC
TTTTCCATCTGATATCATCATGCAAGCGCTGCGATATTACCTTGCTTATAAACTTAGTTACCGTGAAATTGAGGAAATGTTCGCAGAGCGAAACATTCAT
TTTGACCACTCAACACTGAACCGCTGGGTTATCAAATATGCACCTCTGCTCGAAGCCATATTCAGGAAGAAAAAGCGTCCAATATCTGGCTCGTGGCGAA
TGGATGAAACTTACATAAAAATGAAGGGGCAGTGGGCTTACTATTATCGTGCAGTGGATAAATTCAGCGCGGTGATTGATTTTTACTTGAGTGAAACCCG
TGATGAGAAGGCCGCACACGCTTTTTTCACTAAAGCTATCAATCAACATGGCTTACCTGAGAAGGTGGTTATTGATAAAAGTGGCGCCAATGCTGCAGCG
TTAGATACTGTTAACATTCGGCTGTGGCTATCAGGATGTATGCTCTTTATGATTGAGGTGCTTACCGTTAAATATTTGAATAATATTGTCGAGCAAAGCC
ACCGAAAAGTGAAGGGTAAAATTAATGCCTAGGCTGGAAGTCTTGGGAAGGGGCTGAGTCAACACTGGCTGGCGTTGAGCTTTGGTCCATGATTAAGTTG
GGGCAAATGGACACGGCTCAAATGATGACCCCGTGGGAACAATTTTATTCTTTAACGGCCTAGTTGTATCTGAAGGATACTGCCCCTTCAATTTGGAGCA
GCAAGATCTCAGTTTGCGACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
558 bp | 185 aa | 75 | 632 | + | No |
Chemistry : DDE
ORF sequence :
MPLNFSGRHFPSDIIMQALRYYLAYKLSYREIEEMFAERNIHFDHSTLNRWVIKYAPLLEAIFRKKKRPISGSWRMDETYIKMKGQWAYYYRAVDKFSAV
IDFYLSETRDEKAAHAFFTKAINQHGLPEKVVIDKSGANAAALDTVNIRLWLSGCMLFMIEVLTVKYLNNIVEQSHRKVKGKINA
IDFYLSETRDEKAAHAFFTKAINQHGLPEKVVIDKSGANAAALDTVNIRLWLSGCMLFMIEVLTVKYLNNIVEQSHRKVKGKINA
Blast result :
Comments
ISSod8 is 70% aa similar to IS2020.
There are 0 copies of ISSod8 in the chromosome, and 3 intact copies and 2 degenerate copies in the plasmid of this strain.
There are 0 copies of ISSod8 in the chromosome, and 3 intact copies and 2 degenerate copies in the plasmid of this strain.
References
1] DeBoy R. (2005) Direct submission.
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123