ISSod3
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004347 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 1338 bp
Ends
IR Length : 23/38
IRL : CTGAAGAATCCCCTGATGATTTTCAGATAAATCATTAAATTAGAGTGAAC
IRR : CTGTAGGATCCCCTCATAATTCATAGCCCCAACAACCATGAGTTAATGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CTGAAGAATCCCCTGATGATTTTCAGATAAATCATTAAATTAGAGTGAACTTGCACCTTGAAGTGTGATCAGATGGAAGTGCGAACAAACATCAATCACA
GGGCATCAAGGTGCAAGTGTTAACTATCTTACATCAATCTCTCTATCAACATTGTCCAGAAATCCATCAAAAGCGACTGAATACACTCATGGTCGCCTGC
AAAGCCCTCATCAACGCGGATTGTCTCACCCTCACGCATTTAGGGCGGCACATTGATGGCACCAGCACTCATACTAAACACTCAATAAAACGCATGGATA
GATTATTGGGCAACCCGCACCTTCACCATGAAAGACTGGCTGTTTATCAGTGGCATGCAAAGTGGCTGCTAACAGCACATACGATGCCGACCATACTGGT
GGATTGGTCTGATATGCGTGAAGGTCGTGAACTGATTGCACTACGCGCCTCTATTGCGATTAAGGGCCGCTCTATCACGCTCTACGAGCGAACATTTCCG
TTAGTACTACAAGGCACACAAACTGCCCATAATCAGTTTCTGAATGAACTCCATAAAGTGTTACCTGACAATATTACCCCGCTGATAGTCACTGACGCGG
GCTTCCGTAATCCATGGTTTCGAAAAGTCGAGCAGCTCGGTTGGTATTGGCTGGGTCGTGTCAGAGGATTAAGTGTCTATCGGCTGCACCCCTTCGGTCG
CCAATTTTCGCTAAAAGCGCTTTATCCCAAAGCCAGTCGTCGCGCAAAACATGTTGGGCGAGTGGCGTTATCGGTAAAGAAACCCTTGTTATGCGAGATG
GTATTGTTCAGGGCTCCAAGTAAAGGCAGAAAAGGTCAGCGAAGTACGACAACAGACTGTCACCATACGGCGCAATGGACGTATGAACTGACCGCCAAAG
AGCCTTGGGCACTGGTGACCAACTTGACCATAGAAGCCATGTCGCCTCAAAAACTGGTTAATATTTACCAAAAACGGATGCAAATAGAAGAAACCTTTAG
AGATTTAAAAAGCCCCGCTTATGGCTTTGGTTTACGTCATAGCAGAACACGTTATGCGGCGAGGATGGACATACTGCTATTGATAGCATTATTGGTACAA
CTGGCATTTTGGTGGGTAGGATTATACGGAGAAACACAGCAATTACAGCGGCACTTCCAAGCCAACACGGTAAAGAAAAGGAATGTGCTATCAACAATCA
GGATGGGCAAAGAACTGCTGCGGCGACGGCATGACTACCCCATATCAGCAGATGATTTGCTTTGTGCTGCGAAGAAACTAGCCCAACTCTCATTAACTCA
TGGTTGTTGGGGCTATGAATTATGAGGGGATCCTACAG
GGGCATCAAGGTGCAAGTGTTAACTATCTTACATCAATCTCTCTATCAACATTGTCCAGAAATCCATCAAAAGCGACTGAATACACTCATGGTCGCCTGC
AAAGCCCTCATCAACGCGGATTGTCTCACCCTCACGCATTTAGGGCGGCACATTGATGGCACCAGCACTCATACTAAACACTCAATAAAACGCATGGATA
GATTATTGGGCAACCCGCACCTTCACCATGAAAGACTGGCTGTTTATCAGTGGCATGCAAAGTGGCTGCTAACAGCACATACGATGCCGACCATACTGGT
GGATTGGTCTGATATGCGTGAAGGTCGTGAACTGATTGCACTACGCGCCTCTATTGCGATTAAGGGCCGCTCTATCACGCTCTACGAGCGAACATTTCCG
TTAGTACTACAAGGCACACAAACTGCCCATAATCAGTTTCTGAATGAACTCCATAAAGTGTTACCTGACAATATTACCCCGCTGATAGTCACTGACGCGG
GCTTCCGTAATCCATGGTTTCGAAAAGTCGAGCAGCTCGGTTGGTATTGGCTGGGTCGTGTCAGAGGATTAAGTGTCTATCGGCTGCACCCCTTCGGTCG
CCAATTTTCGCTAAAAGCGCTTTATCCCAAAGCCAGTCGTCGCGCAAAACATGTTGGGCGAGTGGCGTTATCGGTAAAGAAACCCTTGTTATGCGAGATG
GTATTGTTCAGGGCTCCAAGTAAAGGCAGAAAAGGTCAGCGAAGTACGACAACAGACTGTCACCATACGGCGCAATGGACGTATGAACTGACCGCCAAAG
AGCCTTGGGCACTGGTGACCAACTTGACCATAGAAGCCATGTCGCCTCAAAAACTGGTTAATATTTACCAAAAACGGATGCAAATAGAAGAAACCTTTAG
AGATTTAAAAAGCCCCGCTTATGGCTTTGGTTTACGTCATAGCAGAACACGTTATGCGGCGAGGATGGACATACTGCTATTGATAGCATTATTGGTACAA
CTGGCATTTTGGTGGGTAGGATTATACGGAGAAACACAGCAATTACAGCGGCACTTCCAAGCCAACACGGTAAAGAAAAGGAATGTGCTATCAACAATCA
GGATGGGCAAAGAACTGCTGCGGCGACGGCATGACTACCCCATATCAGCAGATGATTTGCTTTGTGCTGCGAAGAAACTAGCCCAACTCTCATTAACTCA
TGGTTGTTGGGGCTATGAATTATGAGGGGATCCTACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1215 bp | 404 aa | 111 | 1325 | + | No |
Chemistry : DDE
ORF sequence :
MQVLTILHQSLYQHCPEIHQKRLNTLMVACKALINADCLTLTHLGRHIDGTSTHTKHSIKRMDRLLGNPHLHHERLAVYQWHAKWLLTAHTMPTILVDWS
DMREGRELIALRASIAIKGRSITLYERTFPLVLQGTQTAHNQFLNELHKVLPDNITPLIVTDAGFRNPWFRKVEQLGWYWLGRVRGLSVYRLHPFGRQFS
LKALYPKASRRAKHVGRVALSVKKPLLCEMVLFRAPSKGRKGQRSTTTDCHHTAQWTYELTAKEPWALVTNLTIEAMSPQKLVNIYQKRMQIEETFRDLK
SPAYGFGLHHSRTRYAARMDILLLIALLVQLAFWWVGLYGETQQLQRHFQANTVKKRNVLSTIRMGKELLRRRHDYPISADDLLCAAKKLAQLSLTHGCW
GYEL
DMREGRELIALRASIAIKGRSITLYERTFPLVLQGTQTAHNQFLNELHKVLPDNITPLIVTDAGFRNPWFRKVEQLGWYWLGRVRGLSVYRLHPFGRQFS
LKALYPKASRRAKHVGRVALSVKKPLLCEMVLFRAPSKGRKGQRSTTTDCHHTAQWTYELTAKEPWALVTNLTIEAMSPQKLVNIYQKRMQIEETFRDLK
SPAYGFGLHHSRTRYAARMDILLLIALLVQLAFWWVGLYGETQQLQRHFQANTVKKRNVLSTIRMGKELLRRRHDYPISADDLLCAAKKLAQLSLTHGCW
GYEL
Blast result :
Comments
ISSod3 is 72% aa similar to IS10R.
There are 16 copies of ISSod3 in the chromosome and 3 copies in the plasmid of this strain.
There are 16 copies of ISSod3 in the chromosome and 3 copies in the plasmid of this strain.
References
1] DeBoy R. (2005) Direct submission.
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123