ISMyma5

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Mycobacterium marinum
Mycobacterium marinum M
DNA section
IS Length : 1838 bp

Ends


IR Length : 37/50

IRL : TGTGCGATTCCGGTTCATGCTTGACGTTTGGGTTCCGGTTGCTGTTTGAC
IRR : TGTCAAGTTTCGGTACCCGCTTGACGGATGAGTTCCGGTAGGTGCTTTAC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGTGCGATTCCGGTTCATGCTTGACGTTTGGGTTCCGGTTGCTGTTTGACGGTTTGGGGACGCGGTTTCGGTAGGTGTGCGACAGCAGTTCCGGTAGGTG
CTTTACACCCGGCGTGTTGCCGCTGGTGGCGGTGAGTTCTTTCGTGGTCGTGGGTGGACTGCGGAAGGGGCCGGCATGTTGCAGGAGCTGCGGATGTCCG
AAATGCGGTATCGGGCGGTGCTGGAGGTGTTGGACGGAGCGCCGGTGACCGCGGTTGCCCGTCGGTTCGGGGTGTCGCGCCAGACGGTGCATGCCTGGTT
GCGCCGGTACGCCGAGGAGGGTGCGGCGCTGAATTTGGAGGACCGGTCTTCGCGTCCACATCGGTGTCCGCATCAGATGCCAGTCGAGGTGGAGGCGCGG
GTGTTGACGTTGCGTGATGCCCATCCGCGGTGGGGCCCGACCCGCATCGTCTACGAGCTGCAGCGCGACGGTGTGCCGGTGGTGCCGGGTCGTTCCAGTG
TGTATCGGGCTTTGGTGCGCAACGGTCGTATCGATCCGGCCAAGCGTCGCCGGCGGCGCAGCGATTACAAGCGCTGGGAGCGGGGCCGGCCGATGGAGTT
GTGGCAGATGGACGTGGTCGGCGGGCTGCATCTGCGCGATGGCATCGAGGTCAAGGTGGTGACCGGCATCGACGACAATTCCCGGTTCGTGGTGTCGGCG
AAGGTGGTCGCGCGGGCGACGGCACGGCCGGTCTGTGCGGCGCTGTTGGAGGCGCTGCGCCGCCACGGGGTGCCCGAGCAGATCCTGACTGACAACGGCA
AGGTGTTCACCGGCCGGTTCGGCCCGGGTGGCTCCAGTGCGGAGGTGCTCTTTGACCGGGTGTGTGTGGAGAACGGCATCGGGCATTTGTTGACCGCTCC
GCGCTCACCCACGACGACGGGAAAGGTTGAGCGCCTTCACAAGACGATGCGGGCGGAGATTTTCGCCGAGGTGGACGGGGTGTTCGACGCCATCGCCGAG
TTGCAGGCCGCGATAGACCGGTGGGTGCAGTACTACAACACCGCGCGCCCGCATCAATCGTTGGGGATGGTGGCGCCGGCGGCCCGGTTCGCGTTGGCGG
CCGGTCCGGATCTCAGCGTCGTCGAGCCGGTCGCGGCAGTCCCAGCCGAGGGGCAGCACCCGGGGGCGCTGGTGGATCTGCGCGATGCCGGCGTGCGCCG
CTGGGTGAATCGGCATGGGTCGATCAGTGTGGCGGGTTTTCGGTACCGGGTACCAATCGTGCTGGCCGGAGAGCCGGTGTCGGTGGTGGTGGCCGACAAC
CTGGTGTCGATCTATCACCATGACGTGCTGGTGGCCTCGCACGTGCAGCACCGCAAGACCGACAACACGACGGGAGTGGTCCGGCAGGGCCGGCGGACGG
CGCGGCCGGTCACCAGCGGGATCGTGGTGACCCGGGTGGTCGACAGCAACGGTGATGTCTCGTTCGCGGGGACGATGTATCGGGCCGGAAGGGTGTGGCG
GGGAAAGCAAGTCGAGGTGTCGATCGTGGCGGAGTCAGTGCAGATCGCGTGCGCGGGAGCGATCGTGCGGACCCATGCCATCCGCCATGACCGGGCCAAG
GAACACGGCGCCTTCGCCACCCCGCATGGTCGTCCCCGCAAGCCGCGCCAGGATGCGCCGGAGGGTCCCGGGGTCAAGGCCACGCCGCTGCGCGGTCGGC
CCGAGGGTCGAGCCTTGACCCCGGCCCCTTGACCGGCGCCCACCGCACCGACGCGGGAAACGCCCTTAACCACCAAGGCCCACGCCCTGTAAAGCACCTA
CCGGAACTCATCCGTCAAGCGGGTACCGAAACTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1557 bp518 aa1761732+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLQELRMSEMRYRAVLEVLDGAPVTAVARRFGVSRQTVHAWLRRYAEEGAALNLEDRSSRPHRCPHQMPVEVEARVLTLRDAHPRWGPTRIVYELQRDGV
PVVPGRSSVYRALVRNGRIDPAKRRRRRSDYKRWERGRPMELWQMDVVGGLHLRDGIEVKVVTGIDDNSRFVVSAKVVARATARPVCAALLEALRRHGVP
EQILTDNGKVFTGRFGPGGSSAEVLFDRVCVENGIGHLLTAPRSPTTTGKVERLHKTMRAEIFAEVDGVFDAIAELQAAIDRWVQYYNTARPHQSLGMVA
PAARFALAAGPDLSVVEPVAAVPAEGQHPGALVDLRDAGVRRWVNRHGSISVAGFRYRVPIVLAGEPVSVVVADNLVSIYHHDVLVASHVQHRKTDNTTG
VVRQGRRTARPVTSGIVVTRVVDSNGDVSFAGTMYRAGRVWRGKQVEVSIVAESVQIACAGAIVRTHAIRHDRAKEHGAFATPHGRPRKPRQDAPEGPGV
KATPLRGRPEGRALTPAP

 

Blast result :
Comments
ISMyma5 is 67% aa similar to ISMav2.
References
1] Stinear T. (2006) Direct submission.