ISAcr1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAOO01000017.1 ND Acidiphilium cryptum
Acidiphilium cryptum JF-5
DNA section
IS Length : 1080 bp

Ends


IR Length : 32/39

IRL : CTTGCCTATCCGGTTGACTCCCATACCTACTAGATCTAGTGTTGGGCATG
IRR : CTTGCCTATCCGGTTGTTACCCACACCCACTAAATGTAGGGTGTGTCCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TACGCTGACCGAATCAGCGACAGCCAAT8

DNA sequence

CTTGCCTATCCGGTTGACTCCCATACCTACTAGATCTAGTGTTGGGCATGGATGTCCTGGCCCGTGAAGACCTGCCGTTCCCGCAGTCTCTGCCGGAATT
CCAGCGTATTTTCCCGAACGACGCGGCCTGTGCCGCCTATCTCGAAAGCGCCCGCTGGAATGGAGGGTTCGCCTGCCCAAGGTGCGGCGTCGTTGGCGAG
CCGTTCCGTTTCGAGGCGCGCCCGGGCGTTCTGCGCTGCCGGGCCTGTCGCAAAGACGTAAGCCTGATGGCTGGGACCGTTATGGAACGCAGTCACACGC
CGCTGTCGACTTGGTTCTGGGCGGCTTACTTGATCGCCAGCCAGACGCCCGGAATGTCGGCCGTCCAATTTCAGCGGCAACTCGGCCTGTCGCGCTACGA
GACCGCCTTCGGCATCCTTCATAAGCTGCGCGCCGGGATGGTGCGCCCCGAGCGCGACAAGATTGGCGACACGCCGCAAGAACACGTCGAAGTGGATGAA
ACGTGGGTTGGAGGACGAACCCGAGGCGATGGACGGGGTGTCCATCACAAGGTTCTCGTCGCCTGTGCCGTGGAGGTGCGCCACCGGAAACCGGGAACCA
AGCTCGACAATCGGAAAGACGGTCGCTACGCGGGACGCGTTCGTCTCGCTGTTGTCCCCGACCGTAGCGCCAATTCGCTCTGCGGATTCGTCGAAAACGC
CGTTGCTCCCGGATCGCTGATCGTTACCGACGACTGGAGCGGCTATGCCGGTCTCGGAAGGCGCGGGTTCGACCACCATGCAATCGCCGAATGCGGCGAC
CCGGAGGTGGCAGAAGAATTCCTGCCGATCGTCCACTTGGTCTTTACCAACCTGAAGACCTGGATCAACGGCATCCATCACGGGGTCAGCGCCAAACATC
TACAAGCCTACCTCAATGAATTCACGTTTCGGTTCAACCGGCGCCTCTATCCCTTCAACGCGTTCCGCTCGCTGCTCGGAATCGCGGGTAGGGCAGCCGC
ACCAACCTTTGACGAGCTTTATTCCGGGGAATGGACACACCCTACATTTAGTGGGTGTGGGTAACAACCGGATAGGCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa481064+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVLAREDLPFPQSLPEFQRIFPNDAACAAYLESARWNGGFACPRCGVVGEPFRFEARPGVLRCRACRKDVSLMAGTVMERSHTPLSTWFWAAYLIASQT
PGMSAVQFQRQLGLSRYETAFGILHKLRAGMVRPERDKIGDTPQEHVEVDETWVGGRTRGDGRGVHHKVLVACAVEVRHRKPGTKLDNRKDGRYAGRVRL
AVVPDRSANSLCGFVENAVAPGSLIVTDDWSGYAGLGRRGFDHHAIAECGDPEVAEEFLPIVHLVFTNLKTWINGIHHGVSAKHLQAYLNEFTFRFNRRL
YPFNAFRSLLGIAGRAAAPTFDELYSGEWTHPTFSGCG

 

Blast result :
Comments
ISAcr1 is 53% aa similar to ISPosp3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission Genbank.