ISSto12

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1956 bp

Ends


IR Length : 0

IRL : GTAACTTTTAAATACTTTTCATCACTTCTAATTAGTGTGGAGAGATACCT
IRR : AGTGTTTACCCGTGGCGTAACTTATCCTTACTTTTAATCACTTCTAATTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GTAACTTTTAAATACTTTTCATCACTTCTAATTAGTGTGGAGAGATACCTAACTCCAAGTGAGGTTGCCGAAATATTCGGGATGAGTAGGAGTGGGGTGA
TAAAGTGGATCAGGGAGGGGAAGATAAAAGCTATTGAAATTAACGGTAGGTGGAGGATCCCTTACAGCGAAGTAGAGAGGTTGTTGAGCGGTGGCGGTAG
GCTCAAACAGGTCGCAATTTACGCTAGGGTCTCATCAAACACTCAAAAGGACGACTTGGAGAGGCAAATAAACGCGTTGAGGGAATGGGTTAAGAAGAAT
TACGGCAATGTGAGCGTTATTGAGATCAAGGACGTAGGGTCTGGGCTGAAGGAGGACAGAAGGGGGTTAAAGAAGCTGATTGAGTTGTCTAGGAGGAGGC
AGATAGATGTTGTAGTAGTAGCTTACAAGGACAGGCTCACACGCTTCGGCTTCGACTACCTCGTTGAGCTGTTCAAGGCTTACGGGGTTGGCGTAGTCGT
GGCTTTTCAAGAGGAACCAAAGGACTACATGCAAGAGTTAGTGGAGGACTTCGTTGAGATTGTCAGGTCCTTCGCTTCTAGGATCTATGGACATAGATCC
CATAAATACGAGAAGGTGATCAAGTGTGTTGAAGACGCTGAGAAGGACGGTTAGGGTAGAAAGCGATACGCTGAACTACTGGAAGTACCGTGTGTTGAAG
GAGGTCGAGGAAGTCCAGAAACGGATGGTCGACGAGATGATAGAGACAATCCTTAAGGAAAACTTGCCGACCACTAGGAAGAGGTTGCACGAGAGGTTTT
ATAAGTACTACAAGGCTAAGTACCCTTCATTACCTTCGAGGGTTATCGAGGGTGCTTATATTGTAGCTGGTAGGATAGTTAAGAGCTTTAGGGAGAGGAG
GAAGAAAGGGTTAACTAAGAAGGACAAACCAGAGTACAAGAAGGTCGTCGTAATTTATCCCAACAAGATAAACTGGAGGTTCAACAAGCTCTCTGTAAGC
GTTTTGACGCATAAGGGCTGGGTCGAGATCCCATTGAGGATTACTAAACAGCTAATCCGCTATCTTTACGAGGGGTGGAGGGTAGCAGAGGAGCTAAAGC
TAAGGCTCATCGGTAGAAAAGTTGTCATTTGGCTGACTTTCGAGAAGGAGGAAGAAGTGAATGTGAAGGAGGGCAACTATCTCTCCATCGATGTTAACGA
GAACAACGTGACGGTCGCGGTCTTCGAGGGCTTTAAACTGAAGGAGATCAGGCGTTATGAGACCAACTTGGGCAGGATAGTTGTCAACTATGCCATTAGG
AGGAAAGAAATTACTAAAGGATATTCAACTAAGGAGGAGCTAATTAAGAAAAAGCTGAGGAGGTTAAGGGAAAGGGAGAGGAAACTTGACGTGCTGAGGA
AGACTGTTAAGAGAATTGCAGAGCTAGCTAAGAGTTTCAACGCCAGGGTCGTTGTCGGCAAGTTCTCTTCAATGGCTAAGGAGAGGATGGAAAAGGACAA
GAATGACGAACTCAGGCACAGGGTCCACCAATGGAGTGTCGTTAAGTTCGTGGAGTTGCTTAAGGCCCAACCAGTTGACGTTGAGGAGGTCTCCGAGGCT
TACACCTCGTCGATCAACCCTTTTAATGGCAAGAAGTTAAAGAAAAGCAAGCAGATCATTGAGAGAATTGTTAAGGTTTTTAACCCCTACCTAATGACGG
GCACTGCTCACGAGGGTAGGGGGATTAAAGTTTTCAGGGTGAATGCTAGGTACTTGGACGGCGGGGACGTTTTATTGGAGAGGGACTCAATTGCACCTCT
CAACCTCATGAAAAAGGTGGATGGGAGGGTAGTGGTGTTCCCCTCGACCAGCCCCAATGAGTTGAGGGTGACTGTGTATGAGCCCTCAAGAGGGGTGCCC
GTGGTGGAATTAGAAGTGATTAAAAGTAAGGATAAGTTACGCCACGGGTAAACACT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
618 bp205 aa37654+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MERYLTPSEVAEIFGMSRSGVIKWIREGKIKAIEINGRWRIPYSEVERLLSGGGRLKQVAIYARVSSNTQKDDLERQINALREWVKKNYGNVSVIEIKDV
GSGLKEDRRGLKKLIELSRRRQIDVVVVAYKDRLTRFGFDYLVELFKAYGVGVVVAFQEEPKDYMQELVEDFVEIVRSFASRIYGHRSHKYEKVIKCVED
AEKDG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1326 bp441 aa6261951+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLKTLRRTVRVESDTLNYWKYRVLKEVEEVQKRMVDEMIETILKENLPTTRKRLHERFYKYYKAKYPSLPSRVIEGAYIVAGRIVKSFRERRKKGLTKKD
KPEYKKVVVIYPNKINWRFNKLSVSVLTHKGWVEIPLRITKQLIRYLYEGWRVAEELKLRLIGRKVVIWLTFEKEEEVNVKEGNYLSIDVNENNVTVAVF
EGFKLKEIRRYETNLGRIVVNYAIRRKEITKGYSTKEELIKKKLRRLRERERKLDVLRKTVKRIAELAKSFNARVVVGKFSSMAKERMEKDKNDELRHRV
HQWSVVKFVELLKAQPVDVEEVSEAYTSSINPFNGKKLKKSKQIIERIVKVFNPYLMTGTAHEGRGIKVFRVNARYLDGGDVLLERDSIAPLNLMKKVDG
RVVVFPSTSPNELRVTVYEPSRGVPVVELEVIKSKDKLRHG

 

Blast result :
Comments
ISSto12 is 62% (ORF A) aa similar to ISTko1 and 42% (ORF B) to ISPfu4.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140