ISMhu10
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007796 | ND | Methanospirillum hungatei | Methanospirillum hungatei JF-1 |
DNA section
IS Length : 1248 bp
Ends
IR Length : 11
IRL : TAACCCCCTCCGATAATCCGCGGTGTACAAAGAAGATTTTAGAATTATTT
IRR : TAACCCCCTCCTAATTTTATCCGGAAGAGGCTCTCTGTAACTTGTCCTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATTTTTCACTTACCT | CTATTTATAT | AGTAAGTATTCTTTTC | 10 |
DNA sequence
TAACCCCCTCCGATAATCCGCGGTGTACAAAGAAGATTTTAGAATTATTTACACTATTCGCGCGGCTGATAAACTTGGATTGTAAAAGTGCAATGCGGAT
TCAATCCTTTTAAGAATTAAGAAAAAAACCGAAAGATCAATGATAAAAGAGGGAGAATTCTATTTGATAATTTTGAAAACTCCCATAATAGTAGACACTT
CTGATCATAAATGGATTTTGCTGAAGAAAATTCTAGGTGTTTTAGAGACACGTAGATGCCGCCAAGAAATTGCAAAATTTGGGATAAAACCAGCAAATCA
GGCTTACACGAATTTATCTATCGTATTGCTGTCAATGTTTTTTTCAGTAGAAATTTCCTATGCAATAAATGAAATTGAAAAAAGAATAGAATTGCAGCAA
TTTTTACGAATAGATAATATTCTTACTCCTAATGGTGTTTATCGTTTCATGAGTCAATTTTCTGCAGAGCAATTTATTTCAATGACTCATGGTATTTTAA
ACGCAGTTTGCCCCAAGAAACGACATTATTTTCGAAAAACAATAATCATTGATGGGACATCGCTGTCTGTCGATATAAATTGGTTCAGAAAACGCATTCA
AAAATCAAAGTTAGTAAATAAACCCTATAATTGGCAATATTCTCCTTATAAGGGATTTTATATTGGTTTAAAATTAACACTTGCGATCGATCAGAATAAT
CTTCTTCCATTAGCGTTTCTTGTTCATCAGAATCCAGTCGCTGATTCAAAAATATTCCCGTTAATTCTTCAAGAATTGAAACGGAGGAGAATTTTAAACA
AAGGAGATAGAGTGTTACTCGATCGTGGGTACTATTCTTACAAAAATTATGTATTATCATTGATAGAATACAGTGTAATTCCTTTAATTCTTCCGAAAAA
AGGATTTTCATTCTCAAAATTAGAGAACTATTTAATTAGCCCCCTAACATGGTTTGAAAACAAAAAAAGTTACCAAAAAGTCATTGAACTCTCCCATATG
AAAAAAGAACTAAAGGATGCCCTCGAAAATTCGGATGAACTTGCCGCACAAAGATAAATTATTGAAGATGTTTTTAAATTTGGAAAAGAAGCACTGAATT
TAGATAATATTCATCGCTATACTTCCCGCTCTTTAAAAAAAGAGTATTGCATTATGTGCACTTTTAATGGGGCTGCTTATTCATTTCGAATTTAACAAAA
AGGACAAGTTACAGAGAGCCTCTTCCGGATAAAATTAGGAGGGGGTTA
TCAATCCTTTTAAGAATTAAGAAAAAAACCGAAAGATCAATGATAAAAGAGGGAGAATTCTATTTGATAATTTTGAAAACTCCCATAATAGTAGACACTT
CTGATCATAAATGGATTTTGCTGAAGAAAATTCTAGGTGTTTTAGAGACACGTAGATGCCGCCAAGAAATTGCAAAATTTGGGATAAAACCAGCAAATCA
GGCTTACACGAATTTATCTATCGTATTGCTGTCAATGTTTTTTTCAGTAGAAATTTCCTATGCAATAAATGAAATTGAAAAAAGAATAGAATTGCAGCAA
TTTTTACGAATAGATAATATTCTTACTCCTAATGGTGTTTATCGTTTCATGAGTCAATTTTCTGCAGAGCAATTTATTTCAATGACTCATGGTATTTTAA
ACGCAGTTTGCCCCAAGAAACGACATTATTTTCGAAAAACAATAATCATTGATGGGACATCGCTGTCTGTCGATATAAATTGGTTCAGAAAACGCATTCA
AAAATCAAAGTTAGTAAATAAACCCTATAATTGGCAATATTCTCCTTATAAGGGATTTTATATTGGTTTAAAATTAACACTTGCGATCGATCAGAATAAT
CTTCTTCCATTAGCGTTTCTTGTTCATCAGAATCCAGTCGCTGATTCAAAAATATTCCCGTTAATTCTTCAAGAATTGAAACGGAGGAGAATTTTAAACA
AAGGAGATAGAGTGTTACTCGATCGTGGGTACTATTCTTACAAAAATTATGTATTATCATTGATAGAATACAGTGTAATTCCTTTAATTCTTCCGAAAAA
AGGATTTTCATTCTCAAAATTAGAGAACTATTTAATTAGCCCCCTAACATGGTTTGAAAACAAAAAAAGTTACCAAAAAGTCATTGAACTCTCCCATATG
AAAAAAGAACTAAAGGATGCCCTCGAAAATTCGGATGAACTTGCCGCACAAAGATAAATTATTGAAGATGTTTTTAAATTTGGAAAAGAAGCACTGAATT
TAGATAATATTCATCGCTATACTTCCCGCTCTTTAAAAAAAGAGTATTGCATTATGTGCACTTTTAATGGGGCTGCTTATTCATTTCGAATTTAACAAAA
AGGACAAGTTACAGAGAGCCTCTTCCGGATAAAATTAGGAGGGGGTTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 918 bp | 305 aa | 140 | 1057 | + | No |
Chemistry : DDE
ORF sequence :
MIKEGEFYLIILKTPIIVDTSDHKWILLKKILGVLETRRCRQEIAKFGIKPANQAYTNLSIVLLSMFFSVEISYAINEIEKRIELQQFLRIDNILTPNGV
YRFMSQFSAEQFISMTHGILNAVCPKKRHYFRKTIIIDGTSLSVDINWFRKRIQKSKLVNKPYNWQYSPYKGFYIGLKLTLAIDQNNLLPLAFLVHQNPV
ADSKIFPLILQELKRRRILNKGDRVLLDRGYYSYKNYVLSLIEYSVIPLILPKKGFSFSKLENYLISPLTWFENKKSYQKVIELSHMKKELKDALENSDE
LAAQR
YRFMSQFSAEQFISMTHGILNAVCPKKRHYFRKTIIIDGTSLSVDINWFRKRIQKSKLVNKPYNWQYSPYKGFYIGLKLTLAIDQNNLLPLAFLVHQNPV
ADSKIFPLILQELKRRRILNKGDRVLLDRGYYSYKNYVLSLIEYSVIPLILPKKGFSFSKLENYLISPLTWFENKKSYQKVIELSHMKKELKDALENSDE
LAAQR
Blast result :
Comments
ISMhu10 is 65% aa similar to ISMba15.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission Genbank.