ISHma6

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006397 ND Haloarcula marismortui
Haloarcula marismortui chromosome II
DNA section
IS Length : 1069 bp

Ends


IR Length : 24/28

IRL : GAGGGTGTCATAGAACAGTTACCACACCAAAGAGCAGGGTGAATGCTGAG
IRR : GAGGGTGTCATAGAACTCTTCTCACACCGTGATGATCGTGCTTCCCGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
ACCGAGTTTAATTCGAAGTAGTCAATCTCGAGT8

DNA sequence

GAGGGTGTCATAGAACAGTTACCACACCAAAGAGCAGGGTGAATGCTGAGGTGGTATGGACTCAGCGACCCTGCAGAATGAGCCTTCGGTAGAGTCGTTC
TTCAATGTCGCGGAGACCGAGACGTTAGCGTTGTTTGAGCATCTCTCCTTCGAGTTTCTTGGCGAGTTCGACGTGTTCGCCCCGGCGGAGACGGGGCGAA
CACGAGAGCATAAACCACCAGAGATGCTGCGTGGGTTCCTCCACTGCTATTACCGTGATATCTACGGAATTCGTCCTGCTGAGCGGGAGCTTCAGAACAC
GGTTGTCTGGCTGAGCTGTGGCTTCGATCGACCGCCGTCAAGAGACGCGGTCGATCGGTTCCTTACTGACCTCGAACACGTCGTCGACGAAGTCTTTGAC
CACCTCGTCGAGCAGGCCGCCCGGCGCGGCCTGCTCGACTTGACCTACTGCATCGATTCAACCGACGTGAGGGCGATGCCCGCTGACCAAGATGCGTCGA
AATGCTACGATCCAACCGATGAAGAGTACTACTACGGCTACGGCTGTACGATTGTTTCGACCGGACAAAAAATACCGATTGCAGCGGAGTTCACCGAGAG
CAAACAAGCGCCAGAAGAGACGGCGATGCGCGTCACCTGTGACGCGCTCGCCGTCGCCAAGCCGATTTGGATGGTCGGTGACAGCGCCTACGACACCCTC
GACTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGCCCCGTACAATGCTAGAAACGCTGACGACCCGAAAGATATCGAATACAGGGTCGAGG
ACCGCATTGAGAAACACAGCGAGGATGTACAGCTGAAACAATCGATACTAAACCAGACGTACAATCGCCGCACTGGAGTGGAACGAACCAACGAATCAGT
GAAGGACTGCGGCCTCGGGCGAACGCACGCCCGAGGCCGCGCCCACGCACGAGCGCAGGTCTTCCTCGCACTGTGTCTTCGCCTGGTCGTCGCAATCACC
AATTACGAACGCGGAGACAATCCGGGAAGCACGATCATCACGGTGTGAGAAGAGTTCTATGACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa561048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDSATLQNEPSVESFFNVAETETLALFEHLSFEFLGEFDVFAPAETGRTREHKPPEMLRGFLHCYYRDIYGIRPAERELQNTVVWLSCGFDRPPSRDAVD
RFLTDLEHVVDEVFDHLVEQAARRGLLDLTYCIDSTDVRAMPADQDASKCYDPTDEEYYYGYGCTIVSTGQKIPIAAEFTESKQAPEETAMRVTCDALAV
AKPIWMVGDSAYDTLDWHDHLLAAGVVPVAPYNARNADDPKDIEYRVEDRIEKHSEDVQLKQSILNQTYNRRTGVERTNESVKDCGLGRTHARGRAHARA
QVFLALCLRLVVAITNYERGDNPGSTIITV

 

Blast result :
Comments
ISHma6 is 96% aa similar to ISH11.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234