ISMma8
- Family IS630
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei Go1 |
DNA section
IS Length : 1176 bp
Ends
IR Length : 23/30
IRL : TGTCATGGCAACTTAATTTTGAGTCATTATTATAAACTTTGAATCCCATC
IRR : TGTCTTAGCAACTTAATTATGGTGCATAATGCTTGGACATTTTCTCATCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TATTGCAAGG | CTAG | AAAATCTTGTAGAATT | 4 |
DNA sequence
TGTCATGGCAACTTAATTTTGAGTCATTATTATAAACTTTGAATCCCATCTGTATCTTCATTCATGGCAAAAATAAAACTTGAAGAAGATGAGGTGCAGT
ACCTCATAGACTTTGTTAAAAAGGGACAGAAAAGTGCACGAGAACTAACAAGAGCACGAATCCTGTTACTTGCCAACAAGAATAAAAAGAACACCGAGAT
CGTAGAGATATTGAATGTTAGTAGGAATACTGTTGGGCGAATCAAGAAAAGGTACTTGGATGAAGGTCTCCAAAGCGCTCTTGAAGATAAAACAAGAACT
GGCCAGCCTATAAAATACACCGAAAAGCACACGGCTGAAATCATAGCGCAAGCATGTACCAAACCTCCTGATGGAAGAAAAAAGTGGACACTTGTACTGC
TTACTGAAGAACTGAAGATGAGAGAAGGGTTTGAAACAATAAACAAGGAGAGCATCCGGCTTATTCTAAAAAAAGCAAAACTAAACCTTGGTTAAGACGG
ATGTGGTGCATTCAAAAGATAAATGCCGAGTATAGAGAAAGAATGTACAACATTCTCAACCTCTATGAAGAAAAATATGACCCGAAAAAACCTCTCATAT
GCCTTGACGAGAAACCAAAACAACTTCTTGGAGATAAGAGGAAAGCTATCCCAATGAAACCTGGAAGTCCAGAAAAATATGATTACGAATATGTCAGGAA
TGGAACCGCAAATGTATTCGTGGCAGTAGAATTTAAAGCAGGAAAAAGGGTGACTCAAGTCACCGAAAGAAGAACTATGAAGGATTTTGCACAATTCGTG
AAAATTCTCCTTACTGAAAAATATTCTGAAGCTGAAGTCATCCGACTGGTTACGGATAATCTCAATATCCATAAAGAAAAGTCATTCTACGAAACATTCA
GCGAAGAGGAAGCAAAAAAGATTCTGGACAAGATAGAATTCCATTACACACCAAAACATGCAAGTTGGCTTAATGCTGCAGAAATAGAGATCAATGTAAT
GGATATTGAATGTACAGACAGAAGGATCGGAGATATGCAGACACTTACCCACGAAGTGGGTGCATGGACAAAGAGAAGAAATGAACATGAAAGTAAGATC
AACTGGAAGTTTACGAGAAAAGTTGCTGATGAGAAAATGTCCAAGCATTATGCACCATAATTAAGTTGCTAAGACA
ACCTCATAGACTTTGTTAAAAAGGGACAGAAAAGTGCACGAGAACTAACAAGAGCACGAATCCTGTTACTTGCCAACAAGAATAAAAAGAACACCGAGAT
CGTAGAGATATTGAATGTTAGTAGGAATACTGTTGGGCGAATCAAGAAAAGGTACTTGGATGAAGGTCTCCAAAGCGCTCTTGAAGATAAAACAAGAACT
GGCCAGCCTATAAAATACACCGAAAAGCACACGGCTGAAATCATAGCGCAAGCATGTACCAAACCTCCTGATGGAAGAAAAAAGTGGACACTTGTACTGC
TTACTGAAGAACTGAAGATGAGAGAAGGGTTTGAAACAATAAACAAGGAGAGCATCCGGCTTATTCTAAAAAAAGCAAAACTAAACCTTGGTTAAGACGG
ATGTGGTGCATTCAAAAGATAAATGCCGAGTATAGAGAAAGAATGTACAACATTCTCAACCTCTATGAAGAAAAATATGACCCGAAAAAACCTCTCATAT
GCCTTGACGAGAAACCAAAACAACTTCTTGGAGATAAGAGGAAAGCTATCCCAATGAAACCTGGAAGTCCAGAAAAATATGATTACGAATATGTCAGGAA
TGGAACCGCAAATGTATTCGTGGCAGTAGAATTTAAAGCAGGAAAAAGGGTGACTCAAGTCACCGAAAGAAGAACTATGAAGGATTTTGCACAATTCGTG
AAAATTCTCCTTACTGAAAAATATTCTGAAGCTGAAGTCATCCGACTGGTTACGGATAATCTCAATATCCATAAAGAAAAGTCATTCTACGAAACATTCA
GCGAAGAGGAAGCAAAAAAGATTCTGGACAAGATAGAATTCCATTACACACCAAAACATGCAAGTTGGCTTAATGCTGCAGAAATAGAGATCAATGTAAT
GGATATTGAATGTACAGACAGAAGGATCGGAGATATGCAGACACTTACCCACGAAGTGGGTGCATGGACAAAGAGAAGAAATGAACATGAAAGTAAGATC
AACTGGAAGTTTACGAGAAAAGTTGCTGATGAGAAAATGTCCAAGCATTATGCACCATAATTAAGTTGCTAAGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1097 bp | 365 aa | 64 | 1160 | + | No |
Chemistry : DDE
ORF sequence :
MAKIKLEEDEVQYLIDFVKKGQKSARELTRARILLLANKNKKNTEIVEILNVSRNTVGRIKKRYLDEGLQSALEDKTRTGQPIKYTEKHTAEIIAQACTK
PPDGRKKWTLVLLTEELKMREGFETINKESIRLILKKSKTKPWLRRMWCIQKINAEYRERMYNILNLYEEKYDPKKPLICLDEKPKQLLGDKRKAIPMKP
GSPEKYDYEYVRNGTANVFVAVEFKAGKRVTQVTERRTMKDFAQFVKILLTEKYSEAEVIRLVTDNLNIHKEKSFYETFSEEEAKKILDKIEFHYTPKHA
SWLNAAEIEINVMDIECTDRRIGDMQTLTHEVGAWTKRRNEHESKINWKFTRKVADEKMSKHYAP
PPDGRKKWTLVLLTEELKMREGFETINKESIRLILKKSKTKPWLRRMWCIQKINAEYRERMYNILNLYEEKYDPKKPLICLDEKPKQLLGDKRKAIPMKP
GSPEKYDYEYVRNGTANVFVAVEFKAGKRVTQVTERRTMKDFAQFVKILLTEKYSEAEVIRLVTDNLNIHKEKSFYETFSEEEAKKILDKIEFHYTPKHA
SWLNAAEIEINVMDIECTDRRIGDMQTLTHEVGAWTKRRNEHESKINWKFTRKVADEKMSKHYAP
Blast result :
Comments
ISMma8 is 88% aa similar to ISMac17.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baeumer,S., Jacobi,C., Brueggemann,H., Lienard,T., Christmann,A., Boemecke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.-P., Gunsalus,R.P., Fritz,H.-J. and Gottschalk,G. (2002)J. Mol. Microbiol. Biotechnol.