ISfinder Mirror Site

ISSto5

Family IS110
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_003106	ND	Sulfolobus tokodaii	Sulfolobus tokodaii

DNA section

IS Length : 1191 bp

Ends

Left end : CTTATATAAAACATATTAGTCAGATCTGCGTAATACAGATCTGACTGGGGTTGAGGCCGTTGACTTCCTTGGGCTCAAAGCTCGACGGGGAGCTTGGCCC
Right end : TGATGCTGGCGAGTGATAAGGAGAGTCTTGTTTTTCAGAAGTAGTGTGGACTATGCTTGATTTTCGATGGAAAGGTTTTTATACCGGAAGCTCCACACTC

Insertion site

Left flank	Direct repeat	Right flank	DR Length

DNA sequence

CTTATATAAAACATATTAGTCAGATCTGCGTAATACAGATCTGACTGGGGTTGAGGCCGTTGACTTCCTTGGGCTCAAAGCTCGACGGGGAGCTTGGCCC
GCCTCCAAATTCGTACCGGAAGTTGGGCTTGAAGCTCGAATAAAACATAAGGGTGAGTATATATGGAGGCCCCAGTTGCAGGAATAGATATATCAAAAGA
TAAATTAGTAGTGTATTTCCAAGGTAAATTATATGAGTTTCCTAATAATAAGCAAGGGTTTGAGGGAGTAAAGCAAATCTTGCCTAAGGGTTGCAAGATA
GGTATTGAAAGTACTGGAGTTTACCACATTAACTTGGTTAAGTACTTGGGTAATGAGTATGATGTTAGGATTATTAACCCCTTAGTACTCAAGAGGTTTA
AGGATTTTAGGGGTAAAAAGAGTGATAAGAATGATGCTAAAAAGCTTGCGGAATTAGTTGTTAATATGGGTAGTGTAACTAATGAGGCTAGGGAGTTAAC
AAGCCAATGGGATTTTGTGACAAGAAGTATTGTTAGGGTTAAGAATAGGTTGAGGAGGGATTTAATCCTCTTGGGTTATAGGGATAGTTTGTCCAAGGAG
AACTTGAATGAGGTATTGAGAGGGGAGGATAATGTAGTGTTGTCTGAGGTTAGGTTTCTTTTAGGGGAACTGGAGAGGCTTGAGGGTAGGAAGAGGGAGA
TTGAGGAGGAGCTTGAGAATTTTGTTCCCAAGGATAGTTTGATTTTCACTATTCCGGGTATTGGTAGGACGCTGGGTTGTATTATTTTGGCTAGGGTTGG
TGATGTTAGGCGTTTTTCTGATAAGAGGAGGTTTGTTGCTTATTGTGGTCTTGATCCGGTTGTTGAGTCTAGTGGGAAGGGTGTTGTTTCAAGGGGTATT
TCTAAGAAAGGTGATGCTGTTTTGAGGAGGGCTTTTTATCTTGCAGCTTTAACTGCTATTAGGGTTAACCCTGTTATTAAGCGTTTTTATGAGGAGCACA
AGGGAAGGTTGAGGGGTAATAAGTTGATTATTGCTTGTGCAAGGAAGCTTGCTGTTATTACTTGGGCTGTACTGTATTATAATAAGCCCTTTGATGCTGG
CGAGTGATAAGGAGAGTCTTGTTTTTCAGAAGTAGTGTGGACTATGCTTGATTTTCGATGGAAAGGTTTTTATACCGGAAGCTCCACACTC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
945 bp	314 aa	163	1107	+	No

ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MEAPVAGIDISKDKLVVYFQGKLYEFPNNKQGFEGVKQILPKGCKIGIESTGVYHINLVKYLGNEYDVRIINPLVLKRFKDFRGKKSDKNDAKKLAELVV
NMGSVTNEARELTSQWDFVTRSIVRVKNRLRRDLILLGYRDSLSKENLNEVLRGEDNVVLSEVRFLLGELERLEGRKREIEEELENFVPKDSLIFTIPGI
GRTLGCIILARVGDVRRFSDKRRFVAYCGLDPVVESSGKGVVSRGISKKGDAVLRRAFYLAALTAIRVNPVIKRFYEEHKGRLRGNKLIIACARKLAVIT
WAVLYYNKPFDAGE

Blast result :

Comments

ISSto5 is 94% aa similar to ISC1190.

References

1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140