ISMth2
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAOR01000001 | ND | Methanosaeta thermophila | Methanosaeta thermophila PT |
DNA section
IS Length : 1723 bp
Ends
IR Length : 16/19
IRL : CCTGCATTTCGCATTAACGTTGATTTTCCAAACAATTTCCTGGGATGGGG
IRR : CCCACATTCCGCATTAACGCTCCATTCCGTAGTATTTTTCGCATTCTGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACAAAGCTTGCCGATTTGC | ATTTAT | GTTCTCCTATTACTAT | 6 |
DNA sequence
CCTGCATTTCGCATTAACGTTGATTTTCCAAACAATTTCCTGGGATGGGGCGTGTGGCAAACGTTTTAAGCTGCACCAAGGGTTTTGTTCTGAGGAGCAG
CTTAGATGGAGACAGACACGCGATCGCTGGATCATTTGGGGATAGTTGCGGCGGTTTTCGACCGGCTTGGCATAGCGGATGTTATAGATTCGCGTATGCC
GAAGTTGAGGCAGCACAAGCTGGAACATTCGGTGATTGTTAAGGCGATGGTTCTGAACGGTCTTGGTTTTGTGGGTCAGAGGTTGTACCTGTTTCCGGAG
TTCTACGAGAGGCTGCCTGTTGAGAGGCTTCTTGGGGATGGAGTTAACGCATCTGATTTGAACGATGATGCGATAGGCAGGACGCTGGATGCGATTTATG
AGCAAGGTGCTACGGATCTTTTCAACGAGATAGCGTTGAAGGTGATGGGAGAGCTCGAGCTTGGAGTCCAGAGGTTGCACGCAGACACCACAAGCTTCAG
CGTTCATGGCAGCTATGAGGGTTTCAATGGCGGTAGATCGATTGAGATAACGTTGGGCCATTCGAAGGACAGCCGGATGGATCTGAAACAGTTTGTTCTC
AGTCTTGTGACGAACCAGGACGGTATACCGCTTTTTGCAAAAGCGCATTCAGGTAACGCATCCGACAGGAACACGATCATAGAGTCGTTTTTAAAGATCA
AATCCGGACTCAACCTTGAAGACTGCGCGTATTACATAGCAGACAGTGCAGTCTACACCGAGCCCAACATCAGGATGCTCGGCAGGGAGATGAAATGGAT
AACACGTGTCCCGGCCACGATAAAGGAGTGTGAGATGCTTCTTGACAGCGATGTTGAGATGGTTGAGTGTCGCGACGCCAGGTACAGATGCTTCTCGACG
ACCTCTGATTACGGCGGAGTACAGCAGAAGTGGGTCCTTTACCAGTCAGAACCGATGCGAGATCTCAAGGCAGAGAGGTTCGAGAATCATCTTGAAAAGG
ACGGGACAAAAGCAAGACGGTCTCTGGCAAAACTGAAACGGCGTGAGTTCGCATGCGAAGCAGACGCACTGAAAGAAACTGAACTGTGGGCCAGAGACCA
TCCGCTCTACAGGTTCAGCCATATCTCTCTCAAAAAGGTCTGCAAACGAGCAGATAAAAAACGAGGACGACCTAAAAACGGCGAAAAACTCATCGAAATA
TATTTTATAGACGCGGATATCGAACTCGACCAGGAAAAAGTCGAAAAAACGAAATCCAGGCTCGGAAGGTTTATAATCGCAACTAACGACCTCAATATCG
ACCCTGATACACTACTCAGCTACTATAAAGGACAGCAAGAGGTAGAACGCGGATTCAGGTTCCTCAAAGACAAAAGCTTCCGAGTCGCAGAGGTCTACCT
CAAAAAAGAAGAACGCATCGAAGCTCTCGCCATGATCATGGTCCTCTCACTCATGATCTATTCCGTGGCAGAGTGGCTGATCAGAAAAAGGTTGCAAGAA
TCAAATCAATCCATACCAAATCAGCTGAAGAAACCCACACAAAAACCAACTCTCAAGTGGATCGCGTTCATGTTCCTCGGTGTCACCGAAGTCAACATAT
GGCTGTGCGGCGAGAAACACCAGAAAATCGCTAACCTCAACGAGAATACTTTGAAAATAATAAAACTGTTTGGACCAGAATGCGAAAAATACTACGGAAT
GGAGCGTTAATGCGGAATGTGGG
CTTAGATGGAGACAGACACGCGATCGCTGGATCATTTGGGGATAGTTGCGGCGGTTTTCGACCGGCTTGGCATAGCGGATGTTATAGATTCGCGTATGCC
GAAGTTGAGGCAGCACAAGCTGGAACATTCGGTGATTGTTAAGGCGATGGTTCTGAACGGTCTTGGTTTTGTGGGTCAGAGGTTGTACCTGTTTCCGGAG
TTCTACGAGAGGCTGCCTGTTGAGAGGCTTCTTGGGGATGGAGTTAACGCATCTGATTTGAACGATGATGCGATAGGCAGGACGCTGGATGCGATTTATG
AGCAAGGTGCTACGGATCTTTTCAACGAGATAGCGTTGAAGGTGATGGGAGAGCTCGAGCTTGGAGTCCAGAGGTTGCACGCAGACACCACAAGCTTCAG
CGTTCATGGCAGCTATGAGGGTTTCAATGGCGGTAGATCGATTGAGATAACGTTGGGCCATTCGAAGGACAGCCGGATGGATCTGAAACAGTTTGTTCTC
AGTCTTGTGACGAACCAGGACGGTATACCGCTTTTTGCAAAAGCGCATTCAGGTAACGCATCCGACAGGAACACGATCATAGAGTCGTTTTTAAAGATCA
AATCCGGACTCAACCTTGAAGACTGCGCGTATTACATAGCAGACAGTGCAGTCTACACCGAGCCCAACATCAGGATGCTCGGCAGGGAGATGAAATGGAT
AACACGTGTCCCGGCCACGATAAAGGAGTGTGAGATGCTTCTTGACAGCGATGTTGAGATGGTTGAGTGTCGCGACGCCAGGTACAGATGCTTCTCGACG
ACCTCTGATTACGGCGGAGTACAGCAGAAGTGGGTCCTTTACCAGTCAGAACCGATGCGAGATCTCAAGGCAGAGAGGTTCGAGAATCATCTTGAAAAGG
ACGGGACAAAAGCAAGACGGTCTCTGGCAAAACTGAAACGGCGTGAGTTCGCATGCGAAGCAGACGCACTGAAAGAAACTGAACTGTGGGCCAGAGACCA
TCCGCTCTACAGGTTCAGCCATATCTCTCTCAAAAAGGTCTGCAAACGAGCAGATAAAAAACGAGGACGACCTAAAAACGGCGAAAAACTCATCGAAATA
TATTTTATAGACGCGGATATCGAACTCGACCAGGAAAAAGTCGAAAAAACGAAATCCAGGCTCGGAAGGTTTATAATCGCAACTAACGACCTCAATATCG
ACCCTGATACACTACTCAGCTACTATAAAGGACAGCAAGAGGTAGAACGCGGATTCAGGTTCCTCAAAGACAAAAGCTTCCGAGTCGCAGAGGTCTACCT
CAAAAAAGAAGAACGCATCGAAGCTCTCGCCATGATCATGGTCCTCTCACTCATGATCTATTCCGTGGCAGAGTGGCTGATCAGAAAAAGGTTGCAAGAA
TCAAATCAATCCATACCAAATCAGCTGAAGAAACCCACACAAAAACCAACTCTCAAGTGGATCGCGTTCATGTTCCTCGGTGTCACCGAAGTCAACATAT
GGCTGTGCGGCGAGAAACACCAGAAAATCGCTAACCTCAACGAGAATACTTTGAAAATAATAAAACTGTTTGGACCAGAATGCGAAAAATACTACGGAAT
GGAGCGTTAATGCGGAATGTGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1605 bp | 534 aa | 106 | 1710 | + | No |
Chemistry : DDE
ORF sequence :
METDTRSLDHLGIVAAVFDRLGIADVIDSRMPKLRQHKLEHSVIVKAMVLNGLGFVGQRLYLFPEFYERLPVERLLGDGVNASDLNDDAIGRTLDAIYEQ
GATDLFNEIALKVMGELELGVQRLHADTTSFSVHGSYEGFNGGRSIEITLGHSKDSRMDLKQFVLSLVTNQDGIPLFAKAHSGNASDRNTIIESFLKIKS
GLNLEDCAYYIADSAVYTEPNIRMLGREMKWITRVPATIKECEMLLDSDVEMVECRDARYRCFSTTSDYGGVQQKWVLYQSEPMRDLKAERFENHLEKDG
TKARRSLAKLKRREFACEADALKETELWARDHPLYRFSHISLKKVCKRADKKRGRPKNGEKLIEIYFIDADIELDQEKVEKTKSRLGRFIIATNDLNIDP
DTLLSYYKGQQEVERGFRFLKDKSFRVAEVYLKKEERIEALAMIMVLSLMIYSVAEWLIRKRLQESNQSIPNQLKKPTQKPTLKWIAFMFLGVTEVNIWL
CGEKHQKIANLNENTLKIIKLFGPECEKYYGMER
GATDLFNEIALKVMGELELGVQRLHADTTSFSVHGSYEGFNGGRSIEITLGHSKDSRMDLKQFVLSLVTNQDGIPLFAKAHSGNASDRNTIIESFLKIKS
GLNLEDCAYYIADSAVYTEPNIRMLGREMKWITRVPATIKECEMLLDSDVEMVECRDARYRCFSTTSDYGGVQQKWVLYQSEPMRDLKAERFENHLEKDG
TKARRSLAKLKRREFACEADALKETELWARDHPLYRFSHISLKKVCKRADKKRGRPKNGEKLIEIYFIDADIELDQEKVEKTKSRLGRFIIATNDLNIDP
DTLLSYYKGQQEVERGFRFLKDKSFRVAEVYLKKEERIEALAMIMVLSLMIYSVAEWLIRKRLQESNQSIPNQLKKPTQKPTLKWIAFMFLGVTEVNIWL
CGEKHQKIANLNENTLKIIKLFGPECEKYYGMER
Blast result :
Comments
ISMth2 is 71% aa similar to ISMma18.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. ( 2006) Direct submission GenBank.