ISMba11
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1718 bp
Ends
IR Length : 19/23
IRL : CGCACTTTCCGCAGTAAATTTTCTGGATTTGATATTTTTCAAATCATGTA
IRR : CCTACTTTCCGCAGTATTTTTTCACATATAATATTTTTCGTATTTTTCTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATTGGGAAGGAATA | ATGAAC | TACTTTGATTCCAAAA | 6 |
DNA sequence
CGCACTTTCCGCAGTAAATTTTCTGGATTTGATATTTTTCAAATCATGTACTTACTTTTTATAAAATCTCATCCAATTTCCCCTTGATGACTCTCTCTCC
CAGCTCTGAATCCACAACTCATCTTGGTCATTATGGTCTTATTGCTGGCGTATTTGACGAACTTGAAATTTCAGATTTGATTGACACTCTTCTTCCTAAG
AAAAGTGGCCATAACATTTCTCATTCTACTGTTCTTAAGGCAATGTGCATTAACGGTTTAGGATTTACTGAACGTCGTCTTTACCTATTTCCTGCTTTCT
TTGAAAACTTGCCCACTGAAAGGTTACTGGGAGAAGGTGTTCTCCCAGAACACCTTAATGATGACGTTTTTGGCAGAACTCTGGACAAAATCCAGGAATA
TGGAGCAACCGAAATCTTCAATCATATAATTCTGCAAGCCATGAAACACGTTCCTATTAATCCTCGTTTTTGTCATTCAGATACTACAAATTTCAGTGTT
TATGGTGACTATAAAAACGATGATAACGGCAAAACTATCAACATTACTTATGGTCATCCTAAAGATAAGAGAGTCGATTTACTTCGTTTTTCTATTTCTA
TGGTTACTGATCAGAAAGGAATTCCTCTGTTTGTGAGAGCGTTAGATGGTAACAGTTCCGATAAGAAAGTTCTCATCAAAACCATAAAGGAAGTAACACA
GAACCTGAATCTTGATCAGAGAGTCTACCATATTGCAGACAGTGCATTTTATACTGAAGATAATGTCAAAGAGATAGGAACTAACGCTTTTTTCATCTCG
AGAGTACCTGCAACCATCAATGAATCAAAGGAATTATTGATGACAGACTTAATTCTGGAAACATGCTCTGATGAACGTTATTCTTGTTCTGCTGTAAAAT
CCTGTTATGGTGGAGTAGAACAGTTATGGGTTGTATTCTGTTCAGAGGAAATGAAAAAGAAGGAAGAGAAGAAATTTGATGAAAAGATTCTCAAAGAGCT
TGAAGCAGCAGAAAAGTCTCTTAAAAAGCTTTCTAATCATGAGTTTGCTTGTGAAGCAGACGCAAGAATGGCTGCTGAACAATGGTTGAAAGAGAATGAA
CTGTATGAATTCCAGAAACTTGAAATAAAAACTAAGTCACACAGACTTGAAAACAAGAAAGGAAGACCAAGGAAAGGTGAAGATGTACAGACTTTTTACC
TGATAGAAGCAGAGATAAAACACGACCAGGAGAAAGTACAGGAAAAAAGAGCAAAGTTAGGAAGGTTCATTCTTGCAACCAATGATCTGGAGTTGACTCC
AGATCAACTCCTAAAGTACTATAAAGAACAGGGAACAGTTGAAAGAGGGTTCAGGTTCCTTAAAGATAAGAGTTTCAGAGTGTCTGAGGTGTACCTGAAA
AAAGAGTCCAGAATAGAAGCACTTGCAATGGTAATGGTTCTGTGTTTGTTATTGTATTCAATAGCTGAATGGAAACTGAGAACAAGATTGGAGGAAACAA
AAGAAGCTATTAGAAACCAAGTAAAGAAGAAAACACAGACTCCAACAATGAAATGGGTATTCTTTCAGTTCAGGAGAATAACAGAGTTAGAGATCGAAAT
TGAGGGAAAGAGGATAAAGAAGGTATTAAATCTGGATGAAGAAACAATTAAAGTGCTGAGATTGATGGGAGAAAAATACGAAAAATATTATATGTGAAAA
AATACTGCGGAAAGTAGG
CAGCTCTGAATCCACAACTCATCTTGGTCATTATGGTCTTATTGCTGGCGTATTTGACGAACTTGAAATTTCAGATTTGATTGACACTCTTCTTCCTAAG
AAAAGTGGCCATAACATTTCTCATTCTACTGTTCTTAAGGCAATGTGCATTAACGGTTTAGGATTTACTGAACGTCGTCTTTACCTATTTCCTGCTTTCT
TTGAAAACTTGCCCACTGAAAGGTTACTGGGAGAAGGTGTTCTCCCAGAACACCTTAATGATGACGTTTTTGGCAGAACTCTGGACAAAATCCAGGAATA
TGGAGCAACCGAAATCTTCAATCATATAATTCTGCAAGCCATGAAACACGTTCCTATTAATCCTCGTTTTTGTCATTCAGATACTACAAATTTCAGTGTT
TATGGTGACTATAAAAACGATGATAACGGCAAAACTATCAACATTACTTATGGTCATCCTAAAGATAAGAGAGTCGATTTACTTCGTTTTTCTATTTCTA
TGGTTACTGATCAGAAAGGAATTCCTCTGTTTGTGAGAGCGTTAGATGGTAACAGTTCCGATAAGAAAGTTCTCATCAAAACCATAAAGGAAGTAACACA
GAACCTGAATCTTGATCAGAGAGTCTACCATATTGCAGACAGTGCATTTTATACTGAAGATAATGTCAAAGAGATAGGAACTAACGCTTTTTTCATCTCG
AGAGTACCTGCAACCATCAATGAATCAAAGGAATTATTGATGACAGACTTAATTCTGGAAACATGCTCTGATGAACGTTATTCTTGTTCTGCTGTAAAAT
CCTGTTATGGTGGAGTAGAACAGTTATGGGTTGTATTCTGTTCAGAGGAAATGAAAAAGAAGGAAGAGAAGAAATTTGATGAAAAGATTCTCAAAGAGCT
TGAAGCAGCAGAAAAGTCTCTTAAAAAGCTTTCTAATCATGAGTTTGCTTGTGAAGCAGACGCAAGAATGGCTGCTGAACAATGGTTGAAAGAGAATGAA
CTGTATGAATTCCAGAAACTTGAAATAAAAACTAAGTCACACAGACTTGAAAACAAGAAAGGAAGACCAAGGAAAGGTGAAGATGTACAGACTTTTTACC
TGATAGAAGCAGAGATAAAACACGACCAGGAGAAAGTACAGGAAAAAAGAGCAAAGTTAGGAAGGTTCATTCTTGCAACCAATGATCTGGAGTTGACTCC
AGATCAACTCCTAAAGTACTATAAAGAACAGGGAACAGTTGAAAGAGGGTTCAGGTTCCTTAAAGATAAGAGTTTCAGAGTGTCTGAGGTGTACCTGAAA
AAAGAGTCCAGAATAGAAGCACTTGCAATGGTAATGGTTCTGTGTTTGTTATTGTATTCAATAGCTGAATGGAAACTGAGAACAAGATTGGAGGAAACAA
AAGAAGCTATTAGAAACCAAGTAAAGAAGAAAACACAGACTCCAACAATGAAATGGGTATTCTTTCAGTTCAGGAGAATAACAGAGTTAGAGATCGAAAT
TGAGGGAAAGAGGATAAAGAAGGTATTAAATCTGGATGAAGAAACAATTAAAGTGCTGAGATTGATGGGAGAAAAATACGAAAAATATTATATGTGAAAA
AATACTGCGGAAAGTAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1611 bp | 536 aa | 87 | 1697 | + | No |
Chemistry : DDE
ORF sequence :
MTLSPSSESTTHLGHYGLIAGVFDELEISDLIDTLLPKKSGHNISHSTVLKAMCINGLGFTERRLYLFPAFFENLPTERLLGEGVLPEHLNDDVFGRTLD
KIQEYGATEIFNHIILQAMKHVPINPRFCHSDTTNFSVYGDYKNDDNGKTINITYGHPKDKRVDLLRFSISMVTDQKGIPLFVRALDGNSSDKKVLIKTI
KEVTQNLNLDQRVYHIADSAFYTEDNVKEIGTNAFFISRVPATINESKELLMTDLILETCSDERYSCSAVKSCYGGVEQLWVVFCSEEMKKKEEKKFDEK
ILKELEAAEKSLKKLSNHEFACEADARMAAEQWLKENELYEFQKLEIKTKSHRLENKKGRPRKGEDVQTFYLIEAEIKHDQEKVQEKRAKLGRFILATND
LELTPDQLLKYYKEQGTVERGFRFLKDKSFRVSEVYLKKESRIEALAMVMVLCLLLYSIAEWKLRTRLEETKEAIRNQVKKKTQTPTMKWVFFQFRRITE
LEIEIEGKRIKKVLNLDEETIKVLRLMGEKYEKYYM
KIQEYGATEIFNHIILQAMKHVPINPRFCHSDTTNFSVYGDYKNDDNGKTINITYGHPKDKRVDLLRFSISMVTDQKGIPLFVRALDGNSSDKKVLIKTI
KEVTQNLNLDQRVYHIADSAFYTEDNVKEIGTNAFFISRVPATINESKELLMTDLILETCSDERYSCSAVKSCYGGVEQLWVVFCSEEMKKKEEKKFDEK
ILKELEAAEKSLKKLSNHEFACEADARMAAEQWLKENELYEFQKLEIKTKSHRLENKKGRPRKGEDVQTFYLIEAEIKHDQEKVQEKRAKLGRFILATND
LELTPDQLLKYYKEQGTVERGFRFLKDKSFRVSEVYLKKESRIEALAMVMVLCLLLYSIAEWKLRTRLEETKEAIRNQVKKKTQTPTMKWVFFQFRRITE
LEIEIEGKRIKKVLNLDEETIKVLRLMGEKYEKYYM
Blast result :
Comments
ISMba11 is 96% aa similar to ISMac6.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Diect submission GenBank.