ISBaov1

  • Family IS1380
  • Group IS942
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ557257 ND Bacteroides ovatus
Bacteroides intestinalis DSM 17393
Bacteroides ovatus
DNA section
IS Length : 1594 bp

Ends


IR Length : 13/15

IRL : CCTTAATTCCGCAACACTATTATAAATATAACTTTTTAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACTAAGTCCTTCATCGTCCTATTTACGTGTACACGTT

Insertion site


Left flankDirect repeatRight flankDR Length
CATCTTTTATATACTTATGAAAAGCGTATT0

DNA sequence

CCTTAATTCCGCAACACTATTATAAATATAACTTTTTAAGTACCTGAGCAACAAAAAGTTGCTCAGGATTTTGTCATGTCAGATTTTTCACCTATCTTAG
TGTTGCAAATCAAAATATGTATCAAACCCGACAGACATGGCAAAGAAAGCAATAAAATCTGAGAAACTCACTCCTTTTGGAGGAATATTTGCAATGATGG
AGCAATTTGACTCCACATTGTCATATGTAATTGACACAACCCTCGGTCTAAGATGCAGGCTGTATGGTTATCAATACAGCGAAATCATCCGTTCTCTCAT
GAGCATCTACTTCTGTGGCGGCTCATGTATTGAGGATGTCACAACTCATTTGATGCCCCATCTCTCGCTTCATCCGACACTTCGTACCTGCAGCTCTGAC
ACTATCCTCAGAGCGATAAAGGAACTGACGCAGGAGAACATTTCATACACGTCAGATACGGGTAAGAACTACGATTTCAATACGGCTGACACCCTCAATA
CCTTACTGCTCAATTGTATGTGTGCAGCTGGTCAGCTGAAAGAGGGTGAGATGTATGATGTTGATTTCGACCACCAGTTCATAGAAACAGAGAAATATGA
TGCAAAGCATACATACAAGAAGTTCCTTGGTTATCGACCAGGTGTGGCGGTTATTGGAGATTTGATTGTCGGCATTGAGAACAGCGACGGCAACACAAAC
GTCCGTTTCCATCAGAAGGACACGCTGAAGAGATTCTTCGAAAGGTTTGAACAGAACAATCTTGTTATCAATCGTTTCAGAGCTGATTGCGGCTCGTGCT
CTGAAGAGATCGTGGAAGAGGTTGCCACCCACTGCAAGACCTTCTATATCCGTGCCAACCGCTGTAGTTCGCTCTACAATGACCTCTTCGCTCTCAGAGG
CTGGAAGAGGGGAGAAATCAACGGCATTGAGTTTGAGCTGAATTCCATTCTTGTAGAGAAGTGGAAAGGCAAGACATACCGGCTTGTGATTCAAAGGCGG
AAACGGATGGACGGTGAGCTTGACCTCTGGGAAGGAGAATACACATACCGCTGCATCCTGACCAACGACTACGAGCCTTCCGTAAGAGAGATTGTCGAGT
TCTATAACCTCCGCGGAGGAAAGGAGCGCATCTTCGATGACATGAACAATGGTTTCGGATGGTCCAGATTGCCCAAATCCTTCATGGCAGAGAACACAGT
GTTCCTTCTTCTTACAGCACTTATCCGTAACTTCTACAAGGTCATTATCCAAAGACTTGACGTAAAGAGGTTCGGACCCAATAAAACAAGTCGCATAAAA
GCGTTTGTCTTCAGATTTGTCTCTGTACCAGCCAAATGGATCAGAACATCAAGGTGGTATGTGCTGAATATCTATACCTGTAATAATGCTTACGCAGATG
TATTCCAGACTGATTTTGGATGACGACTACAACTTATGGGTATGATACTGCGTATTGTCTCAAGTCGCATTGTGGGGTAAGGGGGTATTGTAGGCAGAAG
TGGGTATTTCAGCCTCAATTTATCTAATAATTCAGTAATGAGAGAACGTGTACACGTAAATAGGACGATGAAGGACTTAGTTGCGGATTTGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa1941423+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMEQFDSTLSYVIDTTLGLRCRLYGYQYSEIIRSLMSIYFCGGSCIEDVTTHLMPHLSLHPTLRTCSSDTILRAIKELTQENISYTSDTGKNYDFNTADT
LNTLLLNCMCAAGQLKEGEMYDVDFDHQFIETEKYDAKHTYKKFLGYRPGVAVIGDLIVGIENSDGNTNVRFHQKDTLKRFFERFEQNNLVINRFRADCG
SCSEEIVEEVATHCKTFYIRANRCSSLYNDLFALRGWKRGEINGIEFELNSILVEKWKGKTYRLVIQRRKRMDGELDLWEGEYTYRCILTNDYEPSVREI
VEFYNLRGGKERIFDDMNNGFGWSRLPKSFMAENTVFLLLTALIRNFYKVIIQRLDVKRFGPNKTSRIKAFVFRFVSVPAKWIRTSRWYVLNIYTCNNAY
ADVFQTDFG

 

Blast result :
Comments
ISBaov1 is 86% aa similar to IS942. ISBaov1 was found inserted in conjugative transposon CTnGERM1.
References
1] Wang,Y., Wang,G.R., Shelby,A., Shoemaker,N.B. and Salyers,A.A.(2003) Appl. Environ. Microbiol. 69 (8), 4595-4603