ISBaov1
- Family IS1380
- Group IS942
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ557257 | ND | Bacteroides ovatus | Bacteroides intestinalis DSM 17393 Bacteroides ovatus |
DNA section
IS Length : 1594 bp
Ends
IR Length : 13/15
IRL : CCTTAATTCCGCAACACTATTATAAATATAACTTTTTAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACTAAGTCCTTCATCGTCCTATTTACGTGTACACGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATCTTTTATATA | CTTATGAAAAGCGTATT | 0 |
DNA sequence
CCTTAATTCCGCAACACTATTATAAATATAACTTTTTAAGTACCTGAGCAACAAAAAGTTGCTCAGGATTTTGTCATGTCAGATTTTTCACCTATCTTAG
TGTTGCAAATCAAAATATGTATCAAACCCGACAGACATGGCAAAGAAAGCAATAAAATCTGAGAAACTCACTCCTTTTGGAGGAATATTTGCAATGATGG
AGCAATTTGACTCCACATTGTCATATGTAATTGACACAACCCTCGGTCTAAGATGCAGGCTGTATGGTTATCAATACAGCGAAATCATCCGTTCTCTCAT
GAGCATCTACTTCTGTGGCGGCTCATGTATTGAGGATGTCACAACTCATTTGATGCCCCATCTCTCGCTTCATCCGACACTTCGTACCTGCAGCTCTGAC
ACTATCCTCAGAGCGATAAAGGAACTGACGCAGGAGAACATTTCATACACGTCAGATACGGGTAAGAACTACGATTTCAATACGGCTGACACCCTCAATA
CCTTACTGCTCAATTGTATGTGTGCAGCTGGTCAGCTGAAAGAGGGTGAGATGTATGATGTTGATTTCGACCACCAGTTCATAGAAACAGAGAAATATGA
TGCAAAGCATACATACAAGAAGTTCCTTGGTTATCGACCAGGTGTGGCGGTTATTGGAGATTTGATTGTCGGCATTGAGAACAGCGACGGCAACACAAAC
GTCCGTTTCCATCAGAAGGACACGCTGAAGAGATTCTTCGAAAGGTTTGAACAGAACAATCTTGTTATCAATCGTTTCAGAGCTGATTGCGGCTCGTGCT
CTGAAGAGATCGTGGAAGAGGTTGCCACCCACTGCAAGACCTTCTATATCCGTGCCAACCGCTGTAGTTCGCTCTACAATGACCTCTTCGCTCTCAGAGG
CTGGAAGAGGGGAGAAATCAACGGCATTGAGTTTGAGCTGAATTCCATTCTTGTAGAGAAGTGGAAAGGCAAGACATACCGGCTTGTGATTCAAAGGCGG
AAACGGATGGACGGTGAGCTTGACCTCTGGGAAGGAGAATACACATACCGCTGCATCCTGACCAACGACTACGAGCCTTCCGTAAGAGAGATTGTCGAGT
TCTATAACCTCCGCGGAGGAAAGGAGCGCATCTTCGATGACATGAACAATGGTTTCGGATGGTCCAGATTGCCCAAATCCTTCATGGCAGAGAACACAGT
GTTCCTTCTTCTTACAGCACTTATCCGTAACTTCTACAAGGTCATTATCCAAAGACTTGACGTAAAGAGGTTCGGACCCAATAAAACAAGTCGCATAAAA
GCGTTTGTCTTCAGATTTGTCTCTGTACCAGCCAAATGGATCAGAACATCAAGGTGGTATGTGCTGAATATCTATACCTGTAATAATGCTTACGCAGATG
TATTCCAGACTGATTTTGGATGACGACTACAACTTATGGGTATGATACTGCGTATTGTCTCAAGTCGCATTGTGGGGTAAGGGGGTATTGTAGGCAGAAG
TGGGTATTTCAGCCTCAATTTATCTAATAATTCAGTAATGAGAGAACGTGTACACGTAAATAGGACGATGAAGGACTTAGTTGCGGATTTGAGG
TGTTGCAAATCAAAATATGTATCAAACCCGACAGACATGGCAAAGAAAGCAATAAAATCTGAGAAACTCACTCCTTTTGGAGGAATATTTGCAATGATGG
AGCAATTTGACTCCACATTGTCATATGTAATTGACACAACCCTCGGTCTAAGATGCAGGCTGTATGGTTATCAATACAGCGAAATCATCCGTTCTCTCAT
GAGCATCTACTTCTGTGGCGGCTCATGTATTGAGGATGTCACAACTCATTTGATGCCCCATCTCTCGCTTCATCCGACACTTCGTACCTGCAGCTCTGAC
ACTATCCTCAGAGCGATAAAGGAACTGACGCAGGAGAACATTTCATACACGTCAGATACGGGTAAGAACTACGATTTCAATACGGCTGACACCCTCAATA
CCTTACTGCTCAATTGTATGTGTGCAGCTGGTCAGCTGAAAGAGGGTGAGATGTATGATGTTGATTTCGACCACCAGTTCATAGAAACAGAGAAATATGA
TGCAAAGCATACATACAAGAAGTTCCTTGGTTATCGACCAGGTGTGGCGGTTATTGGAGATTTGATTGTCGGCATTGAGAACAGCGACGGCAACACAAAC
GTCCGTTTCCATCAGAAGGACACGCTGAAGAGATTCTTCGAAAGGTTTGAACAGAACAATCTTGTTATCAATCGTTTCAGAGCTGATTGCGGCTCGTGCT
CTGAAGAGATCGTGGAAGAGGTTGCCACCCACTGCAAGACCTTCTATATCCGTGCCAACCGCTGTAGTTCGCTCTACAATGACCTCTTCGCTCTCAGAGG
CTGGAAGAGGGGAGAAATCAACGGCATTGAGTTTGAGCTGAATTCCATTCTTGTAGAGAAGTGGAAAGGCAAGACATACCGGCTTGTGATTCAAAGGCGG
AAACGGATGGACGGTGAGCTTGACCTCTGGGAAGGAGAATACACATACCGCTGCATCCTGACCAACGACTACGAGCCTTCCGTAAGAGAGATTGTCGAGT
TCTATAACCTCCGCGGAGGAAAGGAGCGCATCTTCGATGACATGAACAATGGTTTCGGATGGTCCAGATTGCCCAAATCCTTCATGGCAGAGAACACAGT
GTTCCTTCTTCTTACAGCACTTATCCGTAACTTCTACAAGGTCATTATCCAAAGACTTGACGTAAAGAGGTTCGGACCCAATAAAACAAGTCGCATAAAA
GCGTTTGTCTTCAGATTTGTCTCTGTACCAGCCAAATGGATCAGAACATCAAGGTGGTATGTGCTGAATATCTATACCTGTAATAATGCTTACGCAGATG
TATTCCAGACTGATTTTGGATGACGACTACAACTTATGGGTATGATACTGCGTATTGTCTCAAGTCGCATTGTGGGGTAAGGGGGTATTGTAGGCAGAAG
TGGGTATTTCAGCCTCAATTTATCTAATAATTCAGTAATGAGAGAACGTGTACACGTAAATAGGACGATGAAGGACTTAGTTGCGGATTTGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 194 | 1423 | + | No |
Chemistry : DDE
ORF sequence :
MMEQFDSTLSYVIDTTLGLRCRLYGYQYSEIIRSLMSIYFCGGSCIEDVTTHLMPHLSLHPTLRTCSSDTILRAIKELTQENISYTSDTGKNYDFNTADT
LNTLLLNCMCAAGQLKEGEMYDVDFDHQFIETEKYDAKHTYKKFLGYRPGVAVIGDLIVGIENSDGNTNVRFHQKDTLKRFFERFEQNNLVINRFRADCG
SCSEEIVEEVATHCKTFYIRANRCSSLYNDLFALRGWKRGEINGIEFELNSILVEKWKGKTYRLVIQRRKRMDGELDLWEGEYTYRCILTNDYEPSVREI
VEFYNLRGGKERIFDDMNNGFGWSRLPKSFMAENTVFLLLTALIRNFYKVIIQRLDVKRFGPNKTSRIKAFVFRFVSVPAKWIRTSRWYVLNIYTCNNAY
ADVFQTDFG
LNTLLLNCMCAAGQLKEGEMYDVDFDHQFIETEKYDAKHTYKKFLGYRPGVAVIGDLIVGIENSDGNTNVRFHQKDTLKRFFERFEQNNLVINRFRADCG
SCSEEIVEEVATHCKTFYIRANRCSSLYNDLFALRGWKRGEINGIEFELNSILVEKWKGKTYRLVIQRRKRMDGELDLWEGEYTYRCILTNDYEPSVREI
VEFYNLRGGKERIFDDMNNGFGWSRLPKSFMAENTVFLLLTALIRNFYKVIIQRLDVKRFGPNKTSRIKAFVFRFVSVPAKWIRTSRWYVLNIYTCNNAY
ADVFQTDFG
Blast result :
Comments
ISBaov1 is 86% aa similar to IS942. ISBaov1 was found inserted in conjugative transposon CTnGERM1.
References
1] Wang,Y., Wang,G.R., Shelby,A., Shoemaker,N.B. and Salyers,A.A.(2003) Appl. Environ. Microbiol. 69 (8), 4595-4603