ISC1190

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1180 bp

Ends


Left end : ATATAAAACATATTAGTCAGATCTGCGTATTACAGATCTGACTGGGGTTGAGGCCGTTGATCTCCTTGGGCTTAGAGCTCGAGAGGGAGCTTGGCCTCCT
Right end : TAATAAGCCCTTTGATGCTAGCGAGTAAAGCAGGTGACATCACTTGAATAAGTAGTGTGTACTATGCTCGATTTTCACGGAAAGGTTTTTATACCGGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTCTTGTGGCTTATCTCCTTCGTTAGGTTCAGTA6

DNA sequence

ATATAAAACATATTAGTCAGATCTGCGTATTACAGATCTGACTGGGGTTGAGGCCGTTGATCTCCTTGGGCTTAGAGCTCGAGAGGGAGCTTGGCCTCCT
CCAATTCGGACCGGAAGTTGGGCTTGAAGCCCGAATAAAACATAAGGGTGAGTATACATGGAGGCCCCAGTCGCCGGAATAGATGTTTCAAAAGATAAAT
TAGTAGTGTACTTCCAAGGTAAATACTATGAATTTCAAAATAATAAGCAAGGTTTTGAAGGAGTAAAGCAAGTCTTGCCAAAGGGTTGTAAAGTTGCTAT
AGAAAGTACTGGAATTTACCACATCAACTTGGCTAAGTACTTGGGTAAGGAGTACGACGTGAGGATTATTAATCCCCTCATACTCAAGAAGTTCAAGGAC
ATTAGGGGTAAGAAGAGTGATAAGAATGACGCTAAAAAGCTCGCTGAACTAGTTATAAGTATGGGCAGTGAGTTTACAACGAGTGAGGCTAAGGAGTTAA
CAAGCCAATGGGATTTTATCACAAGGAGCATTGTTAGGGTTAAGAATAGGCTAAGGAGAGATTTAATACTTCTAGGCTATAAGGACAGTTTGTCCAAGAA
GAACTTGAATGAGGTATTGAGGGGGGAGGATAATATAGTATTATCTGAGGTTAGGTTCCTCTTGGATGAGTTGGAGAGGCTTGAGGTTAGGAAGAGGGAG
ATTGAGGAAGAGCTTGAGGATCTTGTTCCTAAGGATAGTTTGATCTTCACGATTCCGGGTATTGGCAGAACGTTGGGTTGTATAATTTTAGCAAGGGTTG
GTGATGTTAAGCGTTTTGGTGACAAGAAGAGGTTTGTCGCTTATTGTGGTCTCGATCCTCTTGTTGAATCCAGTGGGAAGAGTGTTGTATCGAGAGGCAT
ATCTAGGAGGGGTGATGCTGTTTTGAGGAGGGCTTTCTATCTTGCAGCTTTAACTGCTATCAAGGTTAATCCTATTATTAAGCGGTTTTATGAGGAGCAC
AAGGGGAATTTGAAGGGTAAAAAGTTGATTACTGCTTGTGCCAGGAAGCTTGCTGTTATTACTTGGGCTGTGCTGTATTATAATAAGCCCTTTGATGCTA
GCGAGTAAAGCAGGTGACATCACTTGAATAAGTAGTGTGTACTATGCTCGATTTTCACGGAAAGGTTTTTATACCGGAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa1581108+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MEAPVAGIDVSKDKLVVYFQGKYYEFQNNKQGFEGVKQVLPKGCKVAIESTGIYHINLAKYLGKEYDVRIINPLILKKFKDIRGKKSDKNDAKKLAELVI
SMGSEFTTSEAKELTSQWDFITRSIVRVKNRLRRDLILLGYKDSLSKKNLNEVLRGEDNIVLSEVRFLLDELERLEVRKREIEEELEDLVPKDSLIFTIP
GIGRTLGCIILARVGDVKRFGDKKRFVAYCGLDPLVESSGKSVVSRGISRRGDAVLRRAFYLAALTAIKVNPIIKRFYEEHKGNLKGKKLITACARKLAV
ITWAVLYYNKPFDASE

 

Blast result :
Comments
ISC1190 is 47% aa similar to ISNgo2.
References
1] She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ et al. (2001) Proc Natl Acad Sci U S A. 98(14):7835-40