ISTvo2
- Family ISNCY
- Group ISA1214
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002689 | ND | Thermoplasma volcanium | Thermoplasma volcanium GSS1 |
DNA section
IS Length : 1201 bp
Ends
IR Length : 14/18
IRL : GGACAAAAATAGTCATTCATCTCCCTCATCATCTTTCTTGATGATCAGAC
IRR : GGGACATAATTAGTCTTATCCATTCATGAACATCAGGTTGTGCCAGAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGTCTGATCGACTCTA | AGAGTCGGGAATGTA | 0 |
DNA sequence
GGACAAAAATAGTCATTCATCTCCCTCATCATCTTTCTTGATGATCAGACACACCCTCTTTCCCAGATATTCCTTAGGACAATCAACTTTGGCACCGGAT
CCAAACTTTGTAACAGTACGTTCCATGTAAGCCTCTATGTTGTGCGCTGTGATCTCGTTTGCCTCCTTCACCTTAACCTTCTTTACAAATGTATATATAC
AGTATATATTATACTTTGTCATTCAACAATCCATGTATGAGGAATTCAGGGATAACATAAACTCCCTCATTGAGGAGTACAGGGAGAAGTTATCCATTCC
TCATGTCATGGACTGAAAGGAGTACGAGAAAAAATACAGATCCAGGCTGACCGCAGCCTCCAGGGAACTGCGATCACTGTTGCTGGAGGCATCATCCCGT
ATACGGGAGGATGAATTTGGTAGACCGTCAGTCATACATGAAGTTGACAGGGCACAGATCATACTGTCAAAAGAGATGTTCGACCTGAGCAACCGCAAGG
CTGCCTATCTCATGCCCCTCATGGGCATGGAATATGAGGTGTCCTATAAAACAGTCGAAAGGATCTATTCAGATGATGTTGTGCCAATGATAATGCACAA
CCACTTCGTACTCTCAGTGAAAAAGAGGGGCATTGATATATCGAACGCATGCAGGGACAGAACCGGTTATTCGCTGACAGTTTCAGACCACCACAGATCT
GTGAGGGAGAAGCTGGGAGAATCTGTGAAGCATGGAAAATACAGGTATTCATTTGCCATCATGGATCTGAAGACACGCATGTACATAGGATACGCATCCT
TTGTGAGATCGGAGAGTGATGCTTACCAGAAAGCTTCGAGGATTATCTCTGACCTCGGGATACAGATAAATTCAGTGAGGCTTAACAAGTAATATTCAGG
GCAGAGCATACTGGGTGATTTCTCAGATAACACAAGGATATTCATCATTCCAAAGAAGAATTCACGCATTCACGGTAAAAAAAGATGGAGGGACATAATT
GCCTCATTCATGAGCGATCCCATGGAGTTCCTCAAGGAATACTTCAAACGCAACAACTCTGAGGCAGGTTTCTCCTCAGACAAGCGAGCCACAGGACGGA
GGATATTCCAAAGGCGCAACGACAGGATTGAGACATCGATATTCATAAAGGGACTCTGGCACAACCTGATGTTCATGAATGGATAAGACTAATTATGTCC
C
CCAAACTTTGTAACAGTACGTTCCATGTAAGCCTCTATGTTGTGCGCTGTGATCTCGTTTGCCTCCTTCACCTTAACCTTCTTTACAAATGTATATATAC
AGTATATATTATACTTTGTCATTCAACAATCCATGTATGAGGAATTCAGGGATAACATAAACTCCCTCATTGAGGAGTACAGGGAGAAGTTATCCATTCC
TCATGTCATGGACTGAAAGGAGTACGAGAAAAAATACAGATCCAGGCTGACCGCAGCCTCCAGGGAACTGCGATCACTGTTGCTGGAGGCATCATCCCGT
ATACGGGAGGATGAATTTGGTAGACCGTCAGTCATACATGAAGTTGACAGGGCACAGATCATACTGTCAAAAGAGATGTTCGACCTGAGCAACCGCAAGG
CTGCCTATCTCATGCCCCTCATGGGCATGGAATATGAGGTGTCCTATAAAACAGTCGAAAGGATCTATTCAGATGATGTTGTGCCAATGATAATGCACAA
CCACTTCGTACTCTCAGTGAAAAAGAGGGGCATTGATATATCGAACGCATGCAGGGACAGAACCGGTTATTCGCTGACAGTTTCAGACCACCACAGATCT
GTGAGGGAGAAGCTGGGAGAATCTGTGAAGCATGGAAAATACAGGTATTCATTTGCCATCATGGATCTGAAGACACGCATGTACATAGGATACGCATCCT
TTGTGAGATCGGAGAGTGATGCTTACCAGAAAGCTTCGAGGATTATCTCTGACCTCGGGATACAGATAAATTCAGTGAGGCTTAACAAGTAATATTCAGG
GCAGAGCATACTGGGTGATTTCTCAGATAACACAAGGATATTCATCATTCCAAAGAAGAATTCACGCATTCACGGTAAAAAAAGATGGAGGGACATAATT
GCCTCATTCATGAGCGATCCCATGGAGTTCCTCAAGGAATACTTCAAACGCAACAACTCTGAGGCAGGTTTCTCCTCAGACAAGCGAGCCACAGGACGGA
GGATATTCCAAAGGCGCAACGACAGGATTGAGACATCGATATTCATAAAGGGACTCTGGCACAACCTGATGTTCATGAATGGATAAGACTAATTATGTCC
C
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
210 bp | 69 aa | 13 | 222 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MTKYNIYCIYTFVKKVKVKEANEITAHNIEAYMERTVTKFGSGAKVDCPKEYLGKRVCLIIKKDDEGDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
950 bp | 349 aa | 137 | 1086 | + | No |
Chemistry : Unknow
ORF sequence :
MLCAVISFASFTLTFFTNVYIQYILYFVIQQSMYEEFRDNINSLIEEYREKLSIPHVMD*KEYEKKYRSRLTAASRELRSLLLEASSRIREDEFGRPSVI
HEVDRAQIILSKEMFDLSNRKAAYLMPLMGMEYEVSYKTVERIYSDDVVPMIMHNHFVLSVKKRGIDISNACRDRTGYSLTVSDHHRSVREKLGESVKHG
KYRYSFAIMDLKTRMYIGYASFVRSESDAYQKASRIISDLGIQINSVRLNK*YSGQSILGDFSDNTRIFIIPKKNSRIHGKKRWRDIIASFMSDPMEFLK
EYFKRNNSEAGFSSDKRATGRRIFQRRNDRIETSIFIKGLWHNLMFMNG
HEVDRAQIILSKEMFDLSNRKAAYLMPLMGMEYEVSYKTVERIYSDDVVPMIMHNHFVLSVKKRGIDISNACRDRTGYSLTVSDHHRSVREKLGESVKHG
KYRYSFAIMDLKTRMYIGYASFVRSESDAYQKASRIISDLGIQINSVRLNK*YSGQSILGDFSDNTRIFIIPKKNSRIHGKKRWRDIIASFMSDPMEFLK
EYFKRNNSEAGFSSDKRATGRRIFQRRNDRIETSIFIKGLWHNLMFMNG
Blast result :
Comments
ISTvo2 is 81% (ORF1) and 61% (ORF2) aa similar to ISA1214. We extended the transposase to the first methionine, so it is too long compared to the others members of this family.
The transposase is certainly inactive there are two STOP codon.
The transposase is certainly inactive there are two STOP codon.
References
1] Kawashima,T., Amano,N., Koike,H., Makino,S., Higuchi,S., Kawashima-Ohya,Y., Watanabe,K., Yamazaki,M., Kanehori,K., Kawamoto,T., Nunoshiba,T., Yamamoto,Y., Aramaki,H., Makino,K. and Suzuki,M.
(2000) Proc. Natl. Acad. Sci. U.S.A. 97 (26), 14257-14262
(2000) Proc. Natl. Acad. Sci. U.S.A. 97 (26), 14257-14262