ISMma12

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei
DNA section
IS Length : 875 bp

Ends


IR Length : 16/17

IRL : GAGCCTATCCGAAAAGTAGAATAACTGCGATATTGTGTAATGTTTATTAG
IRR : GTGCCTATCCGAAAAGTCCCGCTGCTCTAAATGTTATGCATGCACATGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GTGATCTTGAAGCCCATTTAGTCGCCCTTAGT3

DNA sequence

GAGCCTATCCGAAAAGTAGAATAACTGCGATATTGTGTAATGTTTATTAGTGACACGACGAAAAAACGGGCACGACTACGAGATTTCTGATAAATTGTGG
AATAAAATCAAACCTCTACTCCCACTCCCTAAACCGAAAAAGAAGCCTGGAAGACCTAGAAAGGATGATAGGAAAATAATGAGTGGTATTTTTTATGTAC
TCCTTACAGGTTGCCAATGGAAATTATTGCCACGATTTTATGGAGCCCCAAGTACCGTACATGATCGATTTCAGGAATGGCGAAAATCAAGCTTATTTGA
GAAAATGTGGAAAGCTGGTTTATTGGATTATGACAAAAATAAAGGATTAGAATGGGAATGGCAAGCAATTGATGGGGCCATGACAAAAGCACCATTGGGT
GGAGCTGGAACAGGAGCTAATCCTACTGACCGTGGTAAAAAAGGTACAAAAAGGAGTCTGTTAACAGATGGTAAAGGTATACCACTTTCGGTAACTGTAG
ATGGAGCTAATCGTCACGATAAAAAGCTTGTAAAAGGAACTCTTGATGCCATTATTTTTCAAAGACCTTCTCTAGATGAGGGAATTCAGAATATCTGTAT
GGATAAGGGATATGATTTTCCTGATATCAGAGAATTGGTTAAAGAATATGGATATATAGCACATATAAGAAGAAGGGGAGAAGAAAACATAAGAAAAAAA
GAGATACCAGGTTACAGAGCAAGAAGGTGGGTTGTGGAAAGGACACATTCCTGGCTCAATAGATTCAGAAGGCTGCTTATTAGATGGGAAAAAAAGATTG
AGAATTACTATGCGATGCTTCAGTTAGCATGTGCATGCATAACATTTAGAGCAGCGGGACTTTTCGGATAGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
822 bp273 aa50871+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTRRKNGHDYEISDKLWNKIKPLLPLPKPKKKPGRPRKDDRKIMSGIFYVLLTGCQWKLLPRFYGAPSTVHDRFQEWRKSSLFEKMWKAGLLDYDKNKGL
EWEWQAIDGAMTKAPLGGAGTGANPTDRGKKGTKRSLLTDGKGIPLSVTVDGANRHDKKLVKGTLDAIIFQRPSLDEGIQNICMDKGYDFPDIRELVKEY
GYIAHIRRRGEENIRKKEIPGYRARRWVVERTHSWLNRFRRLLIRWEKKIENYYAMLQLACACITFRAAGLFG

 

Blast result :
Comments
ISMma12 is 90% aa similar to ISMac11.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461