ISArch5
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY714859 | ND | Uncultured archaeon | Uncultured archaeon GZfos34A6 |
DNA section
IS Length : 1285 bp
Ends
IR Length : 19/26
IRL : GGTTCTCCATAAGATTGTGTGGGTAAGTTTAATTACGCCACTTATTATAT
IRR : GGTTCTCTTCAACCTGATGTGGGTAAACTCGGAGACAACTCCAATTTGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTCCATAAGATTGTGTGGGTAAGTTTAATTACGCCACTTATTATATGAGCATATGGATGTCAAAAAGCTTATGCAGATTACGCTGGGGGTACCATC
CCCCTGGTTCGTGAAAAGCGTTGAACTGAACACATCAGAAGAAAGGATAGATGTCTATTTCGATTTCATTAAAGGTAATGAGTTCGCTTGTCCGATTTGC
AATAAATCATGTAAAATACACGACACAAAAGATAGGTGTTGGAGACATCTGCCTCTATTCCATTATGAATCTTATATCCACGCTAGAGTTCCAAGGACGA
AATGCGAAGAGCATGGCACAAAAACCGTAGTCATTCCCTGGTCAAGATCGGATACATGATTCACATCGTTTTTCGAGGAGGATGTTGTTGCCCTCGGTAA
AGAAATGTCCGTTGCGTCAGTAGCAAGGAGAGTCAAGATTCATGAAGAATCCGCATGGAGAATTCTTGCCTATCACGTCAACGACGCAATAGCGCGTGTT
GATTTATCACAGCTCGATACGATTGGTGTAGACGAAATATCTGTTAAAAAAGGGCATAAGTACATTACTCTGTTTTACGACATTAAAAATGCGAAAGTGA
TTTATATAGCGATGGGGAAGGGCAAAAATACGATTAAAACGTTTAAAGATACAATTTCTAAGAAGATTAACCCCGAACAGATTAAATATGTCGCTATGGA
CATGTCTCCTGCATTTATAAGTGGTGCAAGCGAGTATTTTCCGACTGCAAAAATAGTTTTTGACAAATTTCACGTGATTCAGATGATGAATAATACCATC
GACGATGTAAGACGTAAAGAATACAAAACGAATAAAACACTCGCTAAAACTAGGTTTATCTGGCTGAAGAACCCTGAAAATTTGTCGGATAAAGAGAAAA
AGAAGCTGCATTCTATGAAAGATCTTGATATTAAAACTGCTAAGGCGTACCAATTCAAACTGGCTCTTCAGAGGTTATGGCGGGTACAAGACCTTATAGC
AGCACAAAATTATTTGAATGACTGGTATTATTGGGCTGCACACAGTAAGATTGAAGAAATCGTCAAACTTGCGGAGACCGTGCATAAGCATTCTTATGGG
ATTCTGGAAGCAATCAAGACAGGACTCGACAATAGTGTTGCTGAAGGATTGAACAACAAAGTCAAGACGGTCGTCAAAAGATCCTACGGATTTAAGACTG
CAAAATATAGAAATACAATGATTTATCTGGTGACGGGCAAATTGGAGTTGTCTCCGAGTTTACCCACATCAGGTTGAAGAGAACC
CCCCTGGTTCGTGAAAAGCGTTGAACTGAACACATCAGAAGAAAGGATAGATGTCTATTTCGATTTCATTAAAGGTAATGAGTTCGCTTGTCCGATTTGC
AATAAATCATGTAAAATACACGACACAAAAGATAGGTGTTGGAGACATCTGCCTCTATTCCATTATGAATCTTATATCCACGCTAGAGTTCCAAGGACGA
AATGCGAAGAGCATGGCACAAAAACCGTAGTCATTCCCTGGTCAAGATCGGATACATGATTCACATCGTTTTTCGAGGAGGATGTTGTTGCCCTCGGTAA
AGAAATGTCCGTTGCGTCAGTAGCAAGGAGAGTCAAGATTCATGAAGAATCCGCATGGAGAATTCTTGCCTATCACGTCAACGACGCAATAGCGCGTGTT
GATTTATCACAGCTCGATACGATTGGTGTAGACGAAATATCTGTTAAAAAAGGGCATAAGTACATTACTCTGTTTTACGACATTAAAAATGCGAAAGTGA
TTTATATAGCGATGGGGAAGGGCAAAAATACGATTAAAACGTTTAAAGATACAATTTCTAAGAAGATTAACCCCGAACAGATTAAATATGTCGCTATGGA
CATGTCTCCTGCATTTATAAGTGGTGCAAGCGAGTATTTTCCGACTGCAAAAATAGTTTTTGACAAATTTCACGTGATTCAGATGATGAATAATACCATC
GACGATGTAAGACGTAAAGAATACAAAACGAATAAAACACTCGCTAAAACTAGGTTTATCTGGCTGAAGAACCCTGAAAATTTGTCGGATAAAGAGAAAA
AGAAGCTGCATTCTATGAAAGATCTTGATATTAAAACTGCTAAGGCGTACCAATTCAAACTGGCTCTTCAGAGGTTATGGCGGGTACAAGACCTTATAGC
AGCACAAAATTATTTGAATGACTGGTATTATTGGGCTGCACACAGTAAGATTGAAGAAATCGTCAAACTTGCGGAGACCGTGCATAAGCATTCTTATGGG
ATTCTGGAAGCAATCAAGACAGGACTCGACAATAGTGTTGCTGAAGGATTGAACAACAAAGTCAAGACGGTCGTCAAAAGATCCTACGGATTTAAGACTG
CAAAATATAGAAATACAATGATTTATCTGGTGACGGGCAAATTGGAGTTGTCTCCGAGTTTACCCACATCAGGTTGAAGAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 57 | 1277 | + | No |
Chemistry : Unknow
ORF sequence :
MDVKKLMQITLGVPSPWFVKSVELNTSEERIDVYFDFIKGNEFACPICNKSCKIHDTKDRCWRHLPLFHYESYIHARVPRTKCEEHGTKTVVIPWSRSDT
*FTSFFEEDVVALGKEMSVASVARRVKIHEESAWRILAYHVNDAIARVDLSQLDTIGVDEISVKKGHKYITLFYDIKNAKVIYIAMGKGKNTIKTFKDTI
SKKINPEQIKYVAMDMSPAFISGASEYFPTAKIVFDKFHVIQMMNNTIDDVRRKEYKTNKTLAKTRFIWLKNPENLSDKEKKKLHSMKDLDIKTAKAYQF
KLALQRLWRVQDLIAAQNYLNDWYYWAAHSKIEEIVKLAETVHKHSYGILEAIKTGLDNSVAEGLNNKVKTVVKRSYGFKTAKYRNTMIYLVTGKLELSP
SLPTSG
*FTSFFEEDVVALGKEMSVASVARRVKIHEESAWRILAYHVNDAIARVDLSQLDTIGVDEISVKKGHKYITLFYDIKNAKVIYIAMGKGKNTIKTFKDTI
SKKINPEQIKYVAMDMSPAFISGASEYFPTAKIVFDKFHVIQMMNNTIDDVRRKEYKTNKTLAKTRFIWLKNPENLSDKEKKKLHSMKDLDIKTAKAYQF
KLALQRLWRVQDLIAAQNYLNDWYYWAAHSKIEEIVKLAETVHKHSYGILEAIKTGLDNSVAEGLNNKVKTVVKRSYGFKTAKYRNTMIYLVTGKLELSP
SLPTSG
Blast result :
Comments
ISArch5 is 61% aa similar to ISTfe1. There is a codon STOP at position 101 of the transposase.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462