ISArch5

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714859 ND Uncultured archaeon
Uncultured archaeon GZfos34A6
DNA section
IS Length : 1285 bp

Ends


IR Length : 19/26

IRL : GGTTCTCCATAAGATTGTGTGGGTAAGTTTAATTACGCCACTTATTATAT
IRR : GGTTCTCTTCAACCTGATGTGGGTAAACTCGGAGACAACTCCAATTTGCC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTTCTCCATAAGATTGTGTGGGTAAGTTTAATTACGCCACTTATTATATGAGCATATGGATGTCAAAAAGCTTATGCAGATTACGCTGGGGGTACCATC
CCCCTGGTTCGTGAAAAGCGTTGAACTGAACACATCAGAAGAAAGGATAGATGTCTATTTCGATTTCATTAAAGGTAATGAGTTCGCTTGTCCGATTTGC
AATAAATCATGTAAAATACACGACACAAAAGATAGGTGTTGGAGACATCTGCCTCTATTCCATTATGAATCTTATATCCACGCTAGAGTTCCAAGGACGA
AATGCGAAGAGCATGGCACAAAAACCGTAGTCATTCCCTGGTCAAGATCGGATACATGATTCACATCGTTTTTCGAGGAGGATGTTGTTGCCCTCGGTAA
AGAAATGTCCGTTGCGTCAGTAGCAAGGAGAGTCAAGATTCATGAAGAATCCGCATGGAGAATTCTTGCCTATCACGTCAACGACGCAATAGCGCGTGTT
GATTTATCACAGCTCGATACGATTGGTGTAGACGAAATATCTGTTAAAAAAGGGCATAAGTACATTACTCTGTTTTACGACATTAAAAATGCGAAAGTGA
TTTATATAGCGATGGGGAAGGGCAAAAATACGATTAAAACGTTTAAAGATACAATTTCTAAGAAGATTAACCCCGAACAGATTAAATATGTCGCTATGGA
CATGTCTCCTGCATTTATAAGTGGTGCAAGCGAGTATTTTCCGACTGCAAAAATAGTTTTTGACAAATTTCACGTGATTCAGATGATGAATAATACCATC
GACGATGTAAGACGTAAAGAATACAAAACGAATAAAACACTCGCTAAAACTAGGTTTATCTGGCTGAAGAACCCTGAAAATTTGTCGGATAAAGAGAAAA
AGAAGCTGCATTCTATGAAAGATCTTGATATTAAAACTGCTAAGGCGTACCAATTCAAACTGGCTCTTCAGAGGTTATGGCGGGTACAAGACCTTATAGC
AGCACAAAATTATTTGAATGACTGGTATTATTGGGCTGCACACAGTAAGATTGAAGAAATCGTCAAACTTGCGGAGACCGTGCATAAGCATTCTTATGGG
ATTCTGGAAGCAATCAAGACAGGACTCGACAATAGTGTTGCTGAAGGATTGAACAACAAAGTCAAGACGGTCGTCAAAAGATCCTACGGATTTAAGACTG
CAAAATATAGAAATACAATGATTTATCTGGTGACGGGCAAATTGGAGTTGTCTCCGAGTTTACCCACATCAGGTTGAAGAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa571277+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDVKKLMQITLGVPSPWFVKSVELNTSEERIDVYFDFIKGNEFACPICNKSCKIHDTKDRCWRHLPLFHYESYIHARVPRTKCEEHGTKTVVIPWSRSDT
*FTSFFEEDVVALGKEMSVASVARRVKIHEESAWRILAYHVNDAIARVDLSQLDTIGVDEISVKKGHKYITLFYDIKNAKVIYIAMGKGKNTIKTFKDTI
SKKINPEQIKYVAMDMSPAFISGASEYFPTAKIVFDKFHVIQMMNNTIDDVRRKEYKTNKTLAKTRFIWLKNPENLSDKEKKKLHSMKDLDIKTAKAYQF
KLALQRLWRVQDLIAAQNYLNDWYYWAAHSKIEEIVKLAETVHKHSYGILEAIKTGLDNSVAEGLNNKVKTVVKRSYGFKTAKYRNTMIYLVTGKLELSP
SLPTSG

 

Blast result :
Comments
ISArch5 is 61% aa similar to ISTfe1. There is a codon STOP at position 101 of the transposase.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462