ISH17
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_006393 | ND | Haloarcula marismortui | Halobacterium sp plasmid pNRC200 Haloarcula marismortui ATCC 43049 plasmid pNG500 Haloarcula marismortui ATCC 43049 plasmid pNG700 Haloarcula marismortui ATCC 43049 chromosome II Halobacterium sp |
DNA section
IS Length : 745 bp
Ends
IR Length : 14
IRL : GGCACTGTCTAGTTGAGCGAGTTTGAGAAGCGAGGAGGTCGTAGCGAGAA
IRR : GGCACTGTCTAGTTCTGAATCTCTTCAGCTGGCGTTTTTCCGTCAAGAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTGCGAGAGTTA | TCCCCGAG | AGAGGGTTCAACAAGGC | 8 |
DNA sequence
GGCACTGTCTAGTTGAGCGAGTTTGAGAAGCGAGGAGGTCGTAGCGAGAAGTGCCTATGCAACTCGCAGACCTCCTCAGAGAAACGTTAGATGAGGACAG
CCAAGACGTTTGGGAGAATGAGCGCACTCCGACACCCGTCCGGCGATTTGGGGTGCGTCTCCATACTGCGGGGCTGTCGATCAGGGAGACGGTTGCGATC
TTAGACTTGCTGGGTGTCGATCGTTCTCACGGCGCGGTCTGGAATTGGGTGCATACACTGTCTGAAGCACAGAGCGACCCGCCGACGGCGTCGCCGTCGC
GGGTCGCGGTCGATGAGAAACAAATCGAGATTGACGGCGAAAAGAAGTGGTTGTACGCCGCTGTCGATACCGAATCAAAGCTGCTGTTTGAAGTTGACGT
GTTCAGCCGCCGCGGGACTGACCCCGCGGCGGCGTTCCTGCATCGGCTCACTCAGAAACACGATGTCGCCGATTCAGTGTTTCTCGTTGATGCTGGCGGC
TATCTGACTGCCCTCTCACGTCACGATTTGAGCGGTCGGCTCGACTACCGAATCCGGAACCACATTGAAAAGTGGTTCCAGACTGTGACCATGCGCATCG
ACCGCTTTCACTCCTTCTGGAGGGGCAGTCAATCAAGCGCGAAACAGTGGTTACGACGATTCAGACACCACTACAACCACGAACGGCCGAACCAAGCTCT
TGACGGAAAAACGCCAGCTGAAGAGATTCAGAACTAGACAGTGCC
CCAAGACGTTTGGGAGAATGAGCGCACTCCGACACCCGTCCGGCGATTTGGGGTGCGTCTCCATACTGCGGGGCTGTCGATCAGGGAGACGGTTGCGATC
TTAGACTTGCTGGGTGTCGATCGTTCTCACGGCGCGGTCTGGAATTGGGTGCATACACTGTCTGAAGCACAGAGCGACCCGCCGACGGCGTCGCCGTCGC
GGGTCGCGGTCGATGAGAAACAAATCGAGATTGACGGCGAAAAGAAGTGGTTGTACGCCGCTGTCGATACCGAATCAAAGCTGCTGTTTGAAGTTGACGT
GTTCAGCCGCCGCGGGACTGACCCCGCGGCGGCGTTCCTGCATCGGCTCACTCAGAAACACGATGTCGCCGATTCAGTGTTTCTCGTTGATGCTGGCGGC
TATCTGACTGCCCTCTCACGTCACGATTTGAGCGGTCGGCTCGACTACCGAATCCGGAACCACATTGAAAAGTGGTTCCAGACTGTGACCATGCGCATCG
ACCGCTTTCACTCCTTCTGGAGGGGCAGTCAATCAAGCGCGAAACAGTGGTTACGACGATTCAGACACCACTACAACCACGAACGGCCGAACCAAGCTCT
TGACGGAAAAACGCCAGCTGAAGAGATTCAGAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 681 bp | 226 aa | 57 | 737 | + | No |
Chemistry : DDE
ORF sequence :
MQLADLLRETLDEDSQDVWENERTPTPVRRFGVRLHTAGLSIRETVAILDLLGVDRSHGAVWNWVHTLSEAQSDPPTASPSRVAVDEKQIEIDGEKKWLY
AAVDTESKLLFEVDVFSRRGTDPAAAFLHRLTQKHDVADSVFLVDAGGYLTALSRHDLSGRLDYRIRNHIEKWFQTVTMRIDRFHSFWRGSQSSAKQWLR
RFRHHYNHERPNQALDGKTPAEEIQN
AAVDTESKLLFEVDVFSRRGTDPAAAFLHRLTQKHDVADSVFLVDAGGYLTALSRHDLSGRLDYRIRNHIEKWFQTVTMRIDRFHSFWRGSQSSAKQWLR
RFRHHYNHERPNQALDGKTPAEEIQN
Blast result :
Comments
ISH17 is 56% aa similar to ISH15. There are 2 complete and 2 partial copies in Haloarcula marismortui ATCC 43049 plasmid pNG500, 1 complete copy in Haloarcula marismortui ATCC 43049 plasmid pNG700 and one complete and one partial copies in Haloarcula marismortui ATCC 43049 chromosome II and one partial copy in Halobacterium sp and one partial copy in pNRC200.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234