ISH29
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_002608 | ND | Halobacterium sp. | Halobacterium sp. NRC-1 plasmid pNRC200 |
DNA section
IS Length : 697 bp
Ends
IR Length : 16/17
IRL : GGCAGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGGTTTTCAGGTG
IRR : GGTAGTGTTCAGATAAGCTGATTCCATGCGAAGCTGAACGATCTGAGCCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CACTGGTTCCTGAGCG | GATAGGCC | CGCGAAAAAGCATTT | 8 |
DNA sequence
GGCAGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGGTTTTCAGGTGTCCATGCCGGAAAACGACCGCCTCAGCGGTTGTTTAGACCAGATCGACTT
AGAGTTTGTTGAACGAGAAGCGACACCGCAGCTGCTGATGAAGCTCAGTATTCAGCTCCATCTTGCTGGACTCTCACTTTCGAATACTGTCTCAATTCTT
GAGATATTCGGTGTCGAACGCGCACGTTCTACCGTTCATAACTGGGTTCACAAGGCCGACCTACAGCCCGAGTCTGGACGGAGTCCGGATCACGTCGCGG
TTGACGAAACCGTGATCCGACTCAATAACGAGCAGTACTGGCTGTATGCTGCTGTCAATCCAGAAACGAACGAATTACTCCATACAAAGCTTGAACCGAC
GCGTACGAACGTGATTGCTCGCTCGTTTTTCGCCAAACTCCGCGAGAAACACGACGTCGATACTGCCGTGTTTCTCGTTGATGGCGCACCCACGCTGAAA
GACGCCTGTCAACGACACGGCCTCCGATTCCAGTATGAAAAACACGGGAATCGGAATACTGTCGAACGTGTCTTTCGAGAGATAAAACGACGAACCTCCT
CGTTCTCAAACTGTTTCAGCAACGCCGCAGCAGATACTGCCGACGATTGGCTCAGATCGTTCAGCTTCGCATGGAATCAGCTTATCTGAACACTACC
AGAGTTTGTTGAACGAGAAGCGACACCGCAGCTGCTGATGAAGCTCAGTATTCAGCTCCATCTTGCTGGACTCTCACTTTCGAATACTGTCTCAATTCTT
GAGATATTCGGTGTCGAACGCGCACGTTCTACCGTTCATAACTGGGTTCACAAGGCCGACCTACAGCCCGAGTCTGGACGGAGTCCGGATCACGTCGCGG
TTGACGAAACCGTGATCCGACTCAATAACGAGCAGTACTGGCTGTATGCTGCTGTCAATCCAGAAACGAACGAATTACTCCATACAAAGCTTGAACCGAC
GCGTACGAACGTGATTGCTCGCTCGTTTTTCGCCAAACTCCGCGAGAAACACGACGTCGATACTGCCGTGTTTCTCGTTGATGGCGCACCCACGCTGAAA
GACGCCTGTCAACGACACGGCCTCCGATTCCAGTATGAAAAACACGGGAATCGGAATACTGTCGAACGTGTCTTTCGAGAGATAAAACGACGAACCTCCT
CGTTCTCAAACTGTTTCAGCAACGCCGCAGCAGATACTGCCGACGATTGGCTCAGATCGTTCAGCTTCGCATGGAATCAGCTTATCTGAACACTACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 636 bp | 211 aa | 54 | 689 | + | No |
Chemistry : DDE
ORF sequence :
MPENDRLSGCLDQIDLEFVEREATPQLLMKLSIQLHLAGLSLSNTVSILEIFGVERARSTVHNWVHKADLQPESGRSPDHVAVDETVIRLNNEQYWLYAA
VNPETNELLHTKLEPTRTNVIARSFFAKLREKHDVDTAVFLVDGAPTLKDACQRHGLRFQYEKHGNRNTVERVFREIKRRTSSFSNCFSNAAADTADDWL
RSFSFAWNQLI
VNPETNELLHTKLEPTRTNVIARSFFAKLREKHDVDTAVFLVDGAPTLKDACQRHGLRFQYEKHGNRNTVERVFREIKRRTSSFSNCFSNAAADTADDWL
RSFSFAWNQLI
Blast result :
Comments
ISH29 is 51% aa similar to ISPfu5.
There are 1 complete and 4 partial copies in Halobacterium sp. NRC-1 plasmid pNRC200 and 4 partial copies in Halobacterium sp. NRC-1 plasmid pNRC100.
There are 1 complete and 4 partial copies in Halobacterium sp. NRC-1 plasmid pNRC200 and 4 partial copies in Halobacterium sp. NRC-1 plasmid pNRC100.
References
1] Ng,W.V., Kennedy,S.P., Mahairas,G.G., Berquist,B., Pan,M., Shukla,H.D., Lasky,S.R., Baliga,N., Thorsson,V., Sbrogna,J., Swartzell,S., Weir,D., Hall,J., Dahl,T.A., Welti,R., Goo,Y.A., Leithauser,B., Keller,K., Cruz,R., Danson,M.J., Hough,D.W., Maddocks,D.G., Jablonski,P.E., Krebs,M.P., Angevine,C.M., Dale,H., Isenbarger,T.A., Peck,R.F., Pohlschrod,M., Spudich,J.L., Jung,K.-H., Alam,M., Freitas,T., Hou,S., Daniels,C.J., Dennis,P.P., Omer,A.D., Ebhardt,H., Lowe,T.M., Liang,P., Riley,M., Hood,L. and DasSarma,S. (2000) Proc. Natl. Acad. Sci. U.S.A. 97 (22), 12176-12181