ISSte1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005969 | ND | Sulfolobus tengchongensis | Sulfolobus tengchongensis plasmid pTC |
DNA section
IS Length : 746 bp
Ends
IR Length : 16
IRL : GTGTGTGTCCAACAATATTGCTAAATTAGACAAAATAATATTTAAGGGTC
IRR : GTGTGTGTCCAACAATTTATTTCTCCCTCCAAATTTCCAATAGATTGTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTTTACTCTT | ATCACAAA | CTGTAAAGAGTAGATGA | 8 |
DNA sequence
GTGTGTGTCCAACAATATTGCTAAATTAGACAAAATAATATTTAAGGGTCAGGACGGGTCTATCACGTGAGCAGACGTGAAGAGGAGCGTACCTCTTCCC
GTCCTGACCCAGGTAATGATCTACCTTCTCCAACTTAATAACCTTAAGCCCCGGTTCTGGTCCCTTCAGGAGTTGGCGGAAGCGTTAGCTAGTTATTTCC
TTGGACTATCCCTCAGGAGGTTCAGGGTCCCGAGGAGCACGGTTCACTATTATTGGAGAAGAGCGACGAGGACGACGCTCGACCTCCCCTTGACCGGGGA
GTACGCGGTGGACGAGACGAAGGTACTTCTGGTGAAGGGGGTGATGTACTACCTGTGGGTCGTGAGGGACGTCAACACGGGAGTTATCCCGTTCTTCATG
ATCACGAAGGCCAGGTCGGGCCTCGACGTGATTATCCTCGTGAAGCGAGTGAGGCAGGTGGAGATAAGGACGAGAGGAGAGTTCCTGAGGGCCAAGTACA
TACACGACGGCCTCCCCGCGTACAACTTCCTCTCGATAGCGGGGGTCGACCACGAGCACGTCACCTTCGGGATTAGGAACAGGGTTGAGCAGGTGTTTAG
AACCGCGAAGCATAGGCTCTCGACCATGGACTTCCACTTCCCGTGGAACGCGAGCAAGAGAAGCCTTGAATCCTGGTTCTCGGCCTTCTTCACGGTCTAC
AATCTATTGGAAATTTGGAGGGAGAAATAAATTGTTGGACACACAC
GTCCTGACCCAGGTAATGATCTACCTTCTCCAACTTAATAACCTTAAGCCCCGGTTCTGGTCCCTTCAGGAGTTGGCGGAAGCGTTAGCTAGTTATTTCC
TTGGACTATCCCTCAGGAGGTTCAGGGTCCCGAGGAGCACGGTTCACTATTATTGGAGAAGAGCGACGAGGACGACGCTCGACCTCCCCTTGACCGGGGA
GTACGCGGTGGACGAGACGAAGGTACTTCTGGTGAAGGGGGTGATGTACTACCTGTGGGTCGTGAGGGACGTCAACACGGGAGTTATCCCGTTCTTCATG
ATCACGAAGGCCAGGTCGGGCCTCGACGTGATTATCCTCGTGAAGCGAGTGAGGCAGGTGGAGATAAGGACGAGAGGAGAGTTCCTGAGGGCCAAGTACA
TACACGACGGCCTCCCCGCGTACAACTTCCTCTCGATAGCGGGGGTCGACCACGAGCACGTCACCTTCGGGATTAGGAACAGGGTTGAGCAGGTGTTTAG
AACCGCGAAGCATAGGCTCTCGACCATGGACTTCCACTTCCCGTGGAACGCGAGCAAGAGAAGCCTTGAATCCTGGTTCTCGGCCTTCTTCACGGTCTAC
AATCTATTGGAAATTTGGAGGGAGAAATAAATTGTTGGACACACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
654 bp | 217 aa | 77 | 730 | + | No |
Chemistry : DDE
ORF sequence :
MKRSVPLPVLTQVMIYLLQLNNLKPRFWSLQELAEALASYFLGLSLRRFRVPRSTVHYYWRRATRTTLDLPLTGEYAVDETKVLLVKGVMYYLWVVRDVN
TGVIPFFMITKARSGLDVIILVKRVRQVEIRTRGEFLRAKYIHDGLPAYNFLSIAGVDHEHVTFGIRNRVEQVFRTAKHRLSTMDFHFPWNASKRSLESW
FSAFFTVYNLLEIWREK
TGVIPFFMITKARSGLDVIILVKRVRQVEIRTRGEFLRAKYIHDGLPAYNFLSIAGVDHEHVTFGIRNRVEQVFRTAKHRLSTMDFHFPWNASKRSLESW
FSAFFTVYNLLEIWREK
Blast result :
Comments
ISSte1 is 68% aa similar to ISSto2.
References
1] Xiang,X. and Huang,L. (2004) Direct submission GenBank