ISSte1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005969 ND Sulfolobus tengchongensis
Sulfolobus tengchongensis plasmid pTC
DNA section
IS Length : 746 bp

Ends


IR Length : 16

IRL : GTGTGTGTCCAACAATATTGCTAAATTAGACAAAATAATATTTAAGGGTC
IRR : GTGTGTGTCCAACAATTTATTTCTCCCTCCAAATTTCCAATAGATTGTAG

Insertion site


Left flankDirect repeatRight flankDR Length
AGTTTACTCTTATCACAAACTGTAAAGAGTAGATGA8

DNA sequence

GTGTGTGTCCAACAATATTGCTAAATTAGACAAAATAATATTTAAGGGTCAGGACGGGTCTATCACGTGAGCAGACGTGAAGAGGAGCGTACCTCTTCCC
GTCCTGACCCAGGTAATGATCTACCTTCTCCAACTTAATAACCTTAAGCCCCGGTTCTGGTCCCTTCAGGAGTTGGCGGAAGCGTTAGCTAGTTATTTCC
TTGGACTATCCCTCAGGAGGTTCAGGGTCCCGAGGAGCACGGTTCACTATTATTGGAGAAGAGCGACGAGGACGACGCTCGACCTCCCCTTGACCGGGGA
GTACGCGGTGGACGAGACGAAGGTACTTCTGGTGAAGGGGGTGATGTACTACCTGTGGGTCGTGAGGGACGTCAACACGGGAGTTATCCCGTTCTTCATG
ATCACGAAGGCCAGGTCGGGCCTCGACGTGATTATCCTCGTGAAGCGAGTGAGGCAGGTGGAGATAAGGACGAGAGGAGAGTTCCTGAGGGCCAAGTACA
TACACGACGGCCTCCCCGCGTACAACTTCCTCTCGATAGCGGGGGTCGACCACGAGCACGTCACCTTCGGGATTAGGAACAGGGTTGAGCAGGTGTTTAG
AACCGCGAAGCATAGGCTCTCGACCATGGACTTCCACTTCCCGTGGAACGCGAGCAAGAGAAGCCTTGAATCCTGGTTCTCGGCCTTCTTCACGGTCTAC
AATCTATTGGAAATTTGGAGGGAGAAATAAATTGTTGGACACACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
654 bp217 aa77730+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRSVPLPVLTQVMIYLLQLNNLKPRFWSLQELAEALASYFLGLSLRRFRVPRSTVHYYWRRATRTTLDLPLTGEYAVDETKVLLVKGVMYYLWVVRDVN
TGVIPFFMITKARSGLDVIILVKRVRQVEIRTRGEFLRAKYIHDGLPAYNFLSIAGVDHEHVTFGIRNRVEQVFRTAKHRLSTMDFHFPWNASKRSLESW
FSAFFTVYNLLEIWREK

 

Blast result :
Comments
ISSte1 is 68% aa similar to ISSto2.
References
1] Xiang,X. and Huang,L. (2004) Direct submission GenBank