ISC1048

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1044 bp

Ends


IR Length : 18/22

IRL : GTGTTTCCGAAAAGTTTATAGATTAGTATTACCAGATTGAACTATGCAAG
IRR : GTATTTCCGGAAAGTTCTTAGACTTCAATTTTATCTAATCCTAGGTATGT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNTTAANNN2

DNA sequence

GTGTTTCCGAAAAGTTTATAGATTAGTATTACCAGATTGAACTATGCAAGATTTGGTTCAAGCTTATAAGGAAGAGAAGAACGCGAGAATTAAGGAGAGG
ATTCTTGCAGTGAAGCTGCACGTAGTTGATGGTAAATCGGAGAAAGAAGTTTCGAAAATGCTTAACAAGGGCTATTCCACGATAAAATTGTGGATTGGCA
AGTACAAGAAAGAAGGTCTTGATGGACTAAAGGACAAGCCCAGATCAGGAAGACCCAGAAAAGTAGAAGAGGAAAAGATAAAACAAATTCTGGAAGATAA
GCCCCAAAAATACGGAATACAACAAGAATATTGGACAATGAAAACACTCAAGATAGCACTACAAGAACAAGGAATAGAATACAAGAAATCCAGACTATAC
GAACTAGTCCACGAACTAGGATACAACCTAGTAAAACCCAGACCTACCAACATCCAAGCAGAAAAGGACAAGTGGGAAGATTTTAAAAAAATAAAGAAAT
TGGAAAGAAAGGCACTGTTCTTTCTAGACGAGTGTAGGACAGTAATTAGCACGTCAATTAAGAAGGTTCTAGCTAAGGTTGGCAGTAAGCCCGTAATGCG
CGTCAATATAGGTTTTTCCTCAATCTATGTTATTCTAGCTATAAACGCTTGGACCGGCGAAGTAGTGGTTTCTCTTGCTAAAAGGCCTAACTCTGAATCC
GTTAAGTATTTCTTGAGGTACTTTAAGAGGCGTGTGGGTAGTGGTAGGGTTTACATGGTCATGGATAATTACTCTCCTCACAAGACTAAGGGTACGCTTG
AGGTTTGTCGCAGGAAGGGTATTCATCCCGTGTTTACTCCTCCTTACTCGCCTGAGCTTAATATGGCTGAGGCGGTCTTCAAGTCCCTCAAGAACTACAT
GAGCAATAAAATATTCTATACGATAGAAGACGTTAAAAACTGTATTAAACAGTTCTTTGAAGAAAATAAGTATAGATTTAATCTTAATGCAATAACATAC
CTAGGATTAGATAAAATTGAAGTCTAAGAACTTTCCGGAAATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp327 aa441024+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQDLVQAYKEEKNARIKERILAVKLHVVDGKSEKEVSKMLNKGYSTIKLWIGKYKKEGLDGLKDKPRSGRPRKVEEEKIKQILEDKPQKYGIQQEYWTMK
TLKIALQEQGIEYKKSRLYELVHELGYNLVKPRPTNIQAEKDKWEDFKKIKKMERKALFFLDECRTVISTSIKKVLAKVGSKPVMRVNIGFSSIYVILAI
NAWTGEVVVSLAKRPNSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVCRRKGIHPVFTPPYSPELNMAEAVFKSLKNYMSNKIFYTIEDVKNC
IKQFFEENKYRFNLNAITYLGLDKIEV

 

Blast result :
Comments
There is 10 isoforms of this IS in the genome. ISC1048 is 45% aa similar to ISPpu2.
References
1] She,Q., Singh,R.K., Confalonieri,F. et al.(2001)Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840