ISC1048
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus P2 |
DNA section
IS Length : 1044 bp
Ends
IR Length : 18/22
IRL : GTGTTTCCGAAAAGTTTATAGATTAGTATTACCAGATTGAACTATGCAAG
IRR : GTATTTCCGGAAAGTTCTTAGACTTCAATTTTATCTAATCCTAGGTATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNT | TA | ANNN | 2 |
DNA sequence
GTGTTTCCGAAAAGTTTATAGATTAGTATTACCAGATTGAACTATGCAAGATTTGGTTCAAGCTTATAAGGAAGAGAAGAACGCGAGAATTAAGGAGAGG
ATTCTTGCAGTGAAGCTGCACGTAGTTGATGGTAAATCGGAGAAAGAAGTTTCGAAAATGCTTAACAAGGGCTATTCCACGATAAAATTGTGGATTGGCA
AGTACAAGAAAGAAGGTCTTGATGGACTAAAGGACAAGCCCAGATCAGGAAGACCCAGAAAAGTAGAAGAGGAAAAGATAAAACAAATTCTGGAAGATAA
GCCCCAAAAATACGGAATACAACAAGAATATTGGACAATGAAAACACTCAAGATAGCACTACAAGAACAAGGAATAGAATACAAGAAATCCAGACTATAC
GAACTAGTCCACGAACTAGGATACAACCTAGTAAAACCCAGACCTACCAACATCCAAGCAGAAAAGGACAAGTGGGAAGATTTTAAAAAAATAAAGAAAT
TGGAAAGAAAGGCACTGTTCTTTCTAGACGAGTGTAGGACAGTAATTAGCACGTCAATTAAGAAGGTTCTAGCTAAGGTTGGCAGTAAGCCCGTAATGCG
CGTCAATATAGGTTTTTCCTCAATCTATGTTATTCTAGCTATAAACGCTTGGACCGGCGAAGTAGTGGTTTCTCTTGCTAAAAGGCCTAACTCTGAATCC
GTTAAGTATTTCTTGAGGTACTTTAAGAGGCGTGTGGGTAGTGGTAGGGTTTACATGGTCATGGATAATTACTCTCCTCACAAGACTAAGGGTACGCTTG
AGGTTTGTCGCAGGAAGGGTATTCATCCCGTGTTTACTCCTCCTTACTCGCCTGAGCTTAATATGGCTGAGGCGGTCTTCAAGTCCCTCAAGAACTACAT
GAGCAATAAAATATTCTATACGATAGAAGACGTTAAAAACTGTATTAAACAGTTCTTTGAAGAAAATAAGTATAGATTTAATCTTAATGCAATAACATAC
CTAGGATTAGATAAAATTGAAGTCTAAGAACTTTCCGGAAATAC
ATTCTTGCAGTGAAGCTGCACGTAGTTGATGGTAAATCGGAGAAAGAAGTTTCGAAAATGCTTAACAAGGGCTATTCCACGATAAAATTGTGGATTGGCA
AGTACAAGAAAGAAGGTCTTGATGGACTAAAGGACAAGCCCAGATCAGGAAGACCCAGAAAAGTAGAAGAGGAAAAGATAAAACAAATTCTGGAAGATAA
GCCCCAAAAATACGGAATACAACAAGAATATTGGACAATGAAAACACTCAAGATAGCACTACAAGAACAAGGAATAGAATACAAGAAATCCAGACTATAC
GAACTAGTCCACGAACTAGGATACAACCTAGTAAAACCCAGACCTACCAACATCCAAGCAGAAAAGGACAAGTGGGAAGATTTTAAAAAAATAAAGAAAT
TGGAAAGAAAGGCACTGTTCTTTCTAGACGAGTGTAGGACAGTAATTAGCACGTCAATTAAGAAGGTTCTAGCTAAGGTTGGCAGTAAGCCCGTAATGCG
CGTCAATATAGGTTTTTCCTCAATCTATGTTATTCTAGCTATAAACGCTTGGACCGGCGAAGTAGTGGTTTCTCTTGCTAAAAGGCCTAACTCTGAATCC
GTTAAGTATTTCTTGAGGTACTTTAAGAGGCGTGTGGGTAGTGGTAGGGTTTACATGGTCATGGATAATTACTCTCCTCACAAGACTAAGGGTACGCTTG
AGGTTTGTCGCAGGAAGGGTATTCATCCCGTGTTTACTCCTCCTTACTCGCCTGAGCTTAATATGGCTGAGGCGGTCTTCAAGTCCCTCAAGAACTACAT
GAGCAATAAAATATTCTATACGATAGAAGACGTTAAAAACTGTATTAAACAGTTCTTTGAAGAAAATAAGTATAGATTTAATCTTAATGCAATAACATAC
CTAGGATTAGATAAAATTGAAGTCTAAGAACTTTCCGGAAATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 327 aa | 44 | 1024 | + | No |
Chemistry : DDE
ORF sequence :
MQDLVQAYKEEKNARIKERILAVKLHVVDGKSEKEVSKMLNKGYSTIKLWIGKYKKEGLDGLKDKPRSGRPRKVEEEKIKQILEDKPQKYGIQQEYWTMK
TLKIALQEQGIEYKKSRLYELVHELGYNLVKPRPTNIQAEKDKWEDFKKIKKMERKALFFLDECRTVISTSIKKVLAKVGSKPVMRVNIGFSSIYVILAI
NAWTGEVVVSLAKRPNSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVCRRKGIHPVFTPPYSPELNMAEAVFKSLKNYMSNKIFYTIEDVKNC
IKQFFEENKYRFNLNAITYLGLDKIEV
TLKIALQEQGIEYKKSRLYELVHELGYNLVKPRPTNIQAEKDKWEDFKKIKKMERKALFFLDECRTVISTSIKKVLAKVGSKPVMRVNIGFSSIYVILAI
NAWTGEVVVSLAKRPNSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVCRRKGIHPVFTPPYSPELNMAEAVFKSLKNYMSNKIFYTIEDVKNC
IKQFFEENKYRFNLNAITYLGLDKIEV
Blast result :
Comments
There is 10 isoforms of this IS in the genome. ISC1048 is 45% aa similar to ISPpu2.
References
1] She,Q., Singh,R.K., Confalonieri,F. et al.(2001)Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840