ISFsp4

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Frankia sp.
Frankia sp. EAN1pec
DNA section
IS Length : 1784 bp

Ends


Left end : CAGGAAAACGTAGCGCGCAACCCCCGTACTTCGGAGTGGGGTTAGCGGGTCGGGGCTGGTCGCCGTTGCTCCTCGATGTACTCGCGTACGAGTGCCAGTG II struct. : Yes
Right end : CTCCGGGCAGCTGGCTGTGAAACAGGAACCCACCGAGGTGCCGCGTGAACCCACGCCGCACGGCAGGAACCCCCAGCCTTCAAGCCAGGGAGGACGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCCCCCAGGAGTGCTCGTGCTGAGATGACCCGGCGATCGGCGAGCCTCAA

DNA sequence

CAGGAAAACGTAGCGCGCAACCCCCGTACTTCGGAGTGGGGTTAGCGGGTCGGGGCTGGTCGCCGTTGCTCCTCGATGTACTCGCGTACGAGTGCCAGTG
GGGCGTCTTCGGCCGAGACTGCGAGGTAGGACGGTGACCAGAAGTGGCCGCGTATGAGGTGCTGGTTGACCCGGTCGGTGAACTCGGTGCGCAGCCGTCG
GGCGGACACGCCTTTGAGGCTGTTCACCAGCGCGGAGACCGCGACCTTGGGTGGGTACTCGACCAGCAGGTGGACGTGATCGTCTTCTCCGTTGAACTCG
GTGAGGGCTGCGCCGAAGTCGCAGCACACGCTGCGCATGATCTGTTCGCAGCGGGTCAGCATCGCGTCGTCGAGTCCTCCACGCCGATACCTGGTCACGA
AGACCAAGTGGGCGTGCAGCGAGGAGACCACATGTCTGCCTCGCCTGTAGTCGTCTGCTTCCGTCATAGACCAAATATGCTGGATGGTGTGGCAGTCGTT
CGTTACCGCTACCGTGCCTACCCCGGGCCGGGGCAGGCACGGGCGTTGGCGCGGGCGTTCGGCTGCGCCCGGGGGTCGTGTTCAACGACGCGATCCGGGC
CCGCGACGAGGCGTACAAGGCCGGCGAGAAACTGTCGGACACCGAGGTTCAGCGCCGGGTGGTCACCCTCGCGAAACTCACCGACGAGCGAACCTGGCTG
TCCGAGGTGTCGTCGGTGGTACTCGTGCAGGCGTGCCAGGACGCACGCCGGGCGTTCCGGAACTGGTTCGACTCGCTGTCCGGGAAGCGGAAAGGCCGGC
AGGTCGGCCATCCGCGGTTCCGGTCACGGAAGGACAACCGGCAGTCGATCCGCCTCACCCGCAACGGCTTCACCGTCACGCCCCGAGGGGTGCGGGTGGC
GAAGGTCGGAGATCTGCGGCTGGCCTGGTCGCGTCCGCTGCCCTCGGTTCCGACGTCGGCGACGGTGATCCGGGAGGCGGACGGCAGGTACTACGTGTCG
TTCGTCGTCGACGTCGACGACGTCCCCTCCCCGGCGACAGGCGCCGAGATCGGCGTCGACCTCGGGTTGGACCGGCTCGCGACCCTGTCAACCGGACAGA
TCGTCGCGAACCCGCGTCCTCTGCGGTCGCGTCAGCGCAGGCTCGCCCGCGCACAGCGGGCACTGGCCCGCAAGCGGAAGGGTTCGGTGAACCGGCGCAA
GGCGGTCCGCCGGGTCGCGGTCGAACATCGGAAGGTACGGGACACCCGCCGGGATCATCATCACAAGCTCGCTGCTCGGCTGGTCCGCGACAACCAAGCG
GTCTACGTCGAGGATCTGGCGGTAGCCGGGCTGGCTCGTACGCGGCTGGCCCGGTCGGTGCACGACGCGGGCTGGTCGATGCTGGTCGGTCTGCTCGAGG
AGAAAGCGGCCCGGTGTGGCCGGGCCGTGGTGAGGGTGGGCCGGTTCTTCCCGTCGTCGCAGGTCTGCTCGGCCTGCGGCCACCGGGACGGCCCGAAGCC
TCTCCAGGTCCGGACGTGGACCTGTCCGGGGTGCGGTGTCAGCCACGACCGGGACCTGAATGCCGCGCGGAACATCCTCGTCGAGGGTCAGCGCCTGGTC
GCCGCCGGGCGGAAAGGCGTGGCTGCAATGCCACGTCAGGCGGAGACCGTAAACGCCTGCGGAGCCGACGTGAGACCCGGACCCCTCCGGGCAGCTGGCT
GTGAAACAGGAACCCACCGAGGTGCCGCGTGAACCCACGCCGCACGGCAGGAACCCCCAGCCTTCAAGCCAGGGAGGACGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
426 bp141 aa42467-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MTEADDYRRGRHVVSSLHAHLVFVTRYRRGGLDDAMLTRCEQIMRSVCCDFGAALTEFNGEDDHVHLLVEYPPKVAVSALVNSLKGVSARRLRTEFTDRV
NQHLIRGHFWSPSYLAVSAEDAPLALVREYIEEQRRPAPTR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1155 bp384 aa5781732+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MFNDAIRARDEAYKAGEKLSDTEVQRRVVTLAKLTDERTWLSEVSSVVLVQACQDARRAFRNWFDSLSGKRKGRQVGHPRFRSRKDNRQSIRLTRNGFTV
TPRGVRVAKVGDLRLAWSRPLPSVPTSATVIREADGRYYVSFVVDVDDVPSPATGAEIGVDLGLDRLATLSTGQIVANPRPLRSRQRRLARAQRALARKR
KGSVNRRKAVRRVAVEHRKVRDTRRDHHHKLAARLVRDNQAVYVEDLAVAGLARTRLARSVHDAGWSMLVGLLEEKAARCGRAVVRVGRFFPSSQVCSAC
GHRDGPKPLQVRTWTCPGCGVSHDRDLNAARNILVEGQRLVAAGRKGVAAMPRQAETVNACGADVRPGPLRAAGCETGTHRGAA

 

Blast result :
Comments
ISFsp4 is 62%(ORFA) aa similar to IS606 and 54% (ORF B) to IS1136A .
Contig accession number : NZ_AAII01000195
References
1] US DOE Joint Genome Institute