ISAba7

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Acinetobacter baumannii
Acinetobacter baumannii
DNA section
IS Length : 1039 bp

Ends


IR Length : 22

IRL : GGCTTTGTTGCATAAAGCTATTCATGAAGGTTTCTTCAGCAATATAATTT
IRR : GGCTTTGTTGCACAAACCTTTTAAAGGCTGATTTCACAAAGTCCTATCAA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTGGCAATTTTCAAATAT0
ACTAAAGTGAGATGTTGAATATACTGCGG9

DNA sequence

GGCTTTGTTGCATAAAGCTATTCATGAAGGTTTCTTCAGCAATATAATTTCCAGATGAAGAAGCCTGTCCCTAAAATCTACCGTACAACCAATTGGTCCT
CGTATAACCAAGCTTTAATCAAGCGAGGAAATATTTCAATCTGGTTTGATCCCAAGACCCAATGGTATGCACAGCCTCAAGGCAAGCATGGACGAAATCA
AACTTATTCCGATGCAGCGATTCAATGTTGTTTAATGATCAAATCTCTATTCCGTCTTTCTTTACGTATGGTCACTGGCTTTGCTCAAAGCCTGATTAAA
CTCTGTGGTTTGAATTGGACAGCACCAGATTACTCCACCCTATGTAGACGACAAAAGCGTATTGATATTGCGATAAGCTATCAGCAAAGTCGTGATGGGT
TACACCTACTCGTCGACTCTACAGGGTTAAAATTTTTAGGTGAAGGCGAATGGAAGCGTAAGAAACATCAGCCTGCATATCGTCGCCAATGGCGCAAACT
TCATATTGGTATAGATGCTAAGACCCTTCAAATACGAGCAATTCAGCTCACAACAAACAATGTGAGTGATTCACAGGTGCTTGGTGATTTGCTTGATCAA
ATTCCGTTGGATGAACGAATTGATTCAGTCTATACAGATGGTGCTTATGACACAAAGCACTGCCGACAAGTCATTTTAGATCGAGATGCACATGCAGTCA
TTCCACCTAGGAAGAATGCAAAGCCTTGGAAAGATAAGAAATTGAGATCTTTAGAGAGGAATGAATTGTTAAAAACAGTCAAACGGCTAGGTAGGTCACT
TTGGAAAAAATGGTCAGGTTATCATCGGAGAAGTTTAGTGGAAACCAAAATGCATTGCATTAAATGATTAGGCGATAAATTAACAGCAAGGAGTTTTCCT
AGTCAGGTGAATGAGATTCACGCACGTGTGGCAGTATTAAATAAATTCACGGAATTAGGTCGACCTCACACCCGAGTTGTGCCTTGAATTTGATAGGACT
TTGTGAAATCAGCCTTTAAAAGGTTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
813 bp270 aa55867+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKPVPKIYRTTNWSSYNQALIKRGNISIWFDPKTQWYAQPQGKHGRNQTYSDAAIQCCLMIKSLFRLSLRMVTGFAQSLIKLCGLNWTAPDYSTLCRRQ
KRIDIAISYQQSRDGLHLLVDSTGLKFLGEGEWKRKKHQPAYRRQWRKLHIGIDAKTLQIRAIQLTTNNVSDSQVLGDLLDQIPLDERIDSVYTDGAYDT
KHCRQVILDRDAHAVIPPRKNAKPWKDKKLRSLERNELLKTVKRLGRSLWKKWSGYHRRSLVETKMHCIK

 

Blast result :
Comments
ISAba7 is 92% aa similar to IS17.
References
1] Poirel, L. (2006) Direct submission.