ISAba5
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Acinetobacter baumannii | Acinetobacter baumannii |
DNA section
IS Length : 1044 bp
Ends
IR Length : 15/16
IRL : GGCTTTGTTGCACAAACCTATCTGTAACGGCTTTTTCAGCGATATAATTT
IRR : GGCTTTGTTGCATAAAGGTTTGAAAGATAGAAGCGATCCTAATTGAGCCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTCAACTAAG | CTATAAAAAT | 0 |
DNA sequence
GGCTTTGTTGCACAAACCTATCTGTAACGGCTTTTTCAGCGATATAATTTTTAAAAATGAAGAAGCCTACACACAAAATCTACCGCACAACCAATTGGCC
CGCATATAACCGAGCACTCATGAGTCGCGGAAATATTGCCATTTGGTTTGATCCTGCTACGCAATGGTATGCTCCATCAAAAGGCAAACAAGGGCGAAAT
CAAACCTACTCCGACGCAGCTATCCAATGCTGGTTAATGATTAAATCCTTATTCCGTCTATCTTTACATATGGTCACTGGCTTTGTCCAAAGTCTGATTA
AAATTTGTGTATTAAATTGGACAGCACCAGATTACACCACGCTTTGTAGAAGACAAAAGCATATTGATATTGCAATTAGCTACCAAAAAAGTAGAGATGG
TCTGCATCTACTCGTGGACTCTACTGGCTTGAAATTTCTAGGTGGAGGTGAATGGAAATGCAAGAAACATGGATCTGAATATCGTCGCCAATGGCGTAAG
CTCCATATTGCTATAGAAGCTGAAACCCTTCAAATACGTACAGTACAACTCACGACAAATAATGTCAGCGATTCACAAGTGCTCGAAGATTTACTTTCTC
AAGTTCCCTTGGATGAACGAATTGATTCAGTTTATACAGATGGTGCTTATGACACAAAGCACTGCCGACAAGTCATTTTAAATCGTGATGCACATGCGGT
CATTCCACCCAGGAAGAATACAAAGCCTCGGAAAGATTAGAACAAGTCAGGTCTATAGAGCGAAATGAGTTATTGAAAACAGTCAAACTGCTAGGAAGGT
CACTTTGGAAAAAGTGGTCTGGTTATCACCGTCGAAGTTTGGTGGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAATTAACAGCAAGGAGTTT
TCCTAGTCAGGTGAATGAGATTCATGCACGCGTAGCCCTTTTGAACAAATTCACAGAATTGGGGCGCCCTCACACCCAAGTTGTCACTTGAATTTGGCTC
AATTAGGATCGCTTCTATCTTTCAAACCTTTATGCAACAAAGCC
CGCATATAACCGAGCACTCATGAGTCGCGGAAATATTGCCATTTGGTTTGATCCTGCTACGCAATGGTATGCTCCATCAAAAGGCAAACAAGGGCGAAAT
CAAACCTACTCCGACGCAGCTATCCAATGCTGGTTAATGATTAAATCCTTATTCCGTCTATCTTTACATATGGTCACTGGCTTTGTCCAAAGTCTGATTA
AAATTTGTGTATTAAATTGGACAGCACCAGATTACACCACGCTTTGTAGAAGACAAAAGCATATTGATATTGCAATTAGCTACCAAAAAAGTAGAGATGG
TCTGCATCTACTCGTGGACTCTACTGGCTTGAAATTTCTAGGTGGAGGTGAATGGAAATGCAAGAAACATGGATCTGAATATCGTCGCCAATGGCGTAAG
CTCCATATTGCTATAGAAGCTGAAACCCTTCAAATACGTACAGTACAACTCACGACAAATAATGTCAGCGATTCACAAGTGCTCGAAGATTTACTTTCTC
AAGTTCCCTTGGATGAACGAATTGATTCAGTTTATACAGATGGTGCTTATGACACAAAGCACTGCCGACAAGTCATTTTAAATCGTGATGCACATGCGGT
CATTCCACCCAGGAAGAATACAAAGCCTCGGAAAGATTAGAACAAGTCAGGTCTATAGAGCGAAATGAGTTATTGAAAACAGTCAAACTGCTAGGAAGGT
CACTTTGGAAAAAGTGGTCTGGTTATCACCGTCGAAGTTTGGTGGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAATTAACAGCAAGGAGTTT
TCCTAGTCAGGTGAATGAGATTCATGCACGCGTAGCCCTTTTGAACAAATTCACAGAATTGGGGCGCCCTCACACCCAAGTTGTCACTTGAATTTGGCTC
AATTAGGATCGCTTCTATCTTTCAAACCTTTATGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 872 bp | 291 aa | 120 | 991 | + | No |
Chemistry : DDE
ORF sequence :
MSRGNIAIWFDPATQWYAPSKGKQGRNQTYSDAAIQCWLMIKSLFRLSLHMVTGFVQSLIKICVLNWTAPDYTTLCRRQKHIDIAISYQKSRDGLHLLVD
STGLKFLGGGEWKCKKHGSEYRRQWRKLHIAIEAETLQIRTVQLTTNNVSDSQVLEDLLSQVPLDERIDSVYTDGAYDTKHCRQVILNRDAHAVIPPRKN
TKPRKD*NKSGLSIERNELLKTVKLLGRSLWKKWSGYHRRSLVETKMHCIKLLGDKLTARSFPSQVNEIHARVALLNKFTELGRPHTQVVT
STGLKFLGGGEWKCKKHGSEYRRQWRKLHIAIEAETLQIRTVQLTTNNVSDSQVLEDLLSQVPLDERIDSVYTDGAYDTKHCRQVILNRDAHAVIPPRKN
TKPRKD*NKSGLSIERNELLKTVKLLGRSLWKKWSGYHRRSLVETKMHCIKLLGDKLTARSFPSQVNEIHARVALLNKFTELGRPHTQVVT
Blast result :
Comments
Identified on a plasmid.
ISAba5 is 91% aa similar to IS17.
The transposase of ISAba5 is mutated, there is a STOP codon in frame and one frameshift, the transposase is probably inactive.
ISAba5 is 91% aa similar to IS17.
The transposase of ISAba5 is mutated, there is a STOP codon in frame and one frameshift, the transposase is probably inactive.
References
1] Poirel, L. (2006) Direct submission.