ISAzo3
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006513 | ND | Azoarcus sp. | Azoarcus sp. EbN1 |
DNA section
IS Length : 1282 bp
Ends
IR Length : 14/15
IRL : CAGGGCAATCGCACCTAAAATGCATAACCGATACAGGTAAACCGTTTACG
IRR : CAGGGCAATTGCACCGTCTTGTCATAACCCGAGGCGCTCAAATGGCCAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CAGGGCAATCGCACCTAAAATGCATAACCGATACAGGTAAACCGTTTACGATCATGCGCTTAGCGAGCCCCTGTTCACAACGTCATATTTTGTGTAGCTT
ACTGTCTTTTTGGGACGCCCATGAAGACAGGCCAGTTGATGCCCGTGAGCGAAGTGTTCGTGTCGGTACCCGACCCGCGCAGCAAGCGTCAGGCCCGGCA
CGATCTGTCCGAGTTGCTGACGGTGGCGGTGTGCGCGGTGCTGTGCGGGGCGAACGATTTCGTGGATGTGGCGCTGTGGGGCAAGTCCAACCTGGCCTGG
CTGCGCAAGTTCCTGAAGCTCAAGGCGGGCGTGCCCTCGCATGACACGTTCTGCCGGGTGCTCGCGATGATCGATCCCGCGGCCTTCGAGGCGGCCTTTC
TGCGCTGGGTGGGCGTGCTGGTGCCGGCGCTGGCGCCGGACAGCGTGGTGGCCATCGATGGCAAGACCAGTCGGCGCAGTGGCGGCAAGGATACGTCGGG
GCCGTTGCACATGGTCAGCGCCTTTGCCGCCGGGATGGGTCTGGTGCTGGGGCAGCGCGCCATCGATCAGAAGAGCAACGAGATCACGGCGATTCCCGAG
TTGCTCGCCATGCTGGCGCTCGAAGGCACCATCGTCACGATCGATGCGATGGGCACCCAGGCAGCGATTGCCCGCACCATCCGTAGTCGTGGCGCAGACT
ACGTGTTGTGCGTCAAAGACAACCACCCCACGCTGACCGACTCGATTCTGCTCACCCTGGCCGGCGTGGCGGAAAAGATCGCGCCGGCTTCGCATTTCGA
AGAACAAACCAAGGGCCACGGCCGCGTGGAGGTGCGCCGCTGCTGGGCCTATGATGCGGTCAGCCAGTTGTACAAGTCCGAGCAGTGGGCCGGGCTGCAA
TCGTTTGCGCTCGTCGAGCGCGAACGCACCGTCGACGGCAAGACCAGCGTCGAGCGCCATTACTACATCAGTTCCCTGCCCGCAGATGCCGCCAGAATCG
CGCAGGCCGTGCGCAGCCACTGGGCGGTCGAAAATCAGCTTCACTGGTCGCTCGATGTGCAGTTCAACGATGATCAGTCCCGTGTGCGCCGAGGCTATGC
GGCCAACAACTTCGTGGTGCTGCGCCACATCGTACTGAACCTGCTGCGCCACAACACCACCCGCAAGGCCAGCATCAAGTCCAAGCGACTGCTCGCCTGC
ATGGAGGATGACTTTCGCGAAGAGTTACTTGGGTTGGCCATTTGAGCGCCTCGGGTTATGACAAGACGGTGCAATTGCCCTG
ACTGTCTTTTTGGGACGCCCATGAAGACAGGCCAGTTGATGCCCGTGAGCGAAGTGTTCGTGTCGGTACCCGACCCGCGCAGCAAGCGTCAGGCCCGGCA
CGATCTGTCCGAGTTGCTGACGGTGGCGGTGTGCGCGGTGCTGTGCGGGGCGAACGATTTCGTGGATGTGGCGCTGTGGGGCAAGTCCAACCTGGCCTGG
CTGCGCAAGTTCCTGAAGCTCAAGGCGGGCGTGCCCTCGCATGACACGTTCTGCCGGGTGCTCGCGATGATCGATCCCGCGGCCTTCGAGGCGGCCTTTC
TGCGCTGGGTGGGCGTGCTGGTGCCGGCGCTGGCGCCGGACAGCGTGGTGGCCATCGATGGCAAGACCAGTCGGCGCAGTGGCGGCAAGGATACGTCGGG
GCCGTTGCACATGGTCAGCGCCTTTGCCGCCGGGATGGGTCTGGTGCTGGGGCAGCGCGCCATCGATCAGAAGAGCAACGAGATCACGGCGATTCCCGAG
TTGCTCGCCATGCTGGCGCTCGAAGGCACCATCGTCACGATCGATGCGATGGGCACCCAGGCAGCGATTGCCCGCACCATCCGTAGTCGTGGCGCAGACT
ACGTGTTGTGCGTCAAAGACAACCACCCCACGCTGACCGACTCGATTCTGCTCACCCTGGCCGGCGTGGCGGAAAAGATCGCGCCGGCTTCGCATTTCGA
AGAACAAACCAAGGGCCACGGCCGCGTGGAGGTGCGCCGCTGCTGGGCCTATGATGCGGTCAGCCAGTTGTACAAGTCCGAGCAGTGGGCCGGGCTGCAA
TCGTTTGCGCTCGTCGAGCGCGAACGCACCGTCGACGGCAAGACCAGCGTCGAGCGCCATTACTACATCAGTTCCCTGCCCGCAGATGCCGCCAGAATCG
CGCAGGCCGTGCGCAGCCACTGGGCGGTCGAAAATCAGCTTCACTGGTCGCTCGATGTGCAGTTCAACGATGATCAGTCCCGTGTGCGCCGAGGCTATGC
GGCCAACAACTTCGTGGTGCTGCGCCACATCGTACTGAACCTGCTGCGCCACAACACCACCCGCAAGGCCAGCATCAAGTCCAAGCGACTGCTCGCCTGC
ATGGAGGATGACTTTCGCGAAGAGTTACTTGGGTTGGCCATTTGAGCGCCTCGGGTTATGACAAGACGGTGCAATTGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1125 bp | 374 aa | 121 | 1245 | + | No |
Chemistry : Unknow
ORF sequence :
MKTGQLMPVSEVFVSVPDPRSKRQARHDLSELLTVAVCAVLCGANDFVDVALWGKSNLAWLRKFLKLKAGVPSHDTFCRVLAMIDPAAFEAAFLRWVGVL
VPALAPDSVVAIDGKTSRRSGGKDTSGPLHMVSAFAAGMGLVLGQRAIDQKSNEITAIPELLAMLALEGTIVTIDAMGTQAAIARTIRSRGADYVLCVKD
NHPTLTDSILLTLAGVAEKIAPASHFEEQTKGHGRVEVRRCWAYDAVSQLYKSEQWAGLQSFALVERERTVDGKTSVERHYYISSLPADAARIAQAVRSH
WAVENQLHWSLDVQFNDDQSRVRRGYAANNFVVLRHIVLNLLRHNTTRKASIKSKRLLACMEDDFREELLGLAI
VPALAPDSVVAIDGKTSRRSGGKDTSGPLHMVSAFAAGMGLVLGQRAIDQKSNEITAIPELLAMLALEGTIVTIDAMGTQAAIARTIRSRGADYVLCVKD
NHPTLTDSILLTLAGVAEKIAPASHFEEQTKGHGRVEVRRCWAYDAVSQLYKSEQWAGLQSFALVERERTVDGKTSVERHYYISSLPADAARIAQAVRSH
WAVENQLHWSLDVQFNDDQSRVRRGYAANNFVVLRHIVLNLLRHNTTRKASIKSKRLLACMEDDFREELLGLAI
Blast result :
Comments
ISAzo3 is 55% aa simialr to IS1358. There are 7 full copies and 3 partial copies in Azoarcus sp. EbN1 genome.
References
1] Rabus,R., Kube,M., Heider,J., Beck,A., Heitmann,K., Widdel,F. and Reinhardt,R. (2005) Arch. Microbiol. 183 (1), 27-36