LOCUS Exported 6455 bp DNA linear BCT 01-MAY-2021 DEFINITION Pseudomonas aeruginosa DK2, complete genome. ACCESSION CP003149 VERSION . KEYWORDS TnPa38-CP003149 SOURCE Pseudomonas aeruginosa DK2 ORGANISM Pseudomonas aeruginosa DK2 REFERENCE 1 (bases 1 to 6455) AUTHORS Rau MH, Marvig RL, Ehrlich GD, Molin S, Jelsbak L. TITLE Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment. JOURNAL Environ. Microbiol. 2012;14:2200-11. PUBMED 22672046 REFERENCE 2 (bases 1 to 6455) AUTHORS Yang L, Jelsbak L, Marvig RL, DamkiAŠr S, Workman CT, Rau MH, Hansen SK, Folkesson A, Johansen HK, Ciofu O, HAžiby N, Sommer MO, Molin S. TITLE Evolutionary dynamics of bacteria in a human host environment. JOURNAL Proc. Natl. Acad. Sci. U.S.A. 2011;108:7481-6. PUBMED 21518885 REFERENCE 3 (bases 1 to 6455) AUTHORS Marvig RL, Rau MH, Damkiaer,Sr., Yang L, Boissy R, Ehrlich GD, Sommer MOA., Jelsbak L, Molin,Sr.Direct SubmissionSubmitted (22-NOV-2011) Department of Systems Biology, Technical University of Denmark, Soeltofts Plads, Building 221, Lyngby 2800, Denmark TITLE JOURNAL REFERENCE 4 (bases 1 to 6455) AUTHORS . TITLE Direct Submission JOURNAL Exported Mar 19, 2022 from SnapGene 6.0.2 https://www.snapgene.com COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Environ. Microbiol."; date: "2012"; volume: "14"; pages: "2200-11" COMMENT SGRef: number: 2; type: "Journal Article"; journalName: "Proc. Natl. Acad. Sci. U.S.A."; date: "2011"; volume: "108"; pages: "7481-6" COMMENT SGRef: number: 3; type: "Journal Article"; journalName: "" FEATURES Location/Qualifiers source 1..6455 /strain="DK2" /mol_type="genomic DNA" /db_xref="taxon:1093787" /organism="Pseudomonas aeruginosa DK2" mobile_element 1..6455 /mobile_element_type="transposon:TnPa38" /label=TnPa38 /note="Accession = TnPa38-CP003149; Family = Tn3; Group = Tn21; Synonyms = Tn7172; Partial = ; Transposition = ; OtherInformation = ; Hosts: Organism = Pseudomonas aeruginosa DK2|Taxonomy = |BacGroup = |MolecularSource = |Region = |Country = Denmark|OtherLocInfo = Copenhagen CysticFibrosis Clinic CF patients since 1973|DateIdentified = 2012|First = yes; Capture = yes" repeat_region 1..38 /label=IRL (TnPa38) /note="Name = IRL; AssociatedElement = TnPa38; LibraryName = IR (Tn501); OtherInformation = internal IR || Identical to IRL (Tn1696), ITL (Tn5037), IRL (TnAs2), internal IR; Capture = yes" gene 1 /locus_tag="PADK2_14225" /label=PADK2_14225 gene complement(34..591) /locus_tag="PADK2_14220" /label=PADK2_14220 CDS complement(34..591) /codon_start=1 /gene="tnpR" /product="TnpR" /label=tnpR (TnPa38) /note="AssociatedElement = TnPa38; Class = Accessory Gene; Subclass = Resolvase; Target = ; SequenceFamily = Serine Site-Specific Recombinase; Chemistry = Serine; LibraryName = tnpR (TnPa38); OtherInformation = ; Capture = yes " /translation="MLIGYARVSTQDQNLELQREALSKAGCKKVFEDKVSGTRADRPGL AKTLEMLREGDTLVVWKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDSIDTGTPSGRFF FHVMASLAEMERELTVERTRAGLEVAKQLGRKGGRKPKMTDSKIESAKKLLASGVPPKD VAKNLGVSIPTLYRWVPASTHA" gene complement(585..956) /locus_tag="PADK2_14215" /label=PADK2_14215 CDS complement(585..956) /codon_start=1 /transl_table=11 /gene="WP_003100853.1" /locus_tag="PADK2_14215" /product="WP_003100853.1" /label=WP_003100853.1 (TnPa38) /note="AssociatedElement = TnPa38; Class = Passenger Gene; Subclass = Hypothetical; Chemistry = ; Target = ; LibraryName = WP_003100853.1 (TnPa38); OtherInformation = ; Capture = yes" /protein_id="AFM65124.1" /translation="MSTSTIEALASAWARIAEEAEFPADYEGTATPQAHRASEAIQEQI RERIVATNDMRLFSLLHLLGQASLRMEQALWPEDYERMTREVEEALRQATDANARSYTH EEVMQAMQERIDRARDKPC" gene complement(953..1453) /locus_tag="PADK2_14210" /label=PADK2_14210 CDS complement(953..1453) /codon_start=1 /transl_table=11 /gene="WP_003100856.1" /locus_tag="PADK2_14210" /product="WP_003100856.1" /label=WP_003100856.1 (TnPa38) /note="AssociatedElement = TnPa38; Class = Passenger Gene; Subclass = Hypothetical; Chemistry = ; Target = ; LibraryName = WP_003100856.1 (TnPa38); OtherInformation = ; Capture = yes" /protein_id="AFM65123.1" /translation="MKLSFHQHIALFWMIGAPGVFAPVIENAKRPDAGAVMAWGVAIVA VMILFTPLLLRCPPFRRWYGRTDALSERQRQALAERGLRRYYQTAFDDGYVPRVMPYVW RIIWTVGGLMAVTAVLPTNTGRPAFDALVVFSTWYPIGVMLLVFASRPLGRLIRQRAQE RRK" gene complement(1450..1776) /locus_tag="PADK2_14205" /label=PADK2_14205 CDS complement(1450..1776) /codon_start=1 /transl_table=11 /gene="WP_003100858.1" /locus_tag="PADK2_14205" /product="WP_003100858.1" /label=WP_003100858.1 (TnPa38) /note="AssociatedElement = TnPa38; Class = Passenger Gene; Subclass = Hypothetical; Chemistry = ; Target = ; LibraryName = WP_003100858.1 (TnPa38); OtherInformation = ; Capture = yes" /protein_id="AFM65122.1" /translation="MSRSRRKTPIVGHTTCGSEREDKKLWHQRWRTRERTALTSASPEA LSAHLPLLENQASSVWSMGKDGRSYWPVKRQAATADRIANHKGRNPQERASLKKRLLRK WMSK" gene complement(2031..2405) /locus_tag="PADK2_14200" /label=PADK2_14200 CDS complement(2031..2405) /codon_start=1 /transl_table=11 /gene="cupin domain-containing protein" /locus_tag="PADK2_14200" /product="Cupin domain-containing protein" /label=cupin domain-containing protein (TnPa38) /note="AssociatedElement = TnPa38; Class = Passenger Gene; Subclass = Other; Chemistry = ; Target = ; LibraryName = cupin domain-containing protein (TnPa38); OtherInformation = cupin domain; Capture = yes" /protein_id="AFM65121.1" /translation="MKEGSPMTVESRIFSVAEYVQPSEGEPIRSVVLETRDSIIVVWHV HPGQEIAAHIHPHGQDTWTVLSGMADYFQGNGIVRALREGEIAVARPGQVHGARNTGTE PFVFVSVVASANAGFVLAER" gene complement(2624..3010) /locus_tag="PADK2_14195" /label=PADK2_14195 CDS complement(2624..3010) /codon_start=1 /transl_table=11 /gene="WP_003100872.1 " /locus_tag="PADK2_14195" /product="WP_003100872.1 " /label=WP_003100872.1 (TnPa38) /note="AssociatedElement = TnPa38; Class = Passenger Gene; Subclass = Hypothetical; Chemistry = ; Target = ; LibraryName = WP_003100872.1 (TnPa38); OtherInformation = ; Capture = yes" /protein_id="AFM65120.1" /translation="MSENRLPDYLDHIQQAATDARSFVEGMAKDDFLADKRTQQAVIMS LIVIGEAATKVMDGYVEFTQAHADVPWRSMRNMRNRMAHGYFDINLDVVWETVQEWLPA LLQQLPAVRQDADDEDRNDKGMEP" gene complement(3007..3297) /locus_tag="PADK2_14190" /label=PADK2_14190 CDS complement(3007..3297) /codon_start=1 /transl_table=11 /gene="nucleotydltransferase" /locus_tag="PADK2_14190" /product="Nucleotydltransferase " /label=nucleotydltransferase (TnPa38) /note="AssociatedElement = TnPa38; Class = Passenger Gene; Subclass = Other; Chemistry = ; Target = ; LibraryName = nucleotydltransferase (TnPa38); OtherInformation = ; Capture = yes" /protein_id="AFM65119.1" /translation="MRPSVVLDMKRSAVREAVGRFRAANPRVFGSVLHGTDRDGSDLDL LVDALPGATLLDLGDLEEELKSLLGVDVDLLTPGDLPPKFRAKVLAEAQPI" gene 3456..6422 /locus_tag="PADK2_14185" /label=PADK2_14185 CDS 3456..6422 /codon_start=1 /transl_table=11 /gene="tnpA" /locus_tag="PMK1_c00079" /product="TnpA" /label=tnpA (TnPa38) /note="AssociatedElement = TnPa38; Class = Transposase; Subclass = ; SequenceFamily = ; Chemistry = DDE; Target = ; LibraryName = tnpA (TnPa38); OtherInformation =; Capture = yes " /db_xref="GI:695177680" /inference="ab initio prediction:same species:2.60" /inference="protein motif:same species:COG4644" /protein_id="AIT04769.1" /translation="MPRRSILSAAERESLLALPDTKDELIRHYTFSESDLSIIRQRRGP ANRLGFAVQLCYLRFPGVILGADEPPFPPLLRLVANQLKVGIESWDEYGQREQTRREHL VELQTVFGFQPFTIGHYRQAVQLLTELAMQTDKGIVLARALIEHLRRQSVIVPALNAVE RASAEAITRANRRLYDALAEPLTDVHRRRLDDLLKRRDNGKTTWLAWLRQSPVKPNSRH MLEHIERLKAWQALDLPSGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVAL AIEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEA KQAGRDPFAAIEAVMSWDAFAESVTEAQRLAQPEDFDFLHRIGESYATLRRYAPEFLDV LKLRAAPAAKDVLDAIEVLRSMNSDNARKVPTDAPTEFIKPRWQKLVMTDTGIDRRYYE LCALSELKNALRSGDIWVQGSRQFKDFEDYLVPPAKFASLKQASELPLAVATDCDQYLH DRLTLLETQLPTVNRMALANELPDAIITESGLKITPLDAAVPDTAQALIDQTAMILPHV KITELLLEVDEWTGFTRHFAHLKSGDLAKDKNLLLTTILADAINLGLTKMAESCPGTTY AKLAWLQAWHIRDETYGAALAELVNAQFRHPFAEHWGDGTTSSSDGQNFRTGSKAESTG HINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTD TAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDATYEALKPMIGGTLNIKHVRAH WDEILRMATSIKQGTATASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVEL RRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYL ERAANALRGHGQAVDDGLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA" repeat_region complement(6415..6455) /label=IRR (TnPa38) /note="Name = IRR; AssociatedElement = TnPa38; LibraryName = IRR (Tn21); OtherInformation = identical to IRR (TnPa38), IRL (TnPa38), IRL (TnShe11), IRR (TnShe11), IRR (Tn1696), IRL (Tn5037), IRL (TnAs2); Capture = yes" ORIGIN 1 ggggtcgtct cagaaaacgg aaaataaagc acgctaagcg tgcgtggagg ctggcaccca 61 gcggtacagc gtcggaatgg acacgccgag gttcttggcc acgtccttgg gcggcacccc 121 gctggccagc agcttcttgg ccgactcgat cttgctgtcg gtcatcttcg gcttgcggcc 181 gcctttgcgg ccgagctgct tggcgacttc cagcccggcg cgggtgcgct cgacggtcag 241 ctcgcgctcc atttcggcaa ggctcgccat gacgtggaag aagaaccgcc cggatggtgt 301 gccggtgtcg atggagtcgg tgaggctcct gaactggaca ccgtgcttgt gcagatcgcc 361 gaccagatcg accagttgct tgaccgaccg gcccagccgg tcgagcttcc agacgaccaa 421 agtatcgcct tcgcgcagca tttcgagcgt cttggccaag ccaggccggt ctgcccgcgt 481 gccactcacc ttgtcctcga agaccttttt acatccggcc ttgctcaagg cttcgcgttg 541 cagctccagg ttctgatcct gcgtcgagac gcgcgcatag ccaatcaaca tggcttgtct 601 cgcgcccggt cgatgcgttc ctgcatcgcc tgcatcactt cttcgtgggt gtacgatctg 661 gcgttggcgt cggtggcttg ccgcagggct tcctcaacct cgcgcgtcat ccgctcgtaa 721 tcctccggcc acagcgcttg ctccatgcgc agcgacgcct gacccagcag gtgcagcagg 781 ctgaacagcc gcatgtcgtt ggtggcgacg atgcgctccc gaatctgctc ctgaatagct 841 tcgctagccc gatgcgcttg tggtgtggca gtcccctcgt agtcagcggg gaattccgct 901 tcctcggcaa tccttgccca ggcgctggcc agcgcctcga tggttgacgt gctcatttcc 961 gccgctcctg tgctctttgg cgaatcaacc ggccaagggg cctcgacgcg aaaaccagca 1021 gcatcacgcc tatcggatac caggtcgaga agaccaccaa ggcatcgaag gctggccgtc 1081 cggtgttggt aggcagtacg gcggtcacag ccatcaaccc gccgaccgtc cagatgatgc 1141 gccacacgta gggcatcacg cggggcacgt agccgtcatc gaaagcggtc tggtagtagc 1201 ggcgcaggcc gcgctcggca agcgcctggc gctgccgctc cgacagcgca tccgtccggc 1261 cataccagcg ccggaatggt ggacagcgca gcagcaaagg ggtgaagagg atcatcaccg 1321 ccacgatcgc gacaccccac gccatgacgg cgccggcatc gggccgcttg gcgttctcga 1381 tcacgggcgc gaagacgccc ggagcaccga tcatccagaa cagcgcaatg tgctgatgga 1441 aggagagctt catttgctca tccacttgcg cagcaggcgc tttttcaggg aggcgcgttc 1501 ttgcgggttg cgtcccttgt gattggcgat gcgatccgcc gtggcggcct ggcgcttgac 1561 gggccagtag gagcggccat ccttgcccat cgaccagacg ctgctggcct ggttttccag 1621 caggggcaga tgggcgctca gggcttcggg cgacgcgctg gtcagcgccg tgcgctcacg 1681 ggtgcgccag cgctgatgcc agagcttctt gtcctcgcgc tcgctgccgc aggtcgtgtg 1741 cccgacgatg ggtgttttgc ggcggctgcg gctcataacg tagtggtctc caagaacatt 1801 caggactgat cccaggcgtc gatggtcaag acctgatcgg caggacaggc ggctacgcgg 1861 tcgggaactg gatggtgttc agtctcatgc cgaccccatt cgattgatcg cgtcgcttgc 1921 ggcacgctgc gacgcaagga ggtttgcgac ctggtttagc agccgtgtcc gctgcatgtc 1981 tgttacctat ctccccgacc gctcattgga ccaactccag agattgggct ctatcgctca 2041 gccaatacga aaccggcatt ggctgatgcc acaaccgaga cgaacacaaa tggctcggta 2101 cctgtatttc gcgccccgtg cacttggccc ggtcttgcca cggctatctc accttccctg 2161 agggcacgaa caatcccatt gccctgaaag taatcagcca ttcccgacaa aacagtccac 2221 gtgtcttggc cgtgaggatg aatgtgagcc gcaatttcct gcccgggatg gacatgccaa 2281 accacgataa ttgagtctcg ggtttcaagc acaacggaac gaataggctc gccttcggac 2341 ggctgaacat actcggctac agaaaatatt ctcgattcaa cagtcatcgg agatccctct 2401 ttcacagtgc ccccagacag gctggatatg agttctaact cgaatttgaa cgggaggctg 2461 gtcgtgcggt cgtgcagttg ccgatgagcg tgtcggctgc tgcctccttg cccaccagcg 2521 aactcacgtc cgttgcggcc atccagaagg tcttgcccga gcgcggctca taggtcgcgg 2581 gatcgaacac gccagagggg ccgaacatcg gcggcttgat tggtcatggc tccatgcctt 2641 tgtcgttacg gtcttcatcg tcggcatcct gacgcacggc gggcaattgc tggagcaacg 2701 ccggcagcca ttcctgtacc gtctcccaca ccacatcgag gttgatgtcg aaatagccgt 2761 gagccatgcg attacgcata ttgcgcatgc tgcgccacgg cacgtcggca tgcgcctggg 2821 tgaactcgac gtagccatcc atcacctttg tggccgcctc gccgatgacg atcaggctca 2881 tgatgacggc ctgctgggtg cgcttgtcgg ccaagaagtc gtccttggcc atcccttcca 2941 cgaagctgcg cgcatcggtt gcggcctgct gaatgtggtc gaggtaatcg ggcaggcggt 3001 tctcgctcat atcggttgcg cctccgcgag caccttggcc cggaacttcg gcggcaggtc 3061 gccgggagtc agcagatcga cgtcaacgcc gagcagcgat ttcagttctt cttccaaatc 3121 gcccaagtcc aacaacgtgg caccgggcag cgcatcgacc aacaggtcga ggtcgctgcc 3181 atcccggtcg gtgccatgca gcaccgagcc gaagacgcgc gggttcgcgg cgcgaaagcg 3241 gcctaccgct tcacgcactg cgcttcgctt catgtcaagc acaacagacg gtcgcatggg 3301 catcctttct tatcgaaact cgttgagatg atatgcaatc aagaatagaa tttcaagaac 3361 tattttcgag aatcgcaatg ccttgattcc cgtgccgcgc cggttgcctt ggcgggcttg 3421 tcacaaacct acgttttcaa gaagaaggaa accgcatgcc ccgccgttcg atcctctccg 3481 ccgccgagcg cgaaagcctg ctggcgttgc cggacaccaa ggatgagttg atccgtcact 3541 acacgttcag cgaaagcgac ctctccatca tccggcagcg gcgcggcccg gccaatcggc 3601 tgggcttcgc ggtgcagctc tgctacctgc gctttcccgg cgtcatcctt ggcgctgatg 3661 agccaccgtt cccgccattg ctgagactgg tcgccaacca gctcaaggtc ggcatcgaaa 3721 gctgggacga gtacgggcag cgtgagcaga cccgacgcga gcacctggtc gagctgcaaa 3781 cggtgttcgg cttccagccg ttcacgattg gccactaccg gcaggctgtc cagttgctga 3841 ccgagctggc catgcaaacc gacaagggca tcgtgctggc cagagccttg atcgagcacc 3901 tgcggcggca gtcggtcatt gtgcccgccc tcaacgccgt cgagcgggcg agcgccgaag 3961 cgattacccg cgccaaccgg cgtctctacg acgccttggc tgagccgctg acggacgtgc 4021 atcgccgtcg cctcgacgat ctgctcaagc gccgcgacaa cggcaagacg acgtggctgg 4081 cctggctgcg gcaatccccg gtcaaaccga actcgcggca catgctggaa cacatcgaac 4141 gcctcaaggc gtggcaggcg ctcgacctgc cctccggcat cgagcggctg gttcaccaga 4201 accggctgct caagatcgcc cgcgagggcg gccagatgac gcccgccgac ctggcgaagt 4261 tcgagccgca gcggcgttac gcgaccctgg tggcgctcgc catcgagggc atggccaccg 4321 tcaccgacga aatcatcgac ctgcatgacc gcatcctggg caagctgttc aatgccgcca 4381 agaacaagca tcagcagcag ttccaggcat ccggcaaggc gatcaatgcc aaggtgcggc 4441 tgttcgggcg catcggccag gcgctgatcg aggccaagca agcgggccgc gatccgttcg 4501 ctgccatcga ggccgtcatg tcctgggatg ctttcgccga gagcgtcacc gaagcgcagc 4561 ggctcgcgca acccgaggac ttcgatttcc tgcaccgcat cggcgagagc tacgccacgc 4621 tgcgccgcta cgcgccggaa tttctcgacg tgctcaagtt gcgggccgcg cccgccgcca 4681 aggacgtact cgacgccatc gaggtgctgc gcagcatgaa cagcgacaac gcccgcaagg 4741 tgcccaccga cgcgccgacc gagttcatca agccgcgctg gcagaagctg gtgatgaccg 4801 acaccggcat cgaccggcgc tactacgaac tgtgcgcgct gtcggagctg aagaacgcgc 4861 tgcgctccgg cgacatctgg gtgcaaggct cgcgccagtt caaggacttc gaggactacc 4921 tggtgccgcc cgcgaaattc gccagcctca agcaggccag cgaattgccg ctggccgtgg 4981 ccaccgattg cgaccagtac ctgcatgacc ggctgacgct gctggaaacg cagctcccca 5041 ccgtcaaccg catggcgctg gccaacgagc tgccggacgc catcatcacg gagtcgggcc 5101 tgaagatcac gccgctcgat gcggcggtgc ccgataccgc acaggccctg atcgaccaga 5161 cggcgatgat cctaccgcac gtcaagatca ccgaattgct gctggaggta gacgaatgga 5221 cgggcttcac ccggcacttc gcccacctga agtcaggcga cctggccaag gacaaaaacc 5281 tgttgctgac cacgatcctc gccgacgcga tcaacctggg cctgaccaag atggcggaat 5341 cgtgccccgg cacgacctac gccaagctgg cctggctgca agcctggcac atccgcgacg 5401 aaacctacgg ggcggcactg gccgagctgg tcaacgcgca gttccgacat cccttcgccg 5461 agcattgggg cgacggcacc acgtcatcgt cggacggcca gaacttccgc accggcagca 5521 aggccgagag caccggccac atcaatccga aatacggcag cagcccaggg cggacgttct 5581 acacccatat ctccgaccag tacgcgccgt tccacaccaa ggtcgtgaac gtcggcgtgc 5641 gcgactcgac ctacgtgctc gacggcctgc tgtatcacga atccgacctg cggatcgagg 5701 agcactacac cgacacggca gggttcacgg accacgtctt cgcgttgatg cacctgctgg 5761 gcttccgctt cgccccgcgc attcgtgacc tgggcgacac caagctctac atcccgaagg 5821 gcgatgccac ctacgaggcg ttgaaaccga tgatcggcgg cacgctcaac atcaagcacg 5881 tccgcgccca ttgggatgaa atcctgcgga tggccacctc gatcaagcag ggcacggcga 5941 cggcctcgct gatgctcagg aagcttggca gctacccgcg ccagaacggc ctggccgtcg 6001 ccctgcgtga gctgggacgc atcgagcgca cactgttcat cctggactgg ctgcaaagcg 6061 tcgagctgcg ccgccgcgtg catgccgggc tgaacaaagg cgaggcgcgc aacgcgctgg 6121 cccgcgccgt gttcttcaac cgcctggggg aaatccgcga ccgcagcttc gagcagcagc 6181 gctaccgggc cagcggcctc aacctggtga cggcggccat cgtgctatgg aacacggtct 6241 atctggagcg ggccgcgaac gccttgcgtg gccacggtca agccgtcgat gacggcctgt 6301 tgcagtacct gtcgccgctc ggctgggagc acatcaacct gaccggcgat tacctctggc 6361 gcagcagcgc caagatcggc gcgggcaagt tcaggccgct acggccgctg caaccggctt 6421 agcgtgcttt attttccgtt ttctgagacg acccc //