LOCUS Exported 6253 bp ds-DNA linear BCT 11-JUN-2020 DEFINITION Pseudomonas mendocina strain LM7 transposon Tn5563a, complete sequence. ACCESSION KJ920395 VERSION . KEYWORDS Tn5563a-KJ920395.1 SOURCE Pseudomonas mendocina ORGANISM Pseudomonas mendocina REFERENCE 1 (bases 1 to 6253) AUTHORS Szuplewska M, Ludwiczak M, Lyzwa K, Czarnecki J, Bartosik D. TITLE Mobility and Generation of Mosaic Non-Autonomous Transposons by Tn3-Derived Inverted-Repeat Miniature Elements (TIMEs) JOURNAL PLoS ONE 9 (8), E105010 (2014) PUBMED 25121765 REFERENCE 2 (bases 1 to 6253) AUTHORS Szuplewska M, Bartosik D. TITLE Direct Submission JOURNAL Submitted (01-JUN-2014) Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, Warsaw 02-096, Poland REFERENCE 3 (bases 1 to 6253) AUTHORS . TITLE Direct Submission JOURNAL Exported Tuesday, Jun 16, 2020 from SnapGene 5.1.3 https://www.snapgene.com COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "PLoS ONE"; date: "2014"; volume: "9"; issue: "8"; pages: "E105010" COMMENT SGRef: number: 2; type: "Journal Article"; journalName: "Submitted (01-JUN-2014) Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, Warsaw 02-096, Poland" COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6253 /organism="Pseudomonas mendocina" /strain="LM7" /mol_type="genomic DNA" /country="Poland" /isolation_source="mineral sediment from Lubin copper mine" /db_xref="taxon:300" mobile_element 1..6253 /mobile_element_type="transposon:Tn5563a" /label=Tn5563a /note="Accession = Tn5563a-KJ920395.1; Family = Tn3; Group = Tn3; Synonyms = ; Partial = ; Transposition = yes; OtherInformation = ; Hosts: Organism = Pseudomonas mendocina strain LM7|Taxonomy = |BacGroup = |MolecularSource = |Region = Lubin|Country = Poland|OtherLocInfo = black shale ore collected in Lubin copper mine|DateIdentified = 2014|First = yes; Capture = yes " repeat_region 1..39 /label=IR (Tn5563a) /note="Name = IR; AssociatedElement = Tn5563a; LibraryName = IR (Tn5044); OtherInformation = ; Capture = yes" CDS complement(41..970) /codon_start=1 /transl_table=11 /gene="tnpR" /product="TnpR" /label=tnpR (Tn5563a) /note="AssociatedElement = Tn5563a; Class = Accessory Gene; Subclass = Resolvase; Target = ; SequenceFamily = Serine Site-Specific Recombinase; Chemistry = Serine; LibraryName = tnpR (Tn5563a); OtherInformation = ; Capture = yes" /protein_id="AIL83779.1" /translation="MKIGYARVSTRDQKADLQVDALKQAGCERIYQDIASGAKSARPEL DKLLANVRPGDAVVIWKLDRLGRSLKHLVELVGELAERKVGLQSLNDPIDTTHAQGRLV FNLFASLAEFERELIRERTQAGLSAARARGRIGGRPKGLPAKAEATAMAAETLYREGRL SVSAIGEKLHISKSTLYSYLRHRGVEIGAYQKSARSRDQQPSAASPAEPPAAERVATVT LRLAVVNNSKFVRGRKRATENIERYCLEPYGMKRLDAGHYELTIPYRSDDELDKSVHDL LTEISQEADMRNCFVEMGAWEEDTEKRW" misc_feature 975..1110 /label=res (Tn5663a) /note="Name = res; AssociatedElement = Tn5663a; LibraryName = res (Tn5663a); Capture = yes " misc_feature 985..1026 /label=res_site_III (Tn5563a) /note="Name = res_site_III; AssociatedElement = Tn5563a; LibraryName = res_site_III (Tn5044); Capture = yes " misc_feature 1029..1059 /label=res_site_II (Tn5563a) /note="Name = res_site_II; AssociatedElement = Tn5563a; LibraryName = res site II (Tn5563a); Capture = yes " misc_feature 1083..1110 /label=res_site_I (Tn5563a) /note="Name = res_site_I; AssociatedElement = Tn5563a; LibraryName = res_site_I (Tn5044); Capture = yes " CDS 1172..1411 /codon_start=1 /transl_table=11 /gene="RHH_6" /product="RHH_6" /function="antitoxin||binds to DNA(IPR031914)" /label=RHH_6 (Tn5563a) /note="AssociatedElement = Tn5563a; Class = Passenger Gene; Subclass = Antitoxin; SequenceFamily = RHH_6 (Pfam:PF16762); Target = ; Chemistry = ; LibraryName = RHH_6 (Tn1412); OtherInformation = Pfam PF16762.4; Capture = yes" /protein_id="AIL83780.1" /translation="MNTIRWNVAVSADTDQSLRMFLASQGGGRKGDLSRFIEEAVRAHI LELSAEQAKAANAHLSEAELTNAVDEALDWARKR" CDS 1411..1821 /codon_start=1 /transl_table=11 /gene="PIN_3" /product="PIN_3" /function="cleave single stranded RNA (Pfam:PF13470)" /label=PIN_3 (Tn5563a) /note="AssociatedElement = Tn5563a; Class = Passenger Gene; Subclass = Toxin; SequenceFamily = PIN_3 (Pfam:PF13470); Target = single stranded RNA; Chemistry = ; LibraryName = PIN_3 (Tn5563a); OtherInformation = ; Capture = yes " /protein_id="AIL83781.1" /translation="MRVVLDTNILFSALISPHGAPDAIYRAWRAARFEVVTSRMQLDEI RRASRYPKLQAILQPAKVGAMINNLQRAVVLERLTIEVEADDPDDSFLLAMALAGDADY LVTGDRRAGLLQRGHIERTRIVTPAVFCVEVL" CDS 1825..4818 /codon_start=1 /transl_table=11 /gene="tnpA" /product="TnpA" /label=tnpA (Tn5563a) /note="AssociatedElement= Tn5563a; Class = Transposase; Subclass = ; SequenceFamily = ; Chemistry = DDE;Target = ; LibraryName = tnpA (Tn5563a); OtherInformation = ; Capture = yes" /protein_id="AIL83782.1" /translation="MPVGFLTQEQRDGFGRYVDSPSREELERYFHLSDEDREAIQVLRG NHNRLGYAVLLTTVRFVGVLPDKPAAVPVEVLQVLCRQLAIPDPDCLQRYSDHRRWIHA TDIQNRFGYRHFTDPGIGFRLSRWLYALCWTGTDRPGVLFERATSWLFTQKVLLPGVSQ LERFIAQLRSRVEERLWFTLGRSVTEEQRLQLQDLLTVAEGNRSSRLDQLRSGPVMVSG PALIRALRRLDDVRGIGITLPAAAHIPPSRIAALARFANTAKVTAINRLPASRRMATLV AFALCLEATAHDDALEVLEALLRDLFSNAEKADKKARMRSLKDLDRSAATLAAACKVVL DSSISDDNVRARLFNDLPRTTLEKALEEVNALIRPVDDVYFLALEARYRSVRRFLPDLL KHIRFGFSPAGKGVAASLEWLQLNLPRRKPEDDAPQEIVAKAWQKHITREDGSLDMGAY VFCTLDALRTALRRRDVFVSPSWRYADPRLGLLDGAEWLAARPIICRSLGLTIDAKTTL DALSVELDATWLAVAARLPDNPAIQLSENTEGKTELSLGALDKLDEPCSLLQLRAAVSD LMPRVDLPEILLEIAARTGFSEAFTHVSERNARADNLVTSLCAVLLGGACNTGLEPLIR TDNPALRRDRLSWVSQNYIRDDTLSAANAILVGAQSQLELAQVWGGGEVASADGMRFVV PVRTVHAGPNPKYFGTGRGVTWYNLISDQFSGLNAITVPGTLRDSLVLLAVVLEQQTEL QPTQIMTDTGAYSDVVFGLFRLLGYHFSPRLADVGGTRFWRTRPDADYGKLNGLARQSV KLDLIAEHWDDLLRLAGSLKLGRVPATGIMRTLQTGDRPTRLAQALAEFGRIEKTLHTL TYIDDESKRRATLTQLNRGEGRHSLARAVFHGKRGELRQRYREGQEDQLGALGLVVNII VLWNTLYMTAAVERLKQHGYPVLEEDLARLSPLIYEHINMLGRYSFAVPEEVARGELRP LRNPDDDL" CDS complement(5051..5326) /codon_start=1 /transl_table=11 /gene="merP" /product="MerP" /label=merP (Tn5563a) /note="AssociatedElement= Tn5563a; Class = Passenger Gene; Subclass = Heavy Metal Resistance; Chemistry =; Target = Mercury; LibraryName = merP (Tn5563a); OtherInformation = periplasmic binding protein; Capture =yes" /protein_id="AIL83783.1" /translation="MRKLLIAVLFALPFVALAAPPKTVTLDVQNMTCGLCPITVKKSLE KVSGVSDVQVNFDQKTATVTYDPDKAQPEALTEATANAGYPSTVQK" CDS complement(5339..5695) /codon_start=1 /transl_table=11 /gene="merT" /product="MerT" /label=merT (Tn5563a) /note="AssociatedElement= Tn5563a; Class = Passenger Gene; Subclass = Heavy Metal Resistance; Chemistry =; Target = Mercury; LibraryName = merT (Tn5563a); OtherInformation = transport protein; Capture =yes" /protein_id="AIL83784.1" /translation="MGMGMQLTGKGSLVASSLTAIGASVCCVGPLVLLALGVGGTWVGA LTMMEPLRPLFIGLTLLFLGLAFRKLYLVPQVCTPGTPCADPRTLVRQRLVFWIVSVLL LGLLAVPWLAPLFY" CDS 5764..6162 /codon_start=1 /transl_table=11 /gene="merR" /product="MerR" /label=merR (Tn5563a) /note="AssociatedElement= Tn5563a; Class = Passenger Gene; Subclass = Heavy Metal Resistance; Chemistry =; Target = Mercury; LibraryName = merR (Tn5563a); OtherInformation = regulatory protein; Capture =yes" /protein_id="AIL83785.1" /translation="MATELTIGKLADAAGVNVETIRYYQRRGLLDEPAKPLGGHRRYPV DMVKRLRFIKRAQALGFTLSEVGGLLTLDESCACAETRARAARKLALIEQKMADLVVMQ QLLGELVQQCDAGDGGTICPIIEALIRE" repeat_region complement(6215..6253) /label=IR (Tn5563a) /note="Name = IR; AssociatedElement = Tn5563a; LibraryName = IR (Tn5044); OtherInformation = ; Capture = yes" ORIGIN 1 ggggtttggg gagcaatgga accaaaaacc aacgtaagcc ctaccaacgc ttttcggtgt 61 cttcttccca ggcgcccatc tcgacaaaac agttgcgcat gtcggcctcc tggctgatct 121 cggtcagcag gtcatgcacg ctcttgtcca gctcatcgtc gctccgatac ggaatggtca 181 actcatagtg gccggcatcc agccgcttca tgccataggg ctccaggcag tagcgctcaa 241 tgttctccgt ggcccgcttc cggccgcgca cgaacttgct gttattcacc accgcgaggc 301 gcagggtgac ggtggccacc cgctcggcgg cgggcggctc tgccggcgac gcggccgaag 361 gctgctggtc gcgtgacctg gcgctcttct ggtacgcgcc gatctcgaca ccacggtggc 421 gcaggtagct gtacagcgtg ctcttggaga tgtgcagctt ctcgccgatc gcgctgacgc 481 tcaggcgacc ttcgcggtag agggtttcgg ccgccatggc ggtggcctca gccttggctg 541 gcaggccctt gggacggcca ccgatccggc cacgcgcccg tgcggccgac agacccgcct 601 gagtccgctc gcggatcagc tcgcgctcga actccgccag cgaggcgaac aggttgaaca 661 ccaggcggcc ttgggcgtgg gtggtgtcga tggggtcatt caggctctgt aagccgacct 721 tgcgctctgc cagctcgccg accaactcga ccaggtgctt gagggaacgc ccaaggcgat 781 ccagcttcca gatcaccacg gcatcacccg gccgcacgtt ggccagcagt ttgtccaact 841 ccggccgggc gcttttcgcg ccgctggcga tgtcttggta gatgcgttcg cacccggcct 901 gtttcagggc atcgacttgt aggtcggctt tctgatcccg agtgctcact cgcgcataac 961 cgatcttcat caaaagtact gtttactcga ctacgttagt aatagttgaa ctttgattaa 1021 gcgtaccagt tatttgaacc gtagcgcggg gagcttaacg aaccgagcca ttcctcgata 1081 gagttcggca aaaccttcgt tttgtcgaac cattgcatcg ccctttgtga ttggcgtata 1141 aacacacaaa cacctattag cggagaacgc tatgaatacc attcgctgga atgtcgccgt 1201 ctcggccgac accgaccagt cgcttcggat gtttctggcc agccagggcg gcggccgtaa 1261 gggcgacctg tcgcgcttca tcgaagaagc ggtacgggca cacatcctgg agctgagcgc 1321 tgagcaggcc aaggccgcta acgcccatct gagtgaggca gaattgacca acgcggttga 1381 cgaagcgctc gactgggcac gtaagcgctg atgcgggtcg tgttggatac caacatcctg 1441 ttcagcgccc tgatctcgcc acatggcgcg cccgatgcga tctaccgtgc ctggcgggcg 1501 gcgcgtttcg aggtggtgac ctcgcggatg caactcgatg aaattcgtcg agccagccgc 1561 tatcccaagc ttcaggccat cctacagccc gccaaggtgg gcgccatgat caataacctg 1621 caacgggctg tggtactgga gcgcctgacc atcgaggtcg aagccgatga tccggatgac 1681 tcgtttttgc tggccatggc cttggcgggc gatgcggact acctggtaac cggtgatcgc 1741 cgcgccggcc tgctgcaacg cgggcacatc gaacgcacgc ggatcgtcac gcccgccgtg 1801 ttctgcgtcg aggtgctgtg atcaatgccg gtcggttttc tgactcaaga gcaacgcgac 1861 ggttttggcc gctatgttga ttcgcccagc cgtgaagagc tggaacgtta cttccacctg 1921 agcgatgaag accgtgaagc catccaggtg ctgcggggta accataaccg tctgggttat 1981 gccgttctgc tgaccaccgt ccgcttcgtt ggcgttctgc cggacaagcc cgccgccgtg 2041 ccggtggaag tcctgcaggt gctttgccga caactggcga ttccagaccc cgactgcctc 2101 cagcgctata gcgatcatcg ccgctggata catgccaccg atattcagaa ccgctttggc 2161 tatcgtcatt tcaccgatcc gggcatcggc tttcgcttga gccgctggct gtatgccctc 2221 tgctggacgg gcaccgaccg gccgggagtg ctgtttgagc gagccacctc gtggctgttc 2281 acacagaaag tcctcctgcc tggtgtgtct caactagagc gctttatcgc ccagttgcgc 2341 agtcgggtcg aagaacgcct ctggtttacg ctgggccgca gcgtgactga ggaacagcga 2401 ttgcaactgc aagacttgct gacggtggcc gaaggcaacc gcagctcccg gctggatcaa 2461 ttgcgctccg gcccggtcat ggtcagtggc cccgcgttga ttcgggcact gcgccggctc 2521 gatgacgtgc gcggcatcgg catcaccttg ccggcggcgg cgcacatccc tcccagccgt 2581 atcgccgccc tggcccgctt cgccaacacg gccaaggtca ccgcgattaa tcggctgccg 2641 gcgtcgcggc ggatggcgac actggtggcc ttcgcactct gcctggaggc gactgcgcac 2701 gacgacgcac tggaagtcct ggaggccttg ctgcgcgacc tgttcagcaa cgcggagaag 2761 gccgacaaga aagcccgcat gcgcagcctg aaagacctgg atcggtcggc cgcgacgctc 2821 gccgccgcgt gcaaggtcgt gctggacagc tcgatcagcg atgacaacgt gcgcgcccgg 2881 ctgttcaacg acctgccgag gaccaccctg gaaaaggccc tggaagaggt caacgcgctg 2941 atccgcccgg tagatgacgt ctattttctt gcattggaag cgcgctaccg cagcgtgcgc 3001 cgcttcctgc ccgacctgct caagcacatc cgcttcggct tcagcccggc cggcaagggc 3061 gtggcggcta gtctggagtg gctgcaactg aacctgccgc gccggaagcc agaggatgac 3121 gcgccgcagg agatcgtggc caaggcttgg cagaagcaca tcacccgcga agatggctcc 3181 ctcgacatgg gtgcctatgt gttctgcacg ctcgatgcgc tgcgcacggc cctgcgccgc 3241 cgcgatgtct tcgtctcgcc cagttggcgc tatgccgacc cgcgccttgg cctgctcgac 3301 ggtgccgaat ggctggcggc gcgaccgatc atctgccggt cactgggcct gaccatcgac 3361 gccaaaacca ccctggacgc cttgtccgtc gagctggatg caacctggct ggcagtagcc 3421 gcgcgcctgc ccgacaaccc ggcgattcaa ctgagcgaga acaccgaggg caagaccgaa 3481 ctgtcgctcg gggcgctgga caagctggac gagccctgct cgttgctgca actgcgggcg 3541 gccgtgtctg acctgatgcc gcgtgtcgat ctgccggaaa tcctcttgga aatcgccgcc 3601 cgcactggct tttccgaggc cttcacccat gtctccgaac gcaatgcacg cgccgacaac 3661 ctggtcacca gcctctgcgc ggtgctgttg ggcggggcct gcaacaccgg cctggagccc 3721 ttgatccgca ccgacaaccc ggcgctgcgc cgtgaccggc tgtcctgggt cagccagaat 3781 tatatccgcg acgacaccct gtcagcggct aacgccatcc tggtcggagc gcaaagccaa 3841 ctggaactgg cccaagtctg gggtggcggc gaggtcgcct ccgccgatgg catgcgcttc 3901 gtcgtaccgg tgcgcaccgt gcatgccggc cccaatccga agtatttcgg caccggccgg 3961 ggtgtcacct ggtacaacct gatttccgac caattctccg gcctcaacgc catcaccgtg 4021 cccggcacgc tgcgcgacag cctggtgttg ctggcggtcg tgctggaaca gcagaccgag 4081 ttgcagccga cgcaaatcat gaccgacacc ggggcctaca gcgatgtggt gttcgggctc 4141 ttccgcctac ttggctacca cttcagtccg cggctggccg atgtcggcgg tacccgcttc 4201 tggcgcacgc gcccggacgc ggactacggc aagctcaacg ggctggcccg ccagtcggtc 4261 aaactcgacc tgatcgccga gcactgggac gacctgctgc gcctggccgg ctcgctcaaa 4321 ctcggccggg tgccggcgac tggcatcatg cgcacgctgc aaacgggaga tagacccacc 4381 cggctggccc aggcgctggc cgaattcggg cggatcgaaa agactctgca cacgttgacc 4441 tatatcgacg acgagtccaa gcgccgcgcc accctgaccc agttgaaccg aggcgaaggc 4501 cggcacagcc tggcccgcgc cgtgttccac ggcaaacgcg gcgagctccg ccagcgctac 4561 cgcgaaggcc aggaagacca gctcggtgct ctgggcctgg tggtgaacat catcgtgctg 4621 tggaacaccc tctacatgac ggcggccgtg gaacggctca agcagcacgg ctatccagtg 4681 ctggaagagg atttggcccg gctatcgccg ctgatctacg agcacatcaa catgctcggg 4741 cggtattcct ttgcggtacc ggaagaagtt gcgcgcggcg agctgcggcc actgcgtaat 4801 ccagacgacg acctgtgatc cccctaaacg ctatgagcaa cacccaagct gctgctggat 4861 cggcgggcac ttcaccgagc cgaacgaaca gaaaacgcag caatcccctg ggttggggcg 4921 cagcagcgcc ttgcagttgc tgcactcgta atagaactgg caggcgtccg tgggcatggt 4981 ttccggcttg gcgaagccgc agcgcgggca agtcagcacg gactcaagga caatggcgct 5041 catcgtgacc tcacttctgc actgtggagg ggtatcccgc gttcgcggtc gcctcagtca 5101 gtgcctcggg ctgggcctta tcgggatcgt aggtgacggt cgccgtcttc tggtcgaaat 5161 tgacctggac gtcactcacg ccggacacct tctccagcga cttcttgacc gtgatcggac 5221 agagtccgca cgtcatgttc tgcacgtcga gcgtgacggt tttcggggga gccgccagcg 5281 ccacgaaggg caaggcgaaa agcacggcga tcagcagttt gcgcatggtt aatctccttc 5341 agtagaacag cggggcgagc cacggcacgg ccaataggcc gagcagcagc acgctgacga 5401 tccagaacac gagtcgctgt cgcacgagcg tgcgcggatc ggcgcagggt gtacctggcg 5461 tacaaacctg tggcaccagg tagagcttgc ggaatgccaa tcccaggaac agtagagtca 5521 acccgatgaa gagggggcgt agtggctcca tcatggtcag agcgcccacc cacgtaccgc 5581 cgacaccgag tgccaacagc accagtggcc cgacacagca caccgacgca ccgatggcgg 5641 tcagcgaact cgcgaccagc gagcctttcc cggtgagttg catccccatt cccatctcct 5701 gagcctgatt gcctaggtgc tattctaaac tccgtaccaa agtacggaat caaggagaaa 5761 gtgatggcca cagagctgac cattggcaag ctggcagacg ccgccggggt gaacgtcgag 5821 acgatccgct actaccagcg acgcgggctg ctggatgaac cagctaaacc cttgggtggc 5881 catcggcgct atccggtgga catggtgaag cgactgcgtt tcatcaagcg ggctcaggcg 5941 ctgggtttca cgctctcgga agtcggtgga ctgctgacgc tggatgagtc gtgcgcctgt 6001 gccgaaacgc gagcacgggc tgcacgcaag ctcgcgttga tcgagcagaa gatggccgac 6061 ttggtcgtca tgcagcaact gttaggcgaa ctggtgcagc aatgtgatgc gggagacggc 6121 ggaacgatct gcccgatcat cgaggcactg atcagagagt aatgcctggc gggtgagctg 6181 gagatcggaa agccccttta cggtgggatt cagagcttac gttggttttt ggttccattg 6241 ctccccaaac ccc //