LOCUS Exported 5470 bp ds-DNA linear BCT 22-MAY-2020 DEFINITION Pseudomonas syringae pv. syringae plasmid pPSR1, complete sequence. ACCESSION AY342395 VERSION . KEYWORDS . SOURCE Pseudomonas syringae pv. syringae ORGANISM Pseudomonas syringae pv. syringae REFERENCE 1 (bases 1 to 5470) AUTHORS Sundin GW, Mayfield CT, Zhao Y, Gunasekera TS, Foster GL, Ullrich MS. TITLE Complete nucleotide sequence and analysis of pPSR1 (72,601 bp), a pPT23A-family plasmid from Pseudomonas syringae pv. syringae A2. JOURNAL Mol. Genet. Genomics 2004;270:462-76. PUBMED 14634868 REFERENCE 2 (bases 1 to 5470) AUTHORS LMB TITLE Direct Submission JOURNAL Exported Tuesday, May 26, 2020 from SnapGene 5.1.3 https://www.snapgene.com COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Mol. Genet. Genomics"; date: "2004"; volume: "270"; pages: "462-76" COMMENT Sundin GW, Mayfield CT, Zhao Y, Gunasekera TS, Foster GL, Ullrich MS. Direct Submission Submitted (15-JUL-2003) Plant Pathology, Michigan State University, 103 Center for Integrated Plant Systems, East Lansing, MI 48824, USA FEATURES Location/Qualifiers source 1..5470 /organism="Pseudomonas syringae pv. syringae" /plasmid="pPSR1" /strain="A2" /mol_type="genomic DNA" /label=pathovar: syringae /note="pathovar: syringae" /db_xref="taxon:321" mobile_element 1..5470 /mobile_element_type="transposon:Tn5393c" /label=Tn5393c /note="Accession = Tn5393c-AY342395.1; Family = Tn3; Group = Tn163; Synonyms = ; Hosts: Organism = Pseudomonas syringae pv. syringae A2|Taxonomy = NCBI:txid321|BacGroup = |MolecularSource = plasmid pPSR1|Region = |Country = United States|OtherLocInfo = |DateIdentified = 2003|First = ; Capture = yes" repeat_region 1..81 /label=IRLl (Tn5393c) /note="Name = IRLl; AssociatedElement = Tn5393c; LibraryName = IRLl (Tn5393c); OtherInformation = 100% identical to IRL (Tn5393e); Capture = yes" repeat_region 1..40 /label=IRL (Tn5393c) /note="Name = IRL; AssociatedElement = Tn5393c; LibraryName = IRL (Tn5993c) ; OtherInformation =; Capture = yes " CDS complement(107..952) /codon_start=1 /transl_table=11 /gene="APH(6)-Id (ARO:3002660)" /locus_tag="KPNJ1_05663" /product="APH(6)-Id" /function="antibiotic inactivation (ARO:0001004)" /label=APH(6)-Id (Tn5393c) /note="AssociatedElement = Tn5393c; Class = Passenger Gene; Subclass = Antibiotic Resistance; SequenceFamily = APH(6) (ARO:3000151); Target = aminoglycoside antibiotic (ARO:0000016); LibraryName = APH(6)-Id (Tn5393c); OtherInformation = strB, orfI || strict match to reference sequence for ARO:3002660 (bitscore: 568) ; Capture = yes" /db_xref="GI:595631210" /protein_id="AHM87995.1" /translation="MGLMFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKG LKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQAT EIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPR RIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY " CDS complement(943..1746) /codon_start=1 /transl_table=11 /gene="APH(3'')-Ib (ARO:3002639)" /locus_tag="Kpn2146_5802" /product="APH(3'')-Ib" /function="antibiotic inactivation (ARO:0001004)" /label=APH(3'')-Ib (Tn5393c) /note="AssociatedElement = Tn5393c; Class = Passenger Gene; Subclass = Antibiotic Resistance; SequenceFamily = APH(3'') (ARO:3000127); Target = aminoglycoside antibiotic (ARO:0000016); LibraryName = APH(3'')-Ib (Tn5393c); OtherInformation = strA, orfH || perfect match to reference sequence for ARO: 3002639; Capture = yes" /db_xref="GI:582035664" /protein_id="AHI38995.1" /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRR GELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPS MGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARV ERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIA NAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG" CDS complement(1815..2426) /codon_start=1 /transl_table=11 /gene="tnpR" /locus_tag="PMK1_c00070" /product="TnpR" /function="recombinaseactivity (GO:0000150)" /label=tnpR (Tn5393c) /note="AssociatedElement = Tn5393c; Class = Accessory Gene; Subclass = Resolvase; Target = ; SequenceFamily = Serine Site-Specific Recombinase; Chemistry = Serine; LibraryName = tnpR (Tn5393c); OtherInformation = ; Capture = yes" /db_xref="GI:695177671" /inference="ab initio prediction:same species:2.60" /inference="similar to AA sequence:same species:P03013" /protein_id="AIT04760.1" /translation="MLIGYARVSKADGSQSLDLQHDALRAAGVERDNIYDDLASGGRDD RPGLTACLKSLRDGDVLVVWKLDRLGRSLAHLVNTVKELSDRKIGLRVLTGKGAQIDTT TASGRMVFGIFATLAEFERDLIRERTMAGLASARARGRKGGRKFALTKAQVRLAQAAMA QRDTSVSDLCKELGIERVTLYRYVGPKGELRDHGKHVLGLT" misc_feature 2330..2551 /label=res (Tn5393c) /note="Name = res; AssociatedElement = Tn5393c; LibraryName = res (Tn5393c); Capture = yes " CDS 2552..5437 /codon_start=1 /transl_table=11 /gene="tnpA" /locus_tag="PMK1_c00071" /product="TnpA" /function="transposase activity (GO:0004803)" /label=tnpA (Tn5393c) /note="AssociatedElement = Tn5393c; Class = Transposase; Subclass = ; SequenceFamily = ; Chemistry = DDE; Target = ; LibraryName = tnpA (Tn5393c); OtherInformation =; Capture = yes" /db_xref="GI:695177672" /inference="ab initio prediction:same species:2.60" /inference="protein motif:same species:COG4644" /protein_id="AIT04761.1" /translation="MPRRVTLTDRQKDALLRLPTSQTDLLKHYTLSDEDLGHIRLRRRA HNRFGFALQLCVLRYPGRVLAPGELIPAEVIEFIGAQLGLGADDLVDYAAREETRHEHL AELRGLYGFRTFSGRGASELKEWLFREAEMAVSNEDIARRFVAECRRTRTVLPATSTIE RLCAAALVDAERRIETRIASRLPMSIREQLLALLEETADDRVTRFVWLRQFEPGSNSSS ANRLLDRLEYLQRIDLPEDLLAGVPAHRVTRLRRQGERYYADGMRDLPEDRRLAILAVC VSEWQAMLADAVVETHDRIVGRLYRASERICHAKVADEAGVVRDTLKSFAEIGGALVDA QDDGQPLGDVIASGSGWDGLKTLVAMATRLTATMADDPLNHVLDGYHRFRRYAPRMLRL LDLRAAPVALPLLEAVTALRTGLNDAAMTSFLRPSSKWHRHLRAQRAGDARLWEIAVLF HLRDAFRSGDVWLTRSRRYGDLKHALVPAQSIAEGGRLAVPLRPEEWLADRQARLDMRL RDVGRAARAGTIPGGSIENGVLHIEKLEAAAPTGAEDLVLDLYKQIPPTRITDLLLEVD AATGFTEAFTHLRTGAPCADRIGLMNVILAEGINLGLRKMADRTNTHTFWELIRIGRWH VEGEAYDRALAMVVEAQAALPMARFWGMGTSASSDGQFFVATEQGEAMNLVNAKYGNTP GLKAYSHVSDQYAPFATQVIPATASEAPYILDGLLMNDAGRHIREQFTDTGGFTDHVFA ACAILGYRFAPRIRDLPSKRLYAFNPSAAPAHLRALIGGKVNQAMIERNWPDILRIAAT IAAGTVAPSQILRKLASYPRQNELATALREVGRVERTLFMIDWILDAELQRRAQIGLNK GEAHHALKRAISFHRRGEIRDRSAEGQHYRIAGMNLLAAIIIFWNTMKLGEVVANQKRD GKLLSPDLLAHVSPLGWEHINLTGEYRWPKP" repeat_region complement(5390..5470) /label=IRRl (Tn5393c) /note="Name= IRRl; AssociatedElement= Tn5393c; LibraryName= IRR (Tn5393c); OtherInformation= ;Capture=yes " repeat_region complement(5431..5470) /label=IRR (Tn5393c) /note="Name = IRR; AssociatedElement = Tn5393c; LibraryName = IRR (Tn5993c) ; OtherInformation =; Capture = yes " ORIGIN 1 ggggtcgttt gcgggagagg gcgaaatcct acgctaaggc tttggccaac gatattctcc 61 ggtaagattg atgtgttccc aggggatagg agaagtcgct tgatatctag tatgacgtct 121 gtcgcacctg cttgatcgcg gccgcgatag ctagatcgcg ttgctcctct tctccatccg 181 cgttccaagc tgcggaaagg cacccataag cgtacgcctg gtcgagcagg cgacgcggat 241 cgacgtccag cgcacgagag aatgcgtccg ccatctgtgc aatgcgtcta ggatcgagac 301 aaaggtcgtc tctgtcagcc ggatcgtaga acatattggc ggcgccaaag cccacttcac 361 cgaccagacc gacgggatct atcaccagcc agccgcgact ggagaacatg atgttttcat 421 gatgcagatc gccatgtagc ccacgcagtt ccgaggcatt gctcatcatt tgatcggcta 481 taatcgccgc gtggacgtag tcagtttgac aacctgcgtt ttgatcatcg cgcgcccgct 541 gaaacaaagc tgcaaagcga tcccggatcg ggagaagggc agaaggcagg ggttcctcag 601 atgcggcata cagcttcgcc attagttccg ctgcaatttc ggtcgcctgg tagtcgccgt 661 gctcggcaac gatgtgagag agcattcgct ccccggcata ttcgagcaac atcagattgt 721 tctcacgacc gagcaaccgg actgctcccc tcccattgcg ccataccaga tagtcggccc 781 cgcgcagttc atcagcaatg tcttctatag gtttcaatcc cttgacgatt gcaggagtcc 841 cgtctggcaa tgaaactttc caaacgaggc tggaaaaggt gtccgcaatg agaacaggtt 901 gcgaaacgtg ccaatgagca ggaaaaacag gcggcatgaa catcaacccc aagtcagagg 961 gtccaatcgc agatagaagg caaggcgttc gcggtcgggg gcttcgatcc ccaatacatt 1021 gaataggaca gcgaaggcgc gctctgcttc atctggcgct gcccagttct cttcggcgtt 1081 agcaatcatg agtgccaaat cggcatagcg atctgctgtt ccgagccgcc caaggtcgat 1141 cagacccgtg cattgaagag ttttagggtc caccatgaag ttcggcatgc agggatcacc 1201 atggcaaaca accatatcgg tgcgctcttg gtcgagccgc accggtagct ctcgttcgac 1261 acgagccaaa agatcgagct gcggcgtact cttgtcctcg tccggtaaga agtcgggatt 1321 gacggcattg cgggacacca catcaacggc gcgtccgaac attcgcgaca gcctgcgctc 1381 aaacggacat tgatcaaccg ataggctgtg aacagcgcca agttgctgcc ccattgacgg 1441 ccacgctttg agcaaatccg ctccagacag atcagccgcc ggtactcccg gaattgccgt 1501 tatcaccaag catgcaccct cctgttcctc ctgccagttg atcacctcgg ggcaagccac 1561 acctcgacct ttgagccaaa tgaggcggtc acgctctcca gcgagctcac cgcggcggga 1621 agcaggtgcg attttcgcga aggcatgccc gtcaccacgt cgaaaaacaa aatcaccaga 1681 ttctccgcct ctgacaggca accagtcaga atgcgattca ccaaaaaaaa tattagttcg 1741 attcaatgga ggttccttca gttttctgat gaagcgcgga ggtggctcaa cctgcgaaaa 1801 gaaacgagtt gctacgtaag tccgagaaca tgctttccat ggtctctgag ctcgcctttg 1861 ggaccgacat atcggtagag agtgacgcgc tcgatgccga gttccttgca gagatcggaa 1921 actgaagtat cgcgctgggc catggcggct tgcgcgagac gcacctgagc tttggtgagc 1981 gcgaattttc gtccgccctt gcgaccgcgc gctctcgcgg aggcgagacc cgccatggtg 2041 cgctctcgga tcagatcccg ctcgaactcg gccaaggtgg cgaagattcc gaacaccatg 2101 cgaccggacg cagtcgtggt gtcgatctga gcgccctttc cagtcagaac ccgcaggccg 2161 atcttgcggt ctgacagctc cttcaccgtg ttgaccagat gggcaagcga tcgtccgagg 2221 cgatcgagct tccagaccac cagcacatcg ccgtcacgca atgacttgag gcaggcagtc 2281 aagccagggc gatcatcacg accgccggaa gcaagatcat catagatatt gtcccgttcg 2341 acacctgcgg cgcgcaaggc gtcgtgctgc aggtcgagag actgcgagcc atcggctttg 2401 gagacgcggg catatccgat cagcatgtat cacaaacgtt ggtttgaggc ggcgcttcgg 2461 ccacgattgc attgacctct ggaaatgtat ctcaaccagc ttcataaaca aagcgtcttg 2521 aacgctatca gattttgaaa aaggaacatg tatgccgcgt cgcgtcactc taaccgatcg 2581 gcagaaagac gcgctgttgc gcttgccgac ttcacagacg gatttgctca agcactatac 2641 gctgagtgat gaagaccttg ggcatatcag gctgcgtcgg cgcgctcaca acaggttcgg 2701 cttcgccctg caattgtgtg tcctgcgcta tcccggccgg gtgctggctc caggcgaact 2761 gatccctgca gaggtcatcg aatttatcgg agcgcagctt ggcctgggtg ccgacgatct 2821 cgtagactat gctgcccgcg aggaaacacg gcacgagcat cttgccgagt tacgggggct 2881 ctacggcttc cgcaccttct ccggacgtgg tgcgagcgag ctgaaggaat ggttgttccg 2941 agaagccgag atggcggtgt cgaacgagga tatcgcccgt cgcttcgtag ccgagtgccg 3001 acgcacccgc actgtccttc ccgcgacatc cacgatcgag cggctttgtg ccgcggctct 3061 cgtcgatgcc gagcgacgca tcgagacgag gatcgccagt cggctgccta tgtcgatccg 3121 agaacagttg ctggcattgc tcgaggagac ggctgatgat cgggtgaccc gttttgtgtg 3181 gctgcgccag ttcgagcctg gctcgaactc ttcgtcggcc aaccggctgc tcgaccggct 3241 cgaatatctg caacgcatcg atctccccga ggatctgctt gccggcgttc ctgcccatcg 3301 ggtgactcgt ctgcgcaggc agggtgaacg gtattatgcc gacggcatgc gcgatctccc 3361 ggaggacagg cggcttgcga tcttggctgt ttgcgtctcg gaatggcagg cgatgttggc 3421 cgacgcagtg gtcgaaaccc acgaccggat cgtcggccgt ctctaccgtg cttcggagcg 3481 tatttgccat gcaaaggtcg cagacgaagc gggggtggtg cgtgacaccc tgaaatcctt 3541 cgccgagatc gggggcgccc tggtcgatgc acaggatgat ggccagccgc tgggcgatgt 3601 catcgcgagt gggtcagggt gggacggctt aaaaaccctt gttgcaatgg caaccaggct 3661 gaccgccacc atggccgacg atccgctcaa tcatgtgctc gacggttatc accgcttccg 3721 ccgatacgct ccacgcatgt tgcgcctgct cgatctgcga gctgcgcccg ttgcactgcc 3781 gcttctggaa gcggtgacgg cccttcgtac cggtttgaac gatgccgcga tgaccagctt 3841 cttgcggccc agctcgaaat ggcatcgcca ccttcgggcc cagagggctg gcgacgctcg 3901 cctatgggag atcgcggtgc tgttccatct gcgcgatgcg ttccgctccg gagatgtctg 3961 gcttactagg tcccggcgct atggcgatct gaaacacgca ctcgttccgg cacaatccat 4021 cgcggaaggc ggtcgtctcg ctgtgccatt gcggccggag gaatggctgg cagaccggca 4081 agctcgcctc gacatgcggt tgcgcgacgt tggccgtgcc gctcgcgcag gcacgatccc 4141 gggcgggtcg attgaaaacg gcgttctgca tatcgagaaa ctcgaagccg ccgcgccgac 4201 aggcgccgaa gatctggtgc tcgatctcta caagcagatc ccgcccacgc gcatcaccga 4261 tctcctgctg gaggtggatg cggcgaccgg cttcaccgaa gcgttcaccc atctgcgcac 4321 aggagcaccc tgcgctgacc ggatcgggct aatgaacgtt atcttggcgg aagggatcaa 4381 cctcggcttg cgcaaaatgg cggatcggac aaacacccac accttctggg aattgatccg 4441 cattggacgg tggcatgtcg agggcgaagc ctatgaccgg gcgctggcca tggtggtcga 4501 ggcacaggca gcgttaccca tggcccggtt ctggggcatg ggcacgtcgg cttcgagcga 4561 cggacagttc ttcgtcgcta cagagcaagg tgaggccatg aacctggtca acgcgaaata 4621 tggcaatacc ccgggcctga aagcctatag ccacgtctcc gaccaatatg cgccgttcgc 4681 aacccaggtg attcctgcaa cggcaagcga agcgccttac atcctcgatg gcctgctgat 4741 gaacgatgct ggacgccata tccgcgagca gttcaccgac acgggcggct tcaccgatca 4801 cgtctttgcc gcatgtgcca ttctcggcta ccggttcgct ccgcgcatcc gcgacctgcc 4861 atccaaacgg ctctacgcgt tcaatccgtc ggccgccccg gcgcacctgc gagcgttgat 4921 cggcggaaag gtcaaccaag ccatgatcga gcgcaattgg cccgacatcc tgcgcatcgc 4981 cgccaccatt gctgccggga ccgtcgcgcc aagccagatt ctgcggaaac tcgcctccta 5041 tccgcggcag aacgagctcg cgacagccct gcgggaagtc ggtcgcgtcg agcgcaccct 5101 gttcatgatc gactggattc tggatgccga actccaacgg cgtgcccaga tcgggctcaa 5161 caaaggcgaa gctcatcatg cgctgaagcg ggcaatcagc ttccaccgcc gcggtgaaat 5221 ccgcgaccgt tccgccgaag gccagcatta ccgcatcgcc ggcatgaatc tgctcgccgc 5281 catcatcatc ttctggaaca ccatgaagct cggcgaggtc gttgcaaacc agaaacgcga 5341 tggaaagctg ctatcgcccg atctcttggc ccatgtttcg ccgctcggat gggaacacat 5401 caatctcacc ggagaatatc gctggccaaa gccttagcgt aggattccgc cccctcccgc 5461 aaacgacccc //