LOCUS Exported 4948 bp DNA linear BCT 04-DEC-2021 DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi B plasmid R1, complete sequence. ACCESSION KY749247.1 VERSION . KEYWORDS Tn3.1-KY749247.1 SOURCE Salmonella enterica ORGANISM Salmonella enterica REFERENCE 1 (bases 1 to 4948) AUTHORS Cox KEL, Schildbach JF. TITLE Sequence of the R1 plasmid and comparison to F and R100. JOURNAL Plasmid 2017;91:53-60. PUBMED 28359666 REFERENCE 2 (bases 1 to 4948) AUTHORS . TITLE Direct Submission JOURNAL Exported Mar 19, 2022 from SnapGene 6.0.2 https://www.snapgene.com COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Plasmid"; date: "2017"; volume: "91"; pages: "53-60" FEATURES Location/Qualifiers source 1..4948 /plasmid="R1" /sub_species="enterica" /mol_type="genomic DNA" /serovar="Paratyphi B" /db_xref="taxon:57045" /organism="Salmonella enterica subsp. enterica serovar Paratyphi B" mobile_element 1..4948 /mobile_element_type="transposon:Tn3.1" /label=Tn3.1 /note="Accession = Tn3.1-KY749247.1; Family = Tn3; Group = Tn3; Synonyms = ; Partial = ; Transposition = ; OtherInformation = Has 9pb insertion relative to Tn3-V00613; Hosts: Organism = Salmonella enterica subsp. enterica serovar Paratyphi B|Taxonomy = NCBI:txid57045|BacGroup = |MolecularSource = plasmid R1|Region = |Country =|OtherLocInfo =|DateIdentified =|First =; Capture = yes;" repeat_region 1..38 /label=IRL (Tn3.1) /note="Name = IRL; AssociatedElement = Tn3.1; LibraryName = IR (Tn3); OtherInformation = Identical to IR (Tn2); Capture = yes" CDS complement(148..1008) /codon_start=1 /transl_table=11 /gene="bla TEM-1 (ARO:3000873)" /locus_tag="ECNIH4_23070" /product="Bla TEM-1" /function="antibiotic inactivation (ARO:0001004)" /EC_number="3.5.2.6" /label=bla TEM-1 (Tn3.1) /note="AssociatedElement = Tn3.1; Class = Passenger Gene; Subclass = Antibiotic Resistance; SequenceFamily = TEM beta-lactamase (ARO:3000014); Target = penem (ARO:3003706)||cephalosporin (ARO:0000032)||monobactam (ARO:0000004)||penam (ARO:3000008); Chemistry = ; LibraryName = bla TEM-1 (Tn3); OtherInformation = perfect match to reference sequence for ARO:3000873||Synonyms: TEM-98, RTEM-1; Capture = yes " /db_xref="GI:723224451" /inference="EXISTENCE:same species:RefSeq" /protein_id="AIX57101.1" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" promoter complement(1009..1113) /gene="bla" /label=AmpR promoter repeat_region 1103..1140 /label= internal IR (Tn3.1) /note="Name = internal IR; AssociatedElement = Tn3.1; LibraryName = internal IR (Tn3); OtherInformation = Identical to IR (Tn2); Capture = yes" CDS complement(1191..1748) /codon_start=1 /transl_table=11 /gene="tnpR" /locus_tag="KPNJ1_05809" /product="TnpR" /function="resolvase||serine site-specific recombinase" /label=tnpR (Tn3.1) /label=hypothetical protein CDS /note="AssociatedElement = Tn3.1; Class = Accessory Gene; Subclass = Resolvase; Target = ; SequenceFamily = Serine Site-Specific Recombinase; Chemistry = Serine; LibraryName = tnpR (Tn3); OtherInformation = first defined as a repressor; Capture = yes" /db_xref="GI:595631422" /protein_id="AHM88205.1" /translation="MRIFGYARVSTSQQSLDIQIRALKDAGVKANRIFTDKASGSSTDR EGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMG QMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATE IAHQLSIARSTVYKILEDERAS" misc_feature 1751..1871 /label=res (Tn3.1)-1 /note="Name = res; AssociatedElement = Tn3.1; LibraryName = res (Tn3)-1; OtherInformation = ; Capture = yes" misc_feature 1754..1776 /label=res_site_III_a (Tn3.1) /note="Name = res_site_III_a; AssociatedElement = Tn3.1; LibraryName = res_site_III_a (Tn3); OtherInformation = ; Capture = yes" misc_feature 1782..1817 /label=res_site_II_a (Tn3.1) /note="Name = res_site_II_a; AssociatedElement = Tn3.1; LibraryName = res_site_II_a (Tn3); OtherInformation = ; Capture = yes" misc_feature 1840..1868 /label=res_site_I (Tn3.1) /note="Name = res_site_I; AssociatedElement = Tn3.1; LibraryName = res_site_I (Tn3); OtherInformation = ; Capture = yes." CDS 1877..4915 /codon_start=1 /transl_table=11 /gene="tnpA" /product="TnpA" /function="transposase" /label=tnpA (Tn3.1) /note="AssociatedElement = Tn3.1; Class = Transposase; Subclass = ; SequenceFamily = ; Chemistry = DDE; Target = ; LibraryName = tnpA (Tn3.1); OtherInformation = In frame three amino acid deletion relative to tnpA (Tn3); Capture = yes;" /protein_id="AHZ92227.1" /translation="VLKKPSGREADMPVDFLTTEQVESYGRFTGEPDELQLARYFHLDE ADKEFIGKSRGDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLA EYGQRENTRREHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWL MQHRIILPGATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLL ESLKKGPVTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIA RMSPQKRMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKS ALALASACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHDEMVEQ YGRVRRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISQSWKRL VINKEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVY RSLGHPTDPQEAIKSLGHQLDSRYRQVAARLGENEAVELDVSGPKPRLTISPLASLDEP DSLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGGG EVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDSIF VLEGLLEQETGLNPTEIMTDTAGASDLVFGLFWLLGYQFSPRLADAGASVFWRMDHDAD YGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQASVLVRSLLKSERPSGLTQAII EVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQED QLGALGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINMLGHYSFT LAELVTKGHLRPLKEASEAENVA" misc_feature 3569..3574 /label=res_minus_35 (Tn3) /note="Name = res_minus_35; AssociatedElement = Tn3; LibraryName = res (Tn20); OtherInformation = ; Capture = yes" repeat_region complement(4911..4948) /label=IRR (Tn3.1) /note="Name = IRR; AssociatedElement = Tn3.1; LibraryName = IR (Tn3); OtherInformation = Identical to IR (Tn2); Capture = yes" ORIGIN 1 ggggtctgac gctcagtgga acgaaaactc acgttaaggg attttggtca tgagattatc 61 aaaaaggatc ttcacctaga tccttttaaa ttaaaaatga agttttaaat caatctaaag 121 tatatatgag taaacttggt ctgacagtta ccaatgctta atcagtgagg cacctatctc 181 agcgatctgt ctatttcgtt catccatagt tgcctgactc cccgtcgtgt agataactac 241 gatacgggag ggcttaccat ctggccccag tgctgcaatg ataccgcgag acccacgctc 301 accggctcca gatttatcag caataaacca gccagccgga agggccgagc gcagaagtgg 361 tcctgcaact ttatccgcct ccatccagtc tattaattgt tgccgggaag ctagagtaag 421 tagttcgcca gttaatagtt tgcgcaacgt tgttgccatt gctgcaggca tcgtggtgtc 481 acgctcgtcg tttggtatgg cttcattcag ctccggttcc caacgatcaa ggcgagttac 541 atgatccccc atgttgtgca aaaaagcggt tagctccttc ggtcctccga tcgttgtcag 601 aagtaagttg gccgcagtgt tatcactcat ggttatggca gcactgcata attctcttac 661 tgtcatgcca tccgtaagat gcttttctgt gactggtgag tactcaacca agtcattctg 721 agaatagtgt atgcggcgac cgagttgctc ttgcccggcg tcaacacggg ataataccgc 781 gccacatagc agaactttaa aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact 841 ctcaaggatc ttaccgctgt tgagatccag ttcgatgtaa cccactcgtg cacccaactg 901 atcttcagca tcttttactt tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa 961 tgccgcaaaa aagggaataa gggcgacacg gaaatgttga atactcatac tcttcctttt 1021 tcaatattat tgaagcattt atcagggtta ttgtctcatg agcggataca tatttgaatg 1081 tatttagaaa aataaacaaa taggggttcc gcgcacattt ccccgaaaag tgccacctga 1141 cgtctaagaa accattatta tcatgacatt aacctataaa aataggcgta tcacgaggcc 1201 ctttcgtctt caagaatttt ataaaccgtg gagcgggcaa tactgagctg atgagcaatt 1261 tccgttgcac cagtgccctt ctgatgaagc gtcagcacga cgttcctgtc cacggtacgc 1321 ctgcggccaa atttgattcc tttcagcttt gcttcctgtc ggccctcatt cgtgcgctct 1381 aggatcctcc ggcgttcagc ctgtgccaca gccgacagga tggtgaccac catttgcccc 1441 atatcaccgt cggtactgat cccgtcgtca ataaaccgaa ccgctacacc ctgagcatca 1501 aactctttta tcagttggat catgtcggcg gtgtcgcggc caagacggtc gagcttcttc 1561 accagaatga catcaccttc ctccaccttc atcctcagca aatccagccc ttcccgatct 1621 gttgaactgc cggatgcctt gtcggtaaag atgcggttag cttttacccc tgcatctttg 1681 agcgctctga tctgaatatc gagggactgc tggctggttg agacccgcgc ataaccaaaa 1741 attcgcataa aaatgtacct taaatcgaat atcagacacg atgtgtctat tatgccaaaa 1801 tgacgattta atggacactc aaacgaagcc gttttactat gtctgataat ttataatatt 1861 tcgaacggtt gcagttgtgt taaaaaagcc gtcaggcagg gaggccgata tgcccgttga 1921 ttttttgacc actgagcagg ttgagagtta tggcaggttc actggcgaac ccgatgaact 1981 tcagctggcg cgttattttc atcttgatga agcggataaa gaatttatcg ggaaaagccg 2041 gggtgatcac aatcgacttg gtattgccct gcaaatcggg tgtgtgcgtt ttctgggcac 2101 ttttcttact gacatgaatc atattccttc cggcgtccgg cattttaccg ccagacagct 2161 cgggattcgt gatatcaccg ttcttgcaga atacggtcag agggaaaata cccgccgtga 2221 gcatgcagcg ctgatacgtc agcactatca gtatcgtgaa tttgcctggc cctggacatt 2281 tcgccttacc cgtcttttat atacccggag ctggataagc aacgaacgtc ctggcctgct 2341 tttcgacctg gcgacagggt ggcttatgca acatcgtatt attctccccg gagccaccac 2401 gctgacccgg ttgatttcag aggtaaggga aaaggcgacg ttgcgcctgt ggaacaaact 2461 ggcactgata ccgtcagccg aacagcgttc acagctggag atgctgctgg ggccaactga 2521 ttgcagccgc ctgtctttac tggaatcact gaaaaaaggc cctgtgacca tcagtggtcc 2581 ggcgtttaat gaagcaattg aacgctggaa aactctgaac gattttggcc tgcatgctga 2641 aaacctgagt acactcccgg ctgtgcgcct gaaaaatctc gcacgttatg ctggtatgac 2701 ttcggtgttc aatattgcca ggatgtcacc gcagaaaagg atggcggttc tggttgcctt 2761 tgtccttgca tgggaaacgc tggcgctgga tgatgcactg gacgttctgg acgccatgct 2821 ggccgttatc atccgtgacg ccagaaagat tgggcagaaa aaacggctcc gctcgctgaa 2881 ggatctggat aaatctgcat tggcgctcgc cagcgcatgt tcgtacttgc tgaaagaaga 2941 aacaccggac gaatcgattc gtgctgaggt gttcagctac atccctaggc aaaagctggc 3001 tgaaatcatc acgcttgtcc gtgaaattgc ccggccctca gacgataatt ttcatgacga 3061 aatggtggag cagtacgggc gcgttcgtcg tttcctgccc catctgctga ataccgttaa 3121 attttcatcc gcacctgccg gggttaccac tctgaatgcc tgtgactacc tcagccggga 3181 gttcagctca cggcggcagt tttttgacga cgcaccaacg gaaatcatca gtcagtcatg 3241 gaaacggctg gtgattaaca aggaaaaaca tatcacccga aggggataca cgctctgctt 3301 tctcagtaaa ctgcaggata gtctgagacg gagggatgtc tacgttaccg gcagtaaccg 3361 gtggggagat cctcgtgcaa gattactaca gggtgctgac tggcaggcaa atcggattaa 3421 ggtttatcgt tctttggggc acccgacaga cccgcaggaa gcaataaaat ctctgggcca 3481 tcagcttgat agtcgttaca gacaggttgc tgcacgtctt ggcgaaaatg aggctgtcga 3541 actcgatgtt tctggcccga agccccggtt gacaatttct cccctcgcca gtcttgatga 3601 gccggacagt ctgaaacgac tgagcaaaat gatcagtgat ctgctccctc cggtggattt 3661 aacggagttg ctgctcgaaa ttaacgccca taccggattt gctgatgagt ttttccatgc 3721 cagtgaagcc agtgccagag ttgatgatct gcccgtcagc atcagcgccg tgctgatggc 3781 tgaagcctgc aatatcggtc tggaaccact gatcagatca aatgttcctg cactgacccg 3841 acaccggctg aactggacaa aagcgaacta tctgcgggct gaaactatca ccagcgctaa 3901 tgccagactg gttgattttc aggcaacgct gccactggca cagatatggg gtggaggaga 3961 agtggcatct gcagatggaa tgcgctttgt tacgccagtc agaacaatca atgccggacc 4021 gaaccgcaaa tactttggta ataacagagg gatcacctgg tacaactttg tgtccgatca 4081 gtattccggc tttcatggca tcgttatacc ggggacgctg agggactcta tctttgtgct 4141 ggaaggcctt ctggaacagg agaccgggct gaatccaacc gaaattatga ccgatacggc 4201 aggtgccagc gatcttgtct ttggcctttt ctggctgctg ggataccagt tttctccacg 4261 cctggctgat gccggtgctt cggttttctg gcgaatggac catgatgccg actatggcgt 4321 gctgaatgat attgccagag ggcaatcaga tccccgaaaa atagtccttc agtgggacga 4381 aatgatccgg accgcaggct ccctgaagct gggcaaagta caggcctcag tgctggtccg 4441 ttcattgctg aaaagtgaac gtccctccgg actgactcag gcaatcattg aagtggggcg 4501 catcaacaaa acgctgtatc tgcttaatta tattgatgat gaagattacc gccggcgcat 4561 tctgacccag cttaatcggg gagaaagccg tcatgcagtt gccagagcca tctgtcacgg 4621 tcaaaaaggt gagataagaa aacgatatac cgacggtcag gaagatcagt tgggagctct 4681 ggggctggtc actaacgccg tcgtgttatg gaacactatt tatatgcagg cagctctgga 4741 tcatctccgg gcgcagggtg aaacactgaa tgatgaagat atcgcacgcc tctccccgct 4801 ttgccacgga catatcaata tgctcggcca ttattccttc acgctggcag aactggtgac 4861 caaaggtcat ctgagaccat taaaagaggc gtcagaggca gaaaacgttg cttaacgtga 4921 gttttcgttc cactgagcgt cagacccc //