LOCUS Exported 4086 bp ds-DNA linear UNA 03-SEP-2020 DEFINITION IS1326_IS1353-AF071413. ACCESSION . VERSION . KEYWORDS . SOURCE natural DNA sequence ORGANISM unspecified REFERENCE 1 (bases 1 to 4086) AUTHORS LMB TITLE Direct Submission JOURNAL Exported Thursday, Sep 3, 2020 from SnapGene 5.1.5 https://www.snapgene.com FEATURES Location/Qualifiers source 1..4086 /organism="unspecified" /mol_type="genomic DNA" mobile_element 1..4086 /mobile_element_type="insertion sequence:IS1326::IS1353" /label=IS1326::IS1353 /note="Accession = IS1326_IS1353-AF071413; Family = IS21; Group = ; Synonyms = ; Partial = ; Transposition = ; OtherInformation = IS1326 interrupted by insertion of IS1353; Hosts:Organism = Shigella flexneri|Taxonomy = |BacGroup = |MolecularSource = plasmid NR1 (R100)|Region = |Country = Japan|OtherLocInfo =|DateIdentified = 1950s|First =; Capture = yes" repeat_region 1..26 /label=IRL (IS1326::IS1353) /note="Name = IRL; AssociatedElement = IS1326::IS1353; LibraryName = IRL (IS1326::IS1353); OtherInformation = 26 bp IR of IS1326; Capture = yes" mobile_element 29..1642 /mobile_element_type="insertion sequence:IS1353" /label=IS1353 /note="Accession = IS1353-AF071413; Family = IS3; Group = IS150; Synonyms = ; Partial = ; Transposition = ; OtherInformation = 99% identical to reference sequence for IS1353 (ISfinder:U40482); Hosts:Organism = Shigella flexneri|Taxonomy = |BacGroup = |MolecularSource = plasmid NR1 (R100)|Region = |Country = Japan|OtherLocInfo =|DateIdentified = 1950s|First =; Capture = yes" repeat_region 29..41 /label=IRR (IS1353) /note="Name = IRR; AssociatedElement = IS1353; LibraryName = IRR (IS1353); OtherInformation = terminal IR of IS1353; Capture = yes" CDS complement(57..1601) /codon_start=1 /gene="tnp" /product="Tnp" /function="transposase" /label=tnp (IS1353) /note="AssociatedElement = IS1353; Class = Transposase; Subclass = ; SequenceFamily = ; Chemistry = DDE; Target = ; LibraryName = tnp (IS1353); OtherInformation = ;Capture = yes" /translation="MYSYEDRLRAVRLYLKLGRRMSATLRQLGYPTKNSLKAWLAEFER NQDLRRGYQRIKRQYTDEQKQRAVDHYIEQGYCLSHTIRSLGYPSREALRAWIRDLRPE FARTVVGSSAPTVARSRLEKQQAVIALNLRVGSAKDVADTVGVSRPTLYNWQHRLLGKV PLKPMTKKKGDTSLEQRHEALLRELAELESQNQRLRMENAILEKASELIKKDMGINPLE LTSREKTKVVDALRVTFPLANLLCGLKLARSTYFYQRLRQTRPDKYTQVREVIRTIFED NYRCYGYRRIDSALRLGGMRVSEKVVRRLMAQERLVVRTPRRRRFSAYAGDPTPAVPNL LNRDFHASAPNTKWLTDLTEIHIPAGKVYVSPIVDCFDGLVVAWNIGTSPDANLVNTML DHAVRTLRPGEHPVIHSDRGSHYRWPAWIRRTENAQLTRSMSKKGCSPDNAACEGFFGR LKTELIYPRNWQHVTLKDLMTRIDAYIHWYNERRIKVSLGGRSPIEYRHAVGLMSV" repeat_region complement(1631..1642) /label=IRL (IS1353) /note="Name = IRL; AssociatedElement = IS1353; LibraryName = IRL (IS1353); OtherInformation = terminal IR of IS1353; Capture = yes" CDS 1724..3247 /codon_start=1 /transl_table=11 /gene="istA" /product="IstA" /label=istA (IS1326::IS1353) /note="AssociatedElement = IS1326::IS1353; Class = Transposase; SequenceFamily = ; Chemistry = DDE; Target = ; LibraryName = istA (IS1326::IS1353); OtherInformation = ; Capture = yes" /protein_id="AAC33917.1" /translation="MINVAILSAIRRWHFRDGASIREIARRSGLSRNTVRKYLQSKVVE PQYPARDSVGKLSPFEPKLRQWLSTEHKKTKKLRRNLRSMYRDLVALGFTGSYDRVCAF ARQWKDSEQFKAQTSGKGCFIPLRFACGEAFQFDWSEDFARIAGKQVKLQIAQFKLAHS RAFVLRAYYQQKHEMLFDAHWHAFQIFGGIPKRGIYDNMKTAVDSVGRGKERRVNQRFT AMVSHYLFDAQFCNPASGWEKGQIEKNVQDSRQRLWQGAPDFQSLADLNVWLEHRCKAL WSELRHPELDQTVQEAFADEQGELMALPNAFDAFVEQTKRVTSTCLVHHEGNRYSVPAS YANRAISLRIYADKLVMAAEGQHIAEHPRLFGSGHARRGHTQYDWHHYLSVLQKKPGAL RNGAPFAELPPAFKKLQSILLQRPGGDRDMVEILALVLHHDEGAVLSAVELALECGKPS KEHVLNLLGRLTEEPPPKPIPIPKGLRLTLEPQANVNRYDSLRRAHDAA" CDS 3234..4019 /codon_start=1 /transl_table=11 /gene="istB" /product="IstB" /function="stimulates transposition" /label=istB (IS1326::IS1353) /note="AssociatedElement = IS1326::IS1353; Class = Accessory Gene; Subclass = ATPase Transposition Helper; Target = ; SequenceFamily = ; Chemistry = ; LibraryName = istB (IS1326::IS1353); OtherInformation = ; Capture = yes" /protein_id="AAC33916.1" /translation="MMQHEGHVRILKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLI KAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFSQSLVNEATVKQLHRCDFMEQAQNVVL IGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYAD LVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLD RLTHHCHILETGNESYRFKHSSTQNKQEEKQTRKLKIET" repeat_region complement(4061..4086) /label=IRR (IS1326::IS1353) /note="Name = IRR; AssociatedElement = IS1326::IS1353; LibraryName = IRR (IS1326::IS1353); OtherInformation = 26 bp IR of IS1326; Capture = yes" ORIGIN 1 tgttgagttg catctaaaat tgacccactg ggggtgcgga cgatttcttg gacggtttat 61 acggacatca atccgaccgc atgacgatac tcgatgggac tacgcccgcc aagcgacact 121 ttgatgcggc gctcgttgta ccagtggata taggcatcga ttcgcgtcat gaggtctttc 181 agcgtcacgt gctgccaatt cctcgggtag attagttcgg tcttcaatcg tccgaaaaag 241 ccctcgcatg cagcattgtc tggcgagcag ccctttttgg acatcgaccg cgttaattgg 301 gcattttcag tgcggcggat ccacgcaggc cagcgataat gcgagcccct gtccgaatgg 361 ataaccggat gctcaccggg tcgcagtgtc cgtaccgcgt gatccagcat ggtattgacc 421 aggttcgcat ccgggctggt gccgatattc caggccacca ccagcccatc gaagcaatcg 481 acgatcggcg agacgtagac cttccctgcc ggaatgtgta tttccgtcag atcggtcaac 541 catttcgtat tcggcgccga cgcgtgaaag tcgcgattca gcagattcgg gaccgctggt 601 gtcgggtcgc cagcatacgc cgagaagcgc cggcggcgcg gtgttctcac gaccagacgc 661 tcttgcgcca tcaagcgacg cacgaccttc tcggacacac gcatgccacc aaggcgcaag 721 gcactatcaa tgcgtcgata gccatagcag cggtagttgt cctcgaagat agtccgaatg 781 acctcacgca cctgcgtgta cttgtcgggc cgcgtctgcc gcaggcgttg atagaagtat 841 gtgctgcgcg ccagcttcag gccgcacaac agattggcta atggaaacgt gactctgagg 901 gcatcaacca ccttcgtttt ttctcggctt gtcagttcga gggggttgat gcccatgtct 961 ttttttatca attcactcgc cttctccaga attgcattct ccatgcgaag ccgctggttc 1021 tggctctcca gttcggccag ttccctgagt agtgcctcat gccgctgctc gagcgaggtg 1081 tcacctttct tctttgtcat gggttttagg ggcactttgc caagtaatcg atgctgccag 1141 ttatacaacg ttggtcgcga tacaccgaca gtgtcggcca catcctttgc cgaacctacg 1201 cgcaggttca gtgcaatgac ggcttgctgc ttctcgaggc gagagcgggc gactgtggga 1261 gcgctgctgc cgacgaccgt cctagcgaat tcagggcgta aatcacggat ccaggcacgc 1321 aaggcctcgc ggcttgggta gcccaggctt cggattgtgt gactcaggca gtagccttgt 1381 tcgatatagt gatctactgc ccgttgcttt tgctcatcgg tgtactgccg ttttatccgt 1441 tgatagcctc ggcgaagatc ctgattccgt tcgaattctg ccaaccaggc cttcagcgag 1501 ttcttggtgg ggtatcccag ctgccgtagt gtggcgctca tccggcgccc aagcttcagg 1561 tacaacctca cggctcgaag gcgatcttca tacgaataca tgaactactc ctaaagtagt 1621 ccaagatttt gtccgcaccc caacttaggg taaagatttg cgtcgaaatt tgacccacgt 1681 atgacactgt ttcccgtctg gatatggcgg gagaaatcaa ggagtgataa acgtggcgat 1741 attgagcgca attcgacgct ggcattttcg cgatggtgcg tcgattcggg aaatagcccg 1801 acgaagcggc ctgtccagga acaccgttcg caagtatttg caaagcaagg tggttgaacc 1861 gcagtaccca gcgcgagaca gcgttggcaa gttaagtcct tttgagccca agttaaggca 1921 gtggctctcc accgagcaca aaaagacaaa gaagctgcgc agaaacctgc gcagcatgta 1981 ccgggatttg gtcgctttgg gctttaccgg gtcttatgac cgagtgtgtg cctttgcccg 2041 acagtggaaa gattccgaac agttcaaggc gcaaacctcg ggcaagggtt gtttcatccc 2101 cttgcgcttt gcttgtggcg aagccttcca attcgattgg agtgaggact ttgcccgcat 2161 agcgggcaaa caggtcaaac ttcagattgc ccagtttaag ttggcccaca gccgggcctt 2221 tgtgcttcgg gcttactacc agcaaaaaca tgaaatgctg tttgatgccc actggcatgc 2281 ctttcaaatc ttcggtggca ttcccaagcg cggcatctac gacaacatga agaccgctgt 2341 ggattcggtg gggcgtggca aagagcgcag ggtcaatcag cggttcactg ccatggtcag 2401 ccactacctg tttgatgcgc agttctgtaa tccagcatcg ggttgggaga aaggccagat 2461 tgagaagaac gtgcaggatt cccgccaacg cctgtggcaa ggggcaccag actttcaaag 2521 ccttgctgat ttgaatgtgt ggcttgagca tcgctgcaaa gcgctgtggt ctgagctgcg 2581 ccaccccgaa ttggaccaaa ccgtgcaaga ggcctttgcc gatgaacaag gcgagttgat 2641 ggcgctaccc aatgcctttg atgcattcgt ggagcaaacc aagcgagtca cttcaacctg 2701 ccttgttcac cacgagggca atcgctacag cgttcctgcc agttacgcca acagggccat 2761 cagccttcgg atttatgcag acaagctggt gatggctgcc gaaggccaac acattgccga 2821 gcatccaaga ttgtttggca gtggccacgc tcggcgtggc cacacacaat acgactggca 2881 ccattacttg tctgtgcttc agaagaaacc tggggcgttg cgcaatggtg cgccatttgc 2941 tgaattgcca cccgcgttca agaagcttca atccatcttg ctgcaacgcc ccggcggtga 3001 ccgtgacatg gtggaaattc tggcccttgt attgcaccac gatgaaggtg cggtactcag 3061 tgctgtggaa ttggcattgg agtgtggcaa gccatcgaag gagcatgtgc ttaatctgtt 3121 gggacgtttg accgaagaac ctccacccaa accgattcca attcccaagg ggttaaggct 3181 gacattggaa ccacaggcca acgtgaaccg ctatgacagt ttaaggagag cccatgatgc 3241 agcatgaagg ccatgtgaga atcctcaaat ccttgaaact ctttggcatg gcacacgcca 3301 ttgaggagtt gggcaatcag aattcaccag catttaatca agccttgccc atgctggaca 3361 gcttgattaa agctgaagtg gcagagcgtg aagtacgttc ggtgaactat caattgcggg 3421 tggccaagtt ccccgtgtat cgggacttgg tgggctttga cttcagtcaa agcctggtta 3481 atgaggccac ggtcaaacaa ttgcaccggt gcgacttcat ggaacaagcc cagaacgtgg 3541 tgctgattgg tgggccaggc acaggcaaga ctcacctggc cacagccatt ggtacacaag 3601 cagtgatgca cttgaaccga cgggtgcgtt tcttctccac cgtggatttg gtcaatgcac 3661 tggagcaaga gaaatcatct gggcgtcagg gacaaatcgc aaaccgtctg ttgtatgccg 3721 atttggtgat tctggatgag ctgggatatt tgccttttag ccaaaccggt ggggcactgc 3781 tgtttcacct gctctcaaag ctgtacgaaa aaaccagcgt gatactgacc accaacttga 3841 gcttctcgga atggagccga gtgtttggcg atgaaaagat gacaacagcg ttgttggacc 3901 gactaaccca ccactgccac atcctggaaa ccggcaatga aagttaccgc ttcaaacaca 3961 gttcaactca gaataagcag gaggaaaaac agacccgcaa actgaaaatc gagacataat 4021 tctgacaaca aggggtgggt caaaattcaa tgcaaatccc gggtcaaatt tgggtgcaaa 4081 tcaaca //