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Name: TnXc5 (Synonyms: Tn7214) |
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Family: Tn3 Group: Tn3 |
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Evidence of Transposition: no |
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Host |
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Host Organism: | Xanthomonas campestris pv. citri XAS450 1 | | |
| | Date of Isolation: | 1989 |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 38 bp) | | GGGGTTCGGGGAGCAATGGAACAGGGAAGTCAGTTAAG |
IRR (Length: 39 bp) | | GGGTTCGGGGAGCAATGGAACAGGGAAGTCAGTTAAGCC |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTTCGGG GAGCAATGGA ACAGGGAAGT CAGTTAAGCC TTCACCAGTG CCGGTCTGTA CCTTCCATGC GGGCGTGGCT CTCTGAGAAA CAGTGGCGGT 100
CATCCGCACC GCAGGCGATG TCGGTTAGCA AATCGTTCAC GGCTTCATCC AGCTCTTCAT CCGTGTCATA GGGCACCTTC AGTTCATATT CCCCGTTCGG 200
CCGCCGCGTG GCATCGTATT GGGCAAGATC AAAAAACTCG ACATGCTCGA TCGAGCGCTT CTTTCCGCGC ACGAACTTGC TATTGTTCTC GATGCGCAAG 300
GTCAGCAGGA TGGTGGCGAC CTTCGGCTGG TCAGCGTTTC CGCTCTCGAC CACGGAGACG TTTATCGGCG ACTGCGCCGA TTGTTTGTAC GGGCCGATCT 400
CTACGCCGCG ATGCCGCAGG TAGCTGTACA GCGTGCTCTT GGACAAGTGC AGTTTCTGCG CAATGGCAGC GACCGACAGC TTGCGCTCGC GGTATAGGGT 500
CTCGGCCGCC AGCGCTGTCG CTTCGGCCTG CGGCGACAGG CCCTTGGGTC GCCCACCGAC CCTGCCACGC GCCCGCGCGG CCGTCAGCCC GGCCTGGGTG 600
CGCTCGCGAA TTAGCTCGCG CTCGAACTCG GCCAGCGTGG CGAACAGGTT GAACACGAAC CGCCCTTGGG CGCTGGTGGT GTCGATGGGG TCATTCAGGC 700
TGAGCAGCCC GACCTTGCGT TCCATCAGGC TACCCACCAA CTCAACCAGG TGCTTGAGTG AGCGTCCCAT GCGGTCGAGT TTCCAGATCA CCAGCACGTC 800
GCCGCCACGC AACTGGCCCA GCAGTTCATC GAGCGCTGGG CGCGCGGTCT TCGCGCCGCT CGCAACGTCC TGATAAATGC GCTCGCAGCC GGCCGCCTTG 900
AGGGAGTCCA CCTGCAAGGC TGGGTTCTGT TCGCGCGTGG ATACGCGCGC ATAGCCGATT TTCATCGTAA TATTTTGCTT TACTCGTTAA TTTTTAATAA 1000
TATCAAACTT TGATTGTACA AACCACTATT ACAGACTGCT TGTTGGCTTA CGGACACCTC GCGCCGATCG CCCCATCAGA GTTCATAAAA ACGATCGTTT 1100
TATTGAACCG TTGCAAAAAA AACCGCTTAA AGAGTGTATA AACACCGATG TGCATAAACT CTGATTGGAG AGAGCTTCAT GAATACCGTG CGCTGGAACA 1200
TCGCCGTATC GCCGGACGTG GATCAGTCCG TCCGCATGTT CATCGCCGCG CAAGGCGGCG GTCGCAAGGG CGACCTGTCA CGCTTCATCG AGGATGCGGT 1300
GCGCGCCTAC CTCTTCGAGC GGGCTGTGGA ACAAGCCAAA GCCGCTACGG TGGGTATGGG TGAGACAGAA CTGAACGACC TCATTGATGA GGCGGTGCAA 1400
TGGGCGCGTG AGCATTAATG CGGGTCGTCC TCGACACCAA CGTATTGCTG GCCGCGCTGA TCTCGTCGCA CAGCCCACCC GACATCATCT ATCGCGGTTG 1500
GCTTGCAGCA CGCTTTGAAC TGGTGACAGG GACGGCGCAG CTTGATGAAC TGCGCCGCGT GAGCCGTTAC CCGAAGATCA AGGCAATCCT GCCCGCGCAT 1600
CGCGTCGGCA CGATGATCAA CAACATGCAG CGCGCCGTTG TGCTGCATGT ATTGCCGCCT CTGCCTGATC GCATCGAGGT CAATGATCCG AACGATGCGT 1700
TCCTGCTGGC GATGGCACTG GCCAGCGAGG CCGATTACCT TGTGACTGGC GACCGCCGCG CTGGGCTGCT GCAACGCGGT AGCATTGGCC GCACGCGCAT 1800
CGTCACGCCA GTCACCTTCT GCGCCGAGGC GCTTTGACGC CATGCCGGTC AGCTTCCTGT CCACCACACA ACGGGAACGC TACGGCCGCT ATCCAGACAC 1900
GCTTTCCAGC GAAGAGCTGG CGCGCTATTT CCACCTGGAC GACGATGACC GCGAGTGGAT CGCCACCAAG CGACGCGACA GCAGTCGCCT CGGTTATGCG 2000
CTGCAACTGA CCACGGCGCG GTTTCTCGGC ACCTTTCTGG AAGACCCTAC CGCCGTGCCA AGCCCGGTGC TGCATACGCT GTCGTCGCAA CTTGGCATCG 2100
CCGACCCTTC CGATTGCGTC ATTGACTACC GGACAACTCG GCAGCGCTGG CAGCACACGA GCGAGATTCG CACCCGCTAT GGCTACCGCG AGTTCACGGG 2200
TACCGGCGTC CAGTTCCGCC TTGGCCGCTG GTTGTGCGCG TTGTGCTGGA CGGGCACTGA CCGCCCGAGT GCGCTGTTCG ACTACGCCAA CGGCTGGCTG 2300
GTCGGCCACA AGGTGCTGCT ACCCGGCGTC ACCTTGCTGG AGCGCTTTAT CGCCGAGATA CGCTCACGCA TGGAGTCGCG TCTGTGGCGA CTACTGGTGC 2400
ACGGCGTGAC ACCCGAGCAG CGACAACGCC TCGATGACTT GCTCAAGCTT GTCGAAGGCA GCCGGCAGTC TTGGCTGGAT CGATTGCGCA AGGGGCCGGT 2500
ACGCGTCAGC GCTCCGGCGC TCGTTGCGGC CTTGCTGCGA ATCGAAACCG TGCGTGGCTT GGGCATTAAG CTGCCAGGCA CCCATGTGCC GCCGAGCCGC 2600
ATCGCAGCGC TGGCCCGCTT CGCCAGTACT GCCAAGGTAT CCGCCGTGGC TCGATTGCCG GAGGTGCGAC GCATCGCCAC GCTAGTGGCC TTCGTCCACT 2700
GCCTGGAAGC CAGCGCGCAA GACGATGCCA TCGATGTGCT CGACCTGCTG CTGCGCGAGC TGTTCACCAA GGCTGAGAAA GAAGATCGTA AGGTCAGGCA 2800
GCGCTCCCTC AAGGATCTGG ATCGGGCCGC CTCGACGCTG GCCGAGGCAT GCCGGATGCT GCTCGATCCG GCCCTGCCGG ACGGCGAACT GCGCGAGCGC 2900
GTCTATGCCG CCATCGGCCA CGATGAACTG GCCCAGGCGC TCAATGAAGT GCGCGGTCTG GTGCGCCCGC CCAACGATGT GTTCTACACC GAACTGGAAG 3000
CCCGCAAGGC CACCGTCTCG CGCTTCCTGC CGGCGTTGCT GCGCGTCATC CGCTTTGACG CCAATCCGGC CGCGCAACCT TTGGCGCAGG CGTTGCAATG 3100
GCTGCATGAG AAGCCCGACC ATGATCCGCC CACGGCCATC GTCGGCAAGG CGTGGCAACG CCATGTCGTT CAGGATGATG GCCGCATCAA TGCCACAGCC 3200
TATTCGTTCT GCGCGCTCGA CAAGCTGCGC AGTGCGATTC GCCGCCGCGA CGTGTTCATC AGCCCGAGTT GGCGCTACGC CGATCCACGC GCCGGGCTGC 3300
TGGCCGGAGC TGAATGGGAG GCCTCGCGGC CTATCGTCTG CCGCTCGCTG AGCCTGTCGG CGCAGCCCGA GGCCACGTTG TCCGAGCTGA CGCGCGAGCT 3400
GGACGAAACC TACCGCCGCG TCGCCGCGCG CCTGCCCCAG AACGACGCAG TGCGCTTCGA GAACGTTGGC GACAAGACGG AACTGGTGCT CAGTCCGCTT 3500
GAAGCATTGG AGGAGCCGCC TTCATTGATC GCGCTGCGCA ACGAAATCAA GGCGCGCATG CCGCGCGTCG ATCTTCCGGA AATCCTGCTG GAAGTCGCCG 3600
GTCGTACTGG CTGCATGGAA GCGTTCACGC ACCTGACTGA ACGCACCGCG CGCGCGGCCG ACCTGACCAC CAGCCTGTGC GCGGTGCTGA TGGCCGAAGC 3700
CTGCAACACC GGCCCGGAAC CACTGGTGCG GCCAGACACT CCGGCGCTCA AGCGCGACCG GCTGATGTGG GTCGATCAGA ACTATGTGCG TGACGACACG 3800
CTGACAGCCT GCAATGCCGT GCTGGTGGCC GCGCAAAGTC GTATCGCACT GGCGCGAACC TGGGGAGGTG GCGATGTGGC TTCGGCCGAC GGCATGCGAT 3900
TCGTGGTGCC GGTGCGCACG ATCCACGCTG GACCGAACCC AAAGTATTTC AATCGCGGGC GCGGCGTCAC TTGGTACAAC TTGCTTTCCG ATCAGCGCAC 4000
CGGACTGAAC GCGATCACTG TGCCTGGCAC GCTGCGCGAC AGTTTGATTT TGCTAGCGGT TGTGCTGGAG CAGCAAACGG AGTTGCAGCC GACCCAGATC 4100
ATGACCGACA CCGGCGCGTA CAGCGATTTG GTGTTCGGTT TGTTCCGCCT CTCCAACTAT CGATTCTGCC CGCGCCTGGC CGATGTTGGC GGTACCCGTT 4200
TCTGGCGCGT CGATCCCGAC GCCGACTATG GCGACCTCAA TGCGCTGGCC CGGCAGCGTG TGAATCTCGA CCGTATCACC CCGCATTGGG ATGATGTGCT 4300
GCGTCTGGTC GGCTCGCTCA AGCTCGGTCT GGTTCCGGCG ATGGGCATCA TGCGCACCTT ACAGGTCGAT GAACGGCCCA CCAGCCTGGC GCAAGCCATC 4400
GCCGAAATCG GCCGTATCGA CAAGACCATC CACACGTTGA ATTTCATCGA CGACGAAGCC CGCCGTCGCG CCACGCTGCT GCAACTGAAT CTCGGTGAAG 4500
GCCGCCACAG CCTGGCGCGC GAGGTTTTCC ACGGCAAGCG CGGCGAGCTG TTCCAGCGCT ACCGCGAAGG GCAGGAAGAC CAGTTGAGCG CGCTCGGCCT 4600
GGTCGTGAAC ATGATCGTGC TTTGGAACAC GCTGTACATG GATGCGGTGC TGACGCAGTT GCGCAGCGAA GGCTACCCCG TGAAGCCAGA AGACGAGGCA 4700
CGGCTGTCGC CGTTCGGCCA CGAGCACATC AACATGCTCG GACGCTATTC GTTCTCGGTG CCGGAAGCTG TCGCGCGCGG CGAGCTGAGA CCGTTGACCA 4800
AACCGAATGA TCCTTAAAAA CCTTGGAGAT TCACCATGCA ACAAATGACG CAACAACCGT TGAACGATGC CCAGCTTGAT CGGCTGGGCG ACTTTCTCGA 4900
AGGAGTCGGC GCACCTGCAA TGAATCTCGA AATGCTCGAT GGGTTCTTTG CCGCACTCAT TTGTGGTCCA GAAACTGAGG TTTCCCCACA TTTCTTCCTG 5000
CGAGATCAAG CGCTTGGTGG GCCAGGCGGT GGAAGAAGGT GCGCGCATGG GGCACGCTTC AAGGTGATTA AGCCAGAGAA GAGTGCCGAC CATGCGCGCC 5100
AGCGAAGTAT TGCAGAAGTG CCTGTCTAAC TCACTCTCCG GGATGCATGC GTTACGCCAA CGTACCTTGC TGGGCGCGGT TGAAGCGCTA GTGCACGGGG 5200
GCCGACTGAC GCTGATCGAC ATCGCACGCG CGTGGCCTGG CGCGACGCGG GTACGTGCGC CCCTCAAGGC ATGCGACCGC CTGCTGTGCA ATCGCACGTT 5300
GCAGGCCGAG CGATCCATGA TCGAGCGGGA CATGGCGCAT TGGCTGTTGC GCGGCGACCA GCCGGTGATC GTCATCGACT GGAGCGATTT GAAGCCGGAC 5400
AAGTCATGGT GTCTGCTGCG CGCAGCCGTG CCGATCGGTG GACGCACACT CACCTTGCTG GACATGGTGG TTGCCGGGAA ACAGCAGGGA TCGCCCGGCG 5500
CGGAAAAACG CTTCTTGCAA CAGCTCAGGC GAATGATTCC AGACGATGTG CGTCCGATCC TGGTCACGGA CGCCGGATTC CGCACGCCAT GGTTTCGCGC 5600
GGTGTCGGCG ATGGGCTGGG ATTGGGTCGG GCGTCTTCGC GGACGCACGC AGGTCAAACC GCAAGACGTG CCCGATGATG CAGCGCAATG GATCGATAGC 5700
CGACGCCTGC ATGCATTGGC GTCCAACCGT GCATGCGAAT TGCCACCGAT GCAGGCCAAT CGCAGTGATC CACTCGATTG CCGTCTGGTG CTCTATGCCA 5800
AGACACGTCT GGGACGTCAG CAACGCAACC GCCGCTCGCC AGCGAAGGTC TCGCGTGCAT CCTCCAGCTT GAAAGCAGCG GCGCGTGAAC GCGAGCCGTG 5900
GTTGATCGTT GCCTCCCCAC AGTTACAAGC ACCCAGCGCG AAACACTTGG TCAATCTGTA CGCACGAAGG ATGCAGATCG AGCTGGCATT TCGTGATCTG 6000
AAGTCGCATC GCTACGGTCA GGCGATGGAA GACAGCCTGA CCCGTCGCGG CGAGCGGTTG CAGATCCTGT TGTTGCTCAA CACACTGGCC ACCTTTGCCA 6100
GTTGGCTGGC AGGACTGGGA TGCGAAGCCA CCGGTATCGC CCAGTGGCTA TCGCCACGCA GCAGTACACG CAAGCTCTAC TCGACACTGC GTGTCGGCCG 6200
CCAGGCGCTG GCCAGGCGCT GGCCGATGGA ACCTGTCTCA CGCTGGCTAG AACGCTTACG TACACTGCCC GAAGCAGTGC GTGAGCAGAT GACGCTGGTG 6300
CTTTAAAAAC GTGGGGATAC CTAAGGTCCA GAAACGGTTT TGCCCAGCGA ACACTTGCCA CAAGTATTCG GGGAAGACCA TTGCTTCGAC AGCAATGACC 6400
AAGCCGCCGA AATTCTTGGC TTGGTCATGC GGCACTGGAA CACGATTGCA TCAGAATTGT TCCGCACTCT GGAGAAAGAC GATGTCTACC TTCCCGTGCT 6500
ACTCGAAGAT GCGGATGGGG CCGTACACGG TAACGACTGG GCACGTGGTT TCATGCGCGG CATTCAATTA CGGCCCAATA GTTGGCAAGA GTTGATCGGC 6600
AGCGAAGAAT TTGGCGGGCC CATGCTGCCA ATCATGATCT TGACCCATGA ACATGATCCT GATCCCGCCA TGCGCCCGCC AGAGATTGCG CCGGACAAAC 6700
GCGATGAGTT GCTTCAGTCC CTGATTGCCG GACTGACGCA CATCTATCGC TACTTTGCCT CACATCGCCA ATTGGCAACC CAAGGGCCTT TACGCAGACA 6800
AGGTCCTAAG ATTGGGAGAA ATGATCAGTG CCCATGTGGC AGTGGGCGGA AGTACAAGCA TTGCTGTGCT ACCAGCGCTC CGACATTTCA TTGATACCGG 6900
CTTAACTGAC TTCCCTGTTC CATTGCTCCC CGAACCCC
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Recombination Sites |
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Name |
Coordinates |
Gene |
Sequence |
res |
973-1112 |
140 |
TTTTGCTTTA CTCGTTAATT TTTAATAATA TCAAACTTTG ATTGTACAAA CCACTATTAC AGACTGCTTG TTGGCTTACG GACACCTCGC GCCGATCGCC CCATCAGAGT TCATAAAAAC GATCGTTTTA TTGAACCGTT |
res_site_III |
973-1001 |
29 |
TTTTGCTTTA CTCGTTAATT TTTAATAAT |
res_site_II |
1005-1040 |
36 |
AAACTTTGAT TGTACAAACC ACTATTACAG ACTGCT |
res_site_I |
1080-1112 |
33 |
AGTTCATAAA AACGATCGTT TTATTGAACC GTT |
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
tnpR |
TnXc5 |
42-965 |
Accessory Gene |
Resolvase |
- |
RHH_6 |
TnXc5 |
1179-1418 |
Passenger Gene |
Antitoxin |
+ |
PIN_3 |
TnXc5 |
1418-1837 |
Passenger Gene |
Toxin |
+ |
tnpA |
TnXc5 |
1842-4817 |
Transposase |
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+ |
secC 5'-end |
TnXc5 |
4836-4975 |
Passenger Gene |
Plant Pathogenicity |
+ |
tnp |
ISXac1 |
5092-6306 |
Transposase |
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+ |
secC 3'-end |
TnXc5 |
6326-6894 |
Passenger Gene |
Plant Pathogenicity |
+ |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
TnXc5 |
924 |
42-965 |
- |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MKIGYARVST REQNPALQVD SLKAAGCERI YQDVASGAKT ARPALDELLG QLRGGDVLVI WKLDRMGRSL KHLVELVGSL MERKVGLLSL NDPIDTTSAQ GRFVFNLFAT LAEFERELIR ERTQAGLTAA RARGRVGGRP KGLSPQAEAT ALAAETLYRE RKLSVAAIAQ KLHLSKSTLY SYLRHRGVEI GPYKQSAQSP INVSVVESGN ADQPKVATIL LTLRIENNSK FVRGKKRSIE HVEFFDLAQY DATRRPNGEY ELKVPYDTDE ELDEAVNDLL TDIACGADDR HCFSESHARM EGTDRHW
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
RHH_6 |
RHH_6 |
TnXc5 |
240 |
1179-1418 |
+ |
Class: | Passenger Gene |
Sub Class: | Antitoxin |
Sequence Family: | RHH_6 (Pfam:PF16762) |
Protein Sequence:
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MNTVRWNIAV SPDVDQSVRM FIAAQGGGRK GDLSRFIEDA VRAYLFERAV EQAKAATVGM GETELNDLID EAVQWAREH
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
PIN_3 |
PIN_3 |
TnXc5 |
420 |
1418-1837 |
+ |
Class: | Passenger Gene |
Sub Class: | Toxin |
Target: | single stranded RNA |
Sequence Family: | PIN_3 (Pfam:PF13470) |
Comment: | tRNA(fMet)-specific endonuclease |
Protein Sequence:
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MRVVLDTNVL LAALISSHSP PDIIYRGWLA ARFELVTGTA QLDELRRVSR YPKIKAILPA HRVGTMINNM QRAVVLHVLP PLPDRIEVND PNDAFLLAMA LASEADYLVT GDRRAGLLQR GSIGRTRIVT PVTFCAEAL
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
TnXc5 |
2976 |
1842-4817 |
+ |
Class: | Transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MPVSFLSTTQ RERYGRYPDT LSSEELARYF HLDDDDREWI ATKRRDSSRL GYALQLTTAR FLGTFLEDPT AVPSPVLHTL SSQLGIADPS DCVIDYRTTR QRWQHTSEIR TRYGYREFTG TGVQFRLGRW LCALCWTGTD RPSALFDYAN GWLVGHKVLL PGVTLLERFI AEIRSRMESR LWRLLVHGVT PEQRQRLDDL LKLVEGSRQS WLDRLRKGPV RVSAPALVAA LLRIETVRGL GIKLPGTHVP PSRIAALARF ASTAKVSAVA RLPEVRRIAT LVAFVHCLEA SAQDDAIDVL DLLLRELFTK AEKEDRKVRQ RSLKDLDRAA STLAEACRML LDPALPDGEL RERVYAAIGH DELAQALNEV RGLVRPPNDV FYTELEARKA TVSRFLPALL RVIRFDANPA AQPLAQALQW LHEKPDHDPP TAIVGKAWQR HVVQDDGRIN ATAYSFCALD KLRSAIRRRD VFISPSWRYA DPRAGLLAGA EWEASRPIVC RSLSLSAQPE ATLSELTREL DETYRRVAAR LPQNDAVRFE NVGDKTELVL SPLEALEEPP SLIALRNEIK ARMPRVDLPE ILLEVAGRTG CMEAFTHLTE RTARAADLTT SLCAVLMAEA CNTGPEPLVR PDTPALKRDR LMWVDQNYVR DDTLTACNAV LVAAQSRIAL ARTWGGGDVA SADGMRFVVP VRTIHAGPNP KYFNRGRGVT WYNLLSDQRT GLNAITVPGT LRDSLILLAV VLEQQTELQP TQIMTDTGAY SDLVFGLFRL SNYRFCPRLA DVGGTRFWRV DPDADYGDLN ALARQRVNLD RITPHWDDVL RLVGSLKLGL VPAMGIMRTL QVDERPTSLA QAIAEIGRID KTIHTLNFID DEARRRATLL QLNLGEGRHS LAREVFHGKR GELFQRYREG QEDQLSALGL VVNMIVLWNT LYMDAVLTQL RSEGYPVKPE DEARLSPFGH EHINMLGRYS FSVPEAVARG ELRPLTKPND P
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
secC 5'-end |
N |
TnXc5 |
140 |
4836-4975 |
+ |
Class: | Passenger Gene |
Sub Class: | Plant Pathogenicity |
Comment: | interrupted by ISXac1 insertion |
Protein Sequence:
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MQQMTQQPLN DAQLDRLGDF LEGVGAPAMN LEMLDGFFAA LICGPE
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnp |
Tnp |
ISXac1 |
1215 |
5092-6306 |
+ |
Class: | Transposase |
Function: | transposition |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MRASEVLQKC LSNSLSGMHA LRQRTLLGAV EALVHGGRLT LIDIARAWPG ATRVRAPLKA CDRLLCNRTL QAERSMIERD MAHWLLRGDQ PVIVIDWSDL KPDKSWCLLR AAVPIGGRTL TLLDMVVAGK QQGSPGAEKR FLQQLRRMIP DDVRPILVTD AGFRTPWFRA VSAMGWDWVG RLRGRTQVKP QDVPDDAAQW IDSRRLHALA SNRACELPPM QANRSDPLDC RLVLYAKTRL GRQQRNRRSP AKVSRASSSL KAAAREREPW LIVASPQLQA PSAKHLVNLY ARRMQIELAF RDLKSHRYGQ AMEDSLTRRG ERLQILLLLN TLATFASWLA GLGCEATGIA QWLSPRSSTR KLYSTLRVGR QALARRWPME PVSRWLERLR TLPEAVREQM TLVL
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
secC 3'-end |
N |
TnXc5 |
569 |
6326-6894 |
+ |
Class: | Passenger Gene |
Sub Class: | Plant Pathogenicity |
Comment: | interrupted by ISXac1 insertion |
Protein Sequence:
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VQKRFCPANT CHKYSGKTIA STAMTKPPKF LAWSCGTGTR LHQNCSALWR KTMSTFPCYS KMRMGPYTVT TGHVVSCAAF NYGPIVGKS* SAAKNLAGPC CQS*S*PMNM ILIPPCARQR LRRTNAMSCF SP*LPD*RTS IATLPHIANW QPKGLYADKV LRLGEMISAH VAVGGSTSIA VLPALRHFI
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Internal Transposable Elements (TE) |
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TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
ISXac1-NC_003919 |
ISXac1 |
Insertion Sequence |
4976-6325 |
1350 |
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Internal Repeat Elements |
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Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
IRL |
ISXac1 |
4976-5025 |
TGAGGTTTCC CCACATTTCT TCCTGCGAGA TCAAGCGCTT GGTGGGCCAG
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IRR |
ISXac1 |
6276-6325 |
TCACGCACTC GTCTACTGCG ACCACGAAAT TTTTGCACCC CTATGGATTC
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References |
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Liu CC, Wang HR, Chou HC, Chang WT, Tu J. Analysis of the genes and gene products of Xanthomonas transposable elements ISXc5 and ISXc4. Gene. 1992 Oct 12;120(1):99-103. doi: 10.1016/0378-1119(92)90015-h. PubMed ID: 1327971
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