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Internal Transposable Elements | |
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Internal Repeats | |
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| Name: TnXax1 (Synonyms: Tn7206) |
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| Family: Tn3 Group: Tn4651 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Xanthomonas axonopodis pv. citri str. 306 | Molecular Source: | plasmid pXAC64 |
| | Date of Isolation: | 2017 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 46 bp) |  | GAGGGTCGGCAGGGATTCGTGTAAAACACAGCCAAAAGTGAGCTAA |
| IRR (Length: 45 bp) | | GAGGGTCGACAGGGATTTGTGTAAAAAACAGCCAAAATTGAGCTA |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GAGGGTCGGC AGGGATTCGT GTAAAACACA GCCAAAAGTG AGCTAACTCC CTGTCAGCTA AGGATTCCTC ACGACGCCCT GCTGACCCTC ATGCTGGGCT 100
ACTGCTGCAC GTGCGCCACC AGGTCCAACA CGGAGAGCCG CAATTCGGCG TCCACCTCGC GCCACACGTT GGCGACGTGT CAGGTCCGGC CTATAGCACC 200
GCGCATGTCC TGGCCGCGCT TGGGCGCGTA GCGCGCCCAA GCGCGCTACG GTGGCATCAT GGACGTGCCG ACGCTCATCC GGCTTGATCC ATCGTCACCA 300
ACTCAAGGGG GGGCGACCCA AGGCATCCAG GCGCTCTGCA TCTTGAAGGA TCGCAGCAGT TGTGCGCGGC GAGATGGGCT GTGCGTTATC CAGTCCATAG 400
GCCTGCCGCG CAGCATCGGC GGCTAGAGCT TGACGCGTCC GCGGTGAGTA CTCTTGCAGC CTTTGACGCG TGCTCTGGGC CAGTTCGGGC GCGATGACCG 500
GCATCGCGGA AAAGATATCG CCGGGTGCGG GGTTGGCTAG AAATGCTGTC TCCAGGTCGC GCGCATTCGC ATGGAGATCA GTTTGCGGAT CCTCGATCTC 600
GGCTCTGAAT GCGTTTGTCC TGGCAAGCGC GTCGATTGCA TCGCGCTTGT CGAAGCGTTC AATTACATTG GTGGATGTTC CGTACGTTTC GGCCCAGTGC 700
GAATCCCTTA GTAGAACGGC CGGACCGTCG CCCCACGAGT CGAGGACTAC AGGTGATTCT TCCGCCTCTG CCGAGCTTGG TGGCTGGTAC AGCGCATAGA 800
GGTGGGTCTG CTCATAGTCG CGTACATTCA TCATCTGCCC GCCATCCTCC ATGCGAACCG CATGCCGACG TGCGTTAATC GCTGCATTGT GATCACAGTT 900
GCCTGCCCCG GCAGCCAGCG CGCTGCCCGC CAGTAAATTT TCGTCATTTT CACCGAGACA GTAAGACAGG GAGCTGTAGG TGGCGCTCCG TCCGTTGCTG 1000
AGCCGCAGAT CGCTATCGAC ATTGCCTCGT CCACGGTGCA AGGCGAGTCG TGTCTCGTGT ACCGTCTCTG TCGCGTCGGC AAGGCGTTGA CGGTCGCTCG 1100
CGTCTTCGAT GGGTCTGCCG CTGAGTCGCA TACCAAGCTG GTAGGCCGCC TGCTGAACTT CGTGCGGCTG TAGGGTTGGC TGCCGGAAGC GATCCCGTCT 1200
CGTTCCCGAA GAGCCGAGTG CCACCAAGCC ATGCAGGCTG GGTGACATGG GCGCCTCGGG GGATGAAGGC GTAGAGGGCG TGGTCTGCTC TGTGGTGTGG 1300
GTTAAATAAT GCTCAGGTGA ACCCGCTACG GGTGAACCCG CCACGCTCGG CTTTGAACTG CATAGCCCCA TCTTGATCTC CTGCAGTGAC TGTAGAAGCA 1400
AGTTTGGCGG GGAGCGCTCC GCTTCGCTTC GCCTCACCGA AGGCATGGTT GGGACGGCGA AGCATTGACG CGGGGGATTC CCGAGCCTTC GCCAAGCGGC 1500
TGATCATTTG CCTGCCGGCA TTGCACCGGC TGCGATGGCG TTTTCGGGTT CGCCAACGGA GTGCGCCAGC CGCAGCTGCG CCAGGAGTTG TTCCAACGTG 1600
CTCAGGCGCA CCGTGGCCCG CAAGGTGTCC GCCTCGGCGT GTTCCCGGCG CTGGCGCTCT TCGACCAGTT CGGTCCGCGC CGCCGACAGT TCGGTGCGCA 1700
CGCCTTCCAG CGCATGGACA TCTTGGGTCC AGCGCACCTG CAGGGCTTGG TGCTCGGCGG CCGCCAGGCG CAGCGCGTCG CGCTCGCGTT GCTGGGCGTC 1800
GGCCCGCTGG CGTGCCTGCG CCAGTTCCCG CTCCAGCCGG GTCTGGCGTT CCAGCCACTG GCCGTTTTCC CGGTTGAGCT GCATCAGGTC GTGGTTCTTG 1900
GCGGTCAATG CCTCGTTGGC CTGCCGTAGG GCGACCTGCA GCTCCTGCAC CTGGTGTTCG TGCCGACGCT GTTCCTGCTC GCGCTGGTCC TTGACCGAGG 2000
TGCGGTAGTG CTCCAGGGCT TCCCTGGCGT GTTCGTGCTT GTGTTCCAAC GATTTCGCAT GGGCGTCGTG CTCGGCCAAT CGCGCCGTGA GGCCCGCGAT 2100
CCGCTCCTCC AGCTGGGCCA GTTCGGTGGT GCGGCGGGCC ACTTCGCTCC TGGCAGCGTC GCCCGCCTCG CGTTCGGCCT GCAGCGCGGT CTCGCAGCGT 2200
TGCAGCTGCG TCCTGAGCGA GCCAGCCTCC TGCCGGGCCT GCTCCAGCGC TTGGGTGCGT TCCTGCAGCT GCGCCTGGAA GCGCGCCTGG GCCTGCGCCA 2300
CGACCGTGTC AGCCTCGGCG TGCAACCGCT CGGCGAGGCG GGCGATGAGG TCTTGAAGTG CGTCGCTCAC GCCCATCTTC GCGCCAACGC TTTGCCCTTC 2400
CTCCTCTTCC AACTCTCTCA GATAACGGTG GATGGTGGTC TTGGACCCCG TGTTGCCCAG TGCCACCCGC ACCGCGTCCA CGGACGGATG CGTGCCCGTG 2500
GCGCGCAGGC GATCGCGGGC ACGTTGCACA TCGCTTTTGT ACAGCCCGGA CCTTGCCATC CGTCACTCCA CGTATTTCGT AACGTATTAC ATACCATGTA 2600
ATTACATACT CCTCAACGTA TTAAACGGAC CGTCGATAGG CGTTGAGCTC ACGCGGGATA ATCTAGAATT ATCCCGCCTG ATACCGGTTT TTCGGCTAAG 2700
CTCGCACGCG GGCCGTTACA CCCCGGCCCA TCGGGCGACT GGAGGAGCCG ATGATCAGCG TTGCGCAATA CCTGGAAGCC GCCACCCGAC CCAACACCGA 2800
ACGCGCTTAC GCCGCGGCGA CCCGCCATTT CGAGATCGAG TGGGGTGGTC ATCTGCCGAC GACCGCAGAG CAGGTGGCGC GCTACTTGGC CGCCTACGCC 2900
GGGCAACTCG CGCTCAACAC ACTCAGGCAC CGGCTCGCAG CACTGGCCCA GTGGCACCAG GCGCACGGTT TCGCCGACCC CACGCGGGCG CCCGTCGTAC 3000
GCAAGGTGCT CAAGGGCATC CAAACGGTGC ATCCGAGTCA GGAAAAGCGA GCCACGCCAC TGCAGCTCAC GCAGTTAGGT CAGGTCGTGG ATTGGCTCGA 3100
TGGCGCCGCA ACTGCGGCCG GAACGCGTGA CGATGCGGCC GGTCGGCTCC GGCACATGCG CGATCGCGCC TTTGTACTGC TGGGCTTTTG GCGCGGCTTC 3200
CGCGGCGACG AACTGGTTCG CCTCCAGGTT CAGGATTTGG AGTTGGTGGC CGGCGAAGGC ATGACCTGCT TCCTGCCGCA CAGCAAGAGC GATCGCCAGC 3300
ACGCCGGCAC CACCTACAAG GTCCCGGCGC TGTCGCGCTG GTGCCCGGTT GCCGCCACCA TGGCCTGGGT CGCGGCAGCC GCCCTCCACG AGGGGCCACT 3400
GTTTCGCGCA GTCAACCAGT GGGGCGGGAT TGCCGCCGCG CCACTCCACC CCAACAGCCT GGTGCCGCTG CTACGGCGGA TCTTCCGCGA GGCGGGGCTG 3500
AGTTCTCCCA ACGACTACAG CGGCCACTCG CTGCGGCGCG GCTTTGCCGG CTGGGCCAAC GCCAACGGCT GGGACGTCAA GGCGCTGATG GAGTACGTCG 3600
GCTGGCGCGA CGTGCACTCG GCGATGCGTT ACCTAGACGG GGCCGATCCG TTCGCCCGCC AGCGCATTGA GGCGAGCGTG TCGCCAGCCA CACCACCGCT 3700
GCTGGCCCTG GCGGCGCCGG CTCCCGATCC AGTGCCGACC ACGGCGGTCG AAGCGACTGT CACCCTGACG CGCTTCAACT CGCGTGTGCG CGGACTGGCC 3800
AAAGCGCATC GGCTGATCGA GCAAATCTGC CTGCAACCGC ATCAGGCGCA GCGACTCAAC GCCGACGGCA CGCGCTACCG GTTGGCGATC GCCGCCGTTG 3900
ACGAGGCGGC CTTTGAAGAA ACCATCGCAA TGCTGCTCGA CGAGATGCAC CGCATCGCCG ACAACCACCA GTGCTTCCTC GCCGTCGCCT TGCGCGATGA 4000
AGCGGGCGGG CGCCATTGGG ACTGAGCTGG GCATGACGAC GCTGCACGAA ACCGCCTACC CGCGCCTCAA GCCCGATCCC ACCGCCAAAG AACTCCAGGA 4100
TATCTACACG CCTACTGCGG CGGAGCTGCA GTGCGTCCGG AACATCGCTA CCGGCCCGGC CACACGGCTG GCCCTGCTAC TGCATCTGAA GCTGTTCCAG 4200
CGCCTGGGTT ATTTCACGAC CCTGATCGAG GTGCCCGAAC GTATCGTGCA GCATGTCGCT CAGACGCTGG GAATGCGCCG CGTGCCCGCC GACCGGTTGG 4300
CGGGCTACGA CGCCTCCGGC GCCAAGCGCG GGCATCTGGC CCAACTGCGG GCGTTCCTCA ACGTCTGTCC GCTCGATGCG GCTGGGCGAG ACTGGCTCGG 4400
CACCGTGGCT GAAACGGCTG CGCGGACCAA GCACATCGTG CCCGATATCG TGAACGTGAT GCTTGAAGAG CTGGTGCATC ACCGCTTTGA GTTGCCGGCC 4500
TTCAGCACGC TCGAACGCAT CGCGATCGCC GCCCGCGAAC GTGTCCACGA TGCGCACTAC CGCCAGATCG CCGATGCGTT GTCACCGACC ATGCGGACGC 4600
TGATCGATAA CCTGCTGCTG ACACCACCAG GCAGCCACCA CAGTGATTGG CACACGCTCA AGCGCGAGCC CAAACGCCCA ACCAACAAGG AAGTGCGCCA 4700
TTACCTGCGG CACATCCAGC GCCTGCGCAT CCTGGCCGAG CAGCTGCCGC CGATCGATGT TTCGGTGCCT AAGCTCAAGC AATTCCGGGC GATGGCCCGC 4800
GCACTTGATG CCGCCGAGTT GGCCGAACTG GTCCCGATCA AGCGCTATGC GCTGGCCGCG ATCTTCATCC GCTCCCAGTA TCGCAAGACG CTCGACGATG 4900
CGGCCGACCT GTTCATCCGC CTGATCCAGA ACCTGGAGAA CACTGCGCAG CAAAAGCTGA TCGCTTATCA GCTCGAACAC AGCAAACGGG CCGATGCCCT 5000
GATCGGCCAG CTCCGGGAGA TCCTGCAGGC CTATCAGGTC GAGGGCACAG ACACCGAGCG TGTGGGCGCG ATCGCGGGCG TGCTGGTCGC CGACATCGCT 5100
CTGCTGACGG CTGAGTGCGA CGAGCACATG GCCTACGCCG GCCGCAACTA TCTGCCATTC CTGCTGGCAC CATACGGGAC GTTGCGTCCG CTGCTGTTCA 5200
ACTGCCTGGA AATCATGGGC CTGCGTGCCG CCAGCCAGGA CCCCAGCATG GAGCGCATGA TCGGCGCTGT CCTGGCGCTG CGCAGTCAGC GCCGCGAGAC 5300
GATCGACGCC GCTAGCCTGG GCGTGGCTAC AACCGACCTG ACGTGGTTAT CGTCAGCCTG GCGCAAGCAT GTGATGCCCA AAGCCTTGGC CGCCGCCAGC 5400
CCCGGCTGGA TCCATCGCAA GTACTTCGAA CTGGCGGTGC TCGCGCAGAT CAAGGACGAA CTCAAATCCG GCGACCTGTA CATCCCGCAC GGCGAGCGTT 5500
ACGACGACTA CCGCGAGCAA CTAGTCGACG AGGCGACACT CGCGCAGGAA CTGGACGCCT ACGGCGAGGT CTCGGGCGTC GCCACCGACG CGGCTGACTT 5600
CGTGCAGGGT CTGCGCACCG AACTGACGAC ATTGGCCGAT GCCGTGGACG CTCGGTTCTC GGACAACCTG CACGCCAGCA TGCTCGACGG GCGGCTGGTG 5700
CTCAAGCGCC TGCAGGGCGC ACAGGTGACC CAGGCCATCG CCACAGTGGA CAGCGCGATC ACCGACCGGC TGCCGCCGAC CAGCATCGTC GATGTCCTGG 5800
TCGACACCAC CCGCTGGCTG GACCTGCACG TGCACTTCCG CCCGATCGCC GGCACCGACG CGCGAGTCGA CGATCTGCTG CGGCGCGTGA TCACCACCTT 5900
GTTCTGCTAC GGCTGCAATC TGGGGCCGAC CCAGACCGCG CGTTCGGTCA AGGGCTTCAG CCGGCGCCAG ATCTCGTGGT TGAACTTGAA GTACGTCACC 6000
GATGAAACGC TCGACAAGGC GATCGTCCAG GTGATCAACA TGTACAACAA GTTCGAGTTA CCCGGCTACT GGGGCAGTGG CAAGAGCGCC TCGGCCGACG 6100
GCACGAAGTG GAACGTGTAC GAGCAGAACC TACTGTCGGA ATACCACATT CGCTACGGCG GCTATGGTGG CATCGGTTAC TACCATGTGT CCGACAAGTA 6200
CATCGCGTTG TTCAGCCACT TCATCCCGTG TGGCATACAC GAAGCGGTCT ACATCCTCGA CGGGATGCTG GCCAACCGGT CCGACATCCA GCCCGACACC 6300
GTACACGGCG ACACCCAGGC GCAGAGCTTC CCGGTATTCG GGCTGGCGCA TCTGCTGGGC ATCAACCTCA TGCCGCGCAT CCGCAACATC AAGGACCTGG 6400
TGTTTTCCCG GCCGGAGCCA GGTCGGACCT ACGAGAATAT CCAGGCGCTG TTCGGGGACA GCATCGACTG GACACTCATC GAGACCCACG TGCACGACAT 6500
GCTGCGGGTC GCCATCTCGA TCAAACTGGG CAAGATCACC GCTTCCACCA TCCTGCGCCG GCTCGGCACC TACAGCCGCA AGAACAAGCT GTACTGGGCA 6600
TTTCGCGAAC TGGGCAAGGC GGTACGCACA CTGTTCCTGT TGCGCTACAT CGACGATGTC GAAGTGCGCA AGACCATCCA CGCCGCCACC AACAAGAGCG 6700
AGGAGTTCAA CGGCTTCGTC AAATGGGCCT TCTTCGGCGG TGAAGGGATC ATCGCCGAGA ACGTCCAGCA CGAACAGCGC AAGATCGTGC GTTACAACCA 6800
GTTGGTGGCC AACCTGGTCA TCCTGCACAA CGTGGAGCAG ATGACCCGCG TGCTGGCCGA GCTGCGGGAC GAGGGCTCAA ACATCAGCCC GGAAGTGCTG 6900
GCCGGCCTGT CGCCGTATCG GACCAGCCAT ATCAACCGGT TCGGTGACTA CACCTTGGAC CTCAAGCGGC AGGTCGAGCC AATCGATTTC TCGCGGAGAA 7000
TTCTTGCGGC GACAACGCGT TAGGACGCAA TCAGCTGTTT TTTTACCGGG CGAATTCCTG CTTGCCCATC GCGGTCAAAA ACGCATAGCT GCAATAATTA 7100
CATCCTGGGA ACAGGAGGAC TAGAGTGGCC GCTCAACCAC CACCTCGGGT ATCTCATGAT CATGCCTTCG CGCCTTTTGC GTTTAACGCT CGGTGTCAGC 7200
GTCTGTGTGG CCGCAACCAG CGTAGCAGCG CAAGCCATCG CTCCCGAAAC AACCGCATCC TCCGCAACCG ACGCCGGTGG GCAACAGCAG GATCCCGCAC 7300
CCACTTCGAG CTTCGAACAG TGGCTGGCAG ACTTCCGCCA ACGTGCGCTT GCCGCCGGCA TTGGAGCCAC CACGCTGGAT AACGCATTGG CTGGTGTCAC 7400
ACCCGATCCA GCGGTGCATG AACTGGATCA GCGGCAACCC GAATTCACCC AGTATCTATG GGACTATCTC GACGCGCGTG TCACACCTTC GGCCATCCAG 7500
GAAGGACAGC AGCTGCTGAT CAGCCAGCAC GCCCTCTTCG AGAAGTTGCG GCAGCACTAC GGTGTGGATC CGGGCATTCT GACCGCCATC TGGAGCATGG 7600
AAAGCGGGTA CGGCAAGCAG ATCGGGGACT TTTATGTCAT TCGCTCCCTG GCGACACTGG CCCATGAGGG ACGGCGCACC ACGTATGGCA ACACGCAGCT 7700
GCTTGCGGCC CTGCAGATCC TGCAGACGGA AAAAAGCATT GATCGCTCGC AACTGGTGGG TTCGTGGGCC GGCGCCATGG GACAGACGCA ATTCATTCCG 7800
AGCACCTATC GCGACTACGC CGTCGACGAG GATGGCGACC AGAAGCGGGA TGTCTGGAAT TCCAAGGCGG ACGCTTTGGG CTCTGCGGCG AATTATCTCA 7900
AGCAGAACAA TTGGACCAGC GCTGTTCCCT GGGGCCAGGA AGTCCAGCTG TCAGCCGGCT TCGACTACGC GCAAGCCGAC CTGACGATCA AGAAGACCGT 8000
CGCCGAATGG CAGCGCCTGG GCGTGGCGCC CCGCAGGCCG ATTGCGCCCG CACTGGCGCA GCAGTTGGCA TCGGTGTTGT TGCCCACCGG ATACCGCGGC 8100
CCGGCCTTCC TAGTGTTCGA TAACTTCCGC AGCATTCTGC GCTACAACAA TTCCACCGCC TATGCCCTGG CGGTCGGCTT GCTGGCAGAC GGCTATGCGG 8200
GCAGGGCCGG GGTCAAGCAA CCCTGGCCCA AAGACGATCC GCCGCTCAAT AGCACGGCCC AGATCACCGA GCTGCAGCAG AGGCTGACCG ACAAGGGATT 8300
CGACGTGGGC GGCATCGACG GTGTGCTGGG GGCGCAAACT CGCCAGGGAA TCCGTGCATT CCAGCGTAGC CAGCAATTGC CGCAGGACGG TTACGCCAGT 8400
ACGTCGCTGC TGGCCCGTCT GCGGGCCCCC TGATCGGGGA TATCCCTCAC CTTGGCCATG CTTCAAAATA TTTAAATGTT AACCAACAAC GATGCATTAA 8500
GCATGCTAAG AAAATCAATA ATTTTAGCTA AAATATCGTC ATTTCTCGCT GCAATAGCAT TCGGATTCCT TTTTTTATCG ATATCGGCCC CAAGCCAGGC 8600
AGACGATTTG GGGGCAGTTT CTGTGCATGG TGACATTCAA CCCGCCAATC CTACAGATAA TCAGGTGCGG AGCGCGCACC AGCAGCAAGC TTTGGGTAAA 8700
TGCAAACAAC AGTTTGTAAA TTCCAGCTCT GCATATTTAG CGAGTTGGGC CGTTACTGCA GGGGGGAAGC ATCCTGATTA CTGGAATATC AATAGCGTCT 8800
GGATTTGCAC AAGTGGCTAA GATGAATTGC CCATCTTGAT GGTCGATAGG GGTTGAGGGC CGGCAGGAAG TTGTGAAAAA CTTCTTTTCT AACAGAGATT 8900
TAGCTCAATT TTGGCTGTTT TTTACACAAA TCCCTGTCGA CCCTC
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| res_acc_IR2 |
2592-2600 |
9 |
TACCATGTA |
| res_acc_IR2 |
2649-2662 |
14 |
TCACGCGGGA TAAT |
| res_acc_IR1 |
2667-2681 |
15 |
AATTATCCCG CCTGA |
| res_core_IRR |
2709-2716 |
8 |
CGGGCCGT |
| res_core_IRL |
2718-2725 |
8 |
ACACCCCG |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| xopE2 |
TnXax1 |
295-1248 |
Passenger Gene |
Plant Pathogenicity |
- |
| tnpT |
TnXax1 |
1504-2559 |
Accessory Gene |
Resolvase |
- |
| tnpS |
TnXax1 |
2751-4025 |
Accessory Gene |
Resolvase |
+ |
| tnpA |
TnXax1 |
3997-7023 |
Transposase |
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+ |
| mltB |
TnXax1 |
7156-8433 |
Passenger Gene |
Plant Pathogenicity |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| xopE2 |
XopE2 |
TnXax1 |
954 |
295-1248 |
- |
| Class: | Passenger Gene |
| Sub Class: | Plant Pathogenicity |
Protein Sequence:
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MSPSLHGLVA LGSSGTRRDR FRQPTLQPHE VQQAAYQLGM RLSGRPIEDA SDRQRLADAT ETVHETRLAL HRGRGNVDSD LRLSNGRSAT YSSLSYCLGE
NDENLLAGSA LAAGAGNCDH NAAINARRHA VRMEDGGQMM NVRDYEQTHL YALYQPPSSA EAEESPVVLD SWGDGPAVLL RDSHWAETYG TSTNVIERFD
KRDAIDALAR TNAFRAEIED PQTDLHANAR DLETAFLANP APGDIFSAMP VIAPELAQST RQRLQEYSPR TRQALAADAA RQAYGLDNAQ PISPRTTAAI
LQDAERLDAL GRPPLSW
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpT |
TnpT |
TnXax1 |
1056 |
1504-2559 |
- |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
Protein Sequence:
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MARSGLYKSD VQRARDRLRA TGTHPSVDAV RVALGNTGSK TTIHRYLREL EEEEGQSVGA KMGVSDALQD LIARLAERLH AEADTVVAQA QARFQAQLQE
RTQALEQARQ EAGSLRTQLQ RCETALQAER EAGDAARSEV ARRTTELAQL EERIAGLTAR LAEHDAHAKS LEHKHEHARE ALEHYRTSVK DQREQEQRRH
EHQVQELQVA LRQANEALTA KNHDLMQLNR ENGQWLERQT RLERELAQAR QRADAQQRER DALRLAAAEH QALQVRWTQD VHALEGVRTE LSAARTELVE
ERQRREHAEA DTLRATVRLS TLEQLLAQLR LAHSVGEPEN AIAAGAMPAG K
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpS |
TnpS |
TnXax1 |
1275 |
2751-4025 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Tyrosine Site-Specific Recombinase |
Protein Sequence:
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MISVAQYLEA ATRPNTERAY AAATRHFEIE WGGHLPTTAE QVARYLAAYA GQLALNTLRH RLAALAQWHQ AHGFADPTRA PVVRKVLKGI QTVHPSQEKR
ATPLQLTQLG QVVDWLDGAA TAAGTRDDAA GRLRHMRDRA FVLLGFWRGF RGDELVRLQV QDLELVAGEG MTCFLPHSKS DRQHAGTTYK VPALSRWCPV
AATMAWVAAA ALHEGPLFRA VNQWGGIAAA PLHPNSLVPL LRRIFREAGL SSPNDYSGHS LRRGFAGWAN ANGWDVKALM EYVGWRDVHS AMRYLDGADP
FARQRIEASV SPATPPLLAL AAPAPDPVPT TAVEATVTLT RFNSRVRGLA KAHRLIEQIC LQPHQAQRLN ADGTRYRLAI AAVDEAAFEE TIAMLLDEMH
RIADNHQCFL AVALRDEAGG RHWD
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
TnXax1 |
3027 |
3997-7023 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MKRAGAIGTE LGMTTLHETA YPRLKPDPTA KELQDIYTPT AAELQCVRNI ATGPATRLAL LLHLKLFQRL GYFTTLIEVP ERIVQHVAQT LGMRRVPADR
LAGYDASGAK RGHLAQLRAF LNVCPLDAAG RDWLGTVAET AARTKHIVPD IVNVMLEELV HHRFELPAFS TLERIAIAAR ERVHDAHYRQ IADALSPTMR
TLIDNLLLTP PGSHHSDWHT LKREPKRPTN KEVRHYLRHI QRLRILAEQL PPIDVSVPKL KQFRAMARAL DAAELAELVP IKRYALAAIF IRSQYRKTLD
DAADLFIRLI QNLENTAQQK LIAYQLEHSK RADALIGQLR EILQAYQVEG TDTERVGAIA GVLVADIALL TAECDEHMAY AGRNYLPFLL APYGTLRPLL
FNCLEIMGLR AASQDPSMER MIGAVLALRS QRRETIDAAS LGVATTDLTW LSSAWRKHVM PKALAAASPG WIHRKYFELA VLAQIKDELK SGDLYIPHGE
RYDDYREQLV DEATLAQELD AYGEVSGVAT DAADFVQGLR TELTTLADAV DARFSDNLHA SMLDGRLVLK RLQGAQVTQA IATVDSAITD RLPPTSIVDV
LVDTTRWLDL HVHFRPIAGT DARVDDLLRR VITTLFCYGC NLGPTQTARS VKGFSRRQIS WLNLKYVTDE TLDKAIVQVI NMYNKFELPG YWGSGKSASA
DGTKWNVYEQ NLLSEYHIRY GGYGGIGYYH VSDKYIALFS HFIPCGIHEA VYILDGMLAN RSDIQPDTVH GDTQAQSFPV FGLAHLLGIN LMPRIRNIKD
LVFSRPEPGR TYENIQALFG DSIDWTLIET HVHDMLRVAI SIKLGKITAS TILRRLGTYS RKNKLYWAFR ELGKAVRTLF LLRYIDDVEV RKTIHAATNK
SEEFNGFVKW AFFGGEGIIA ENVQHEQRKI VRYNQLVANL VILHNVEQMT RVLAELRDEG SNISPEVLAG LSPYRTSHIN RFGDYTLDLK RQVEPIDFSR
RILAATTR
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| mltB |
MltB |
TnXax1 |
1278 |
7156-8433 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Plant Pathogenicity |
| Target: | cell wall |
| Comment: | Membrane-bound lytic murein transglycosylase B precursor |
Protein Sequence:
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MIMPSRLLRL TLGVSVCVAA TSVAAQAIAP ETTASSATDA GGQQQDPAPT SSFEQWLADF RQRALAAGIG ATTLDNALAG VTPDPAVHEL DQRQPEFTQY
LWDYLDARVT PSAIQEGQQL LISQHALFEK LRQHYGVDPG ILTAIWSMES GYGKQIGDFY VIRSLATLAH EGRRTTYGNT QLLAALQILQ TEKSIDRSQL
VGSWAGAMGQ TQFIPSTYRD YAVDEDGDQK RDVWNSKADA LGSAANYLKQ NNWTSAVPWG QEVQLSAGFD YAQADLTIKK TVAEWQRLGV APRRPIAPAL
AQQLASVLLP TGYRGPAFLV FDNFRSILRY NNSTAYALAV GLLADGYAGR AGVKQPWPKD DPPLNSTAQI TELQQRLTDK GFDVGGIDGV LGAQTRQGIR
AFQRSQQLPQ DGYASTSLLA RLRAP
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| References |
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| 1. | Alegria MC, Souza DP, Andrade MO, Docena C, Khater L, Ramos CH, da Silva AC, Farah CS. Identification of new protein-protein interactions involving the products of the chromosome. J Bacteriol. 2005 Apr;187(7):2315-25. doi: 10.1128/JB.187.7.2315-2325.2005. PubMed ID: 15774874
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