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Recombination Sites | |
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Internal Transposable Elements | |
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Internal Repeats | |
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References | |
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| Name: TnSba14 (Synonyms: Tn7190) |
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| Family: Tn3 Group: Tn21 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Shewanella baltica OS155 | | |
| | Date of Isolation: | 2007 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 38 bp) |  | GGGGTCCGCTTGGAAAACGGAAAATATCCCACGCTAAG |
| IRR (Length: 38 bp) | | GGGGTCCGCTTGGAAAACGGAAAATATCCCACGCTAAG |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCCGCT TGGAAAACGG AAAATATCCC ACGCTAAGAC CATTTTTTAA ACAGCAGGTA TTTGCTGTTT TACTTTAACT CTCAGAATTG TTTGCCGTGT 100
GGTTCTGAAT TCCCGGGCAA TAGCACTTAT ACTTACACCA GACTGAATTC GTTCGAGTAC CCTCTGTTTT TGTTCTTCAT TTAACACCGG CGGACGCCCG 200
AAGCGTTTTC CTGCTGCCTT TGCCCTTGCA ATACCAGAAT GAGTGCGTTC AAGAAGCAGG TCCCGTTCAA ACTCCGCAAC CGCAGAAATC ACCTGCATCG 300
TCATTTTTCC TGCAGGACTA GTCAAATCAA CACCACCCAA TGCCAAGCAA TGCACTCGAA TACCTGATCC GGCCAGTTGC TCCACTGTTT TTCTGATATC 400
CATCGCATTA CGACCAAGAC GATCCAATTT TGTGACAATC AGTACATCGC CGTTTTCCAT GCGGTCAAGT AGCTTAGTGA ACCCCGGACG CTCACCGGCA 500
GTTACTGAAC CGCTGATCTG TTCTTCGAAT AGTCGCTGGG GTTTGACAGC AAAACCTGCC TCTTCAATTT CACGGCGCTG ATTTTCGGTG GTCTGCTCTA 600
GAGTGGATAC ACGGCAATAA GCAAAAACTC GTGACATAGC TAAATGTTTC GTACGAAAAG GGTGTACTAA TTATAAGCCA TGTACGAAAT TATTTTAACT 700
AATATTCGTA CATATTTAGA ATAGGGTGTC CAAAACCGGT CAGTTTCGGT CAAAGTTAAC CACTAACAAA TTGAAACTAT ACGCGAGGGA AGCATTTATG 800
CCACGGCGAC AGATACTAAG CAGTGAAGAA CAGAAGCGCT TACTGGTTAT ACCAGATGAT GAAATTATTC TGACCCGAAT GTGTTTTTTG AATGAGCGTG 900
ATATTGCGCT CATAAATAAG CACAGACGGC CAGCGAATCG CCTGGGCTTT GCCGTTTTAC TCTGCTATCT GCGTGGCTCC GGATTTATTC CGGACAAAAA 1000
TACCTCGCCT CACTGTGGCG TCGTATCCAG AGTCGCTTCC CGATTGAAAC TTCAGCCTGA TTTATGGCAT GAATATGCAT CCAGAGAGCA AACTCGCTGG 1100
GAACATCTGA CCGAACTTTA TCGTTACCTG AAATTATCCC CATTCAGCCG AACACTGCAA AAAGACTGCA TCCGGCATCT GCACCCCTAT GCCATGCGAA 1200
CTGACAAAGG GTTTATGTTG GCGGAAGAAA TGCTCAGCTG GCTACATAAC AATAATGTTA TTTTCCCTTC TGTTGATGTG ATCGAGCGGA CGATTGCCGA 1300
AATCGTCACG CTGTCTGACA GAGCCGTATT TTCGGCACTT ACCGCGCAAC TGGAAAATCA TCATAAATCA GCACTCGACA GCCTGCTCAT ATCAGAGAGT 1400
GACCAACCTT CCCGTCTGGC GTGGTTACTT CAGCCATCGG GTAAAATCAA CGGTAAAAAT GTGCTGCAAC ATATCGACCG GCTTAATTCC ATTACTGCGC 1500
TGGGATTGCC TGATGGTATT GCGCTTTCCG TTCACCAGAA CAGGTTGCTT AAGCTAGCGC GTGAGGGACG AAAAATGAGC AGCAGAGATC TGGCAAAATT 1600
CACCGATGTC AGACGTTACG CTACGATGAT TTGTATAATA ACAGAGGCCC GGGCCACCCT AACAGACGAA GTGATTGATC TACACGAGCG TATTCTGGGC 1700
AGTCTGTTCA GCAGGGCAAA ACGAACGCAG TCCGAACGAC TCCAGCAAAC GGGAAAGCTT ATTCAGAGCA AGCTAAAGCA GTACGTTACC GTCGGTCAGG 1800
CGTTACTTAA CGCCAGAGAA TCCGGCGAAG ATCCCTGGAC CGCAATAGAA GACGTCCTAC CATGGCAGGA ATTCATCAAC AGTGTGGAGG AAACGCGGGT 1900
TCTGTCCCGT AAGGGCAATT TCGACCCACT TCACCTGATC ACCGAAAAAT ACAGCACGCT GCGTAAATAC GCCCCGCGTA TGCTGTCAGC ATTGCAGTTC 2000
ACGGCGGCGC CTGCAGCTCA GATGCTCAGC GATGCACTGG ACACCATAAC TGAAATGTAC CGTAAGCAAC TTCGTCAAGT TCCGCCGGCA GCGCCAACAG 2100
GATTTATCCC TGAAAGCTGG CGAAAACTGG TGCTCACACC ATCCGGGATC GACCGCAAAT ACTACGAGTT TTGCGTACTG AATGAACTCA AAGGGGCGTT 2200
ACGTTCCGGT GATATCTGGG TAAAAGGATC ACGTCGCTAC AGAAATTTTG ATGATTATCT CATCACGGCT GCTGAGTTTG AGAAATTCCG CCATAATGAT 2300
CAGTTACAGT TGGCCGTTCA GACCGATTGC CGGGCATACC TTCAGGCTCG TATGACCCTT CTTGCATCGC GTCTGGAAGA AGTTAACGCG ATGGCGCTTG 2400
CTGGTGATTT GCCCGATGTT GATATCTCAG ATAAAGGCGT AAAAATAACC CCGTTGGAGA ACAGCGTTCC TTCGGGTGTC TCGCCCTTTG CCGATTTGGT 2500
TTATGGCATG CTTCCCCATC CGAAAATTAC GGAGATACTG GAAGAAGTGG ATAACTGGAC TGGGTTTACG CGTCACTTCA CGCACCTCAA AAATAATAAC 2600
GTCAGACCAA AAGACGGAAG ACCGTTGCTG ACCACCATTT TGGCTGACGG CATCAATCTG GGGCTGACAA AAATGGCGGA GTCCTGCCCG GGGGCAACAA 2700
AATCGACACT CGAAGGTATT CAGGCATGGT ACATCAGAGA TGAAACTTAT TCAGCAGCAC TTGTTGAGTT GGTCAATGCC CAGAAAGCGC GCCCGCTAGC 2800
CGCATTCTGG GGTGATGGTA CAACATCGTC GTCAGACGGA CAGAACTTTC GGGTAGGCAG TCACGGACGT TATGCCGGTC AGGTCAATCT TAAATATGGT 2900
CAAGAACCGG GCGTGCAGAT TTATACGCAT ATCTCAGATC AATACAGTCC GTACTACGCC AAAGTGATCA CTCGGGTGCG CGACTCAACT CACGTGCTTG 3000
ATGGCCTTCT GTACCATGAA AGCGACTTGG AAATTACCGA GCATTACACC GATACAGCAG GCTTTACAGA ACATGTTTTT GCCCTGATGC ATCTGCTGGG 3100
ATTCACTTTT GCGCCAAGGA TCCGGGATCT TCATGACAAG CGGTTGTTTA TTCAAGGAAA TAACTGGGAT TATCCGGGGC TTCAGTCCGT TATATCAACA 3200
ACCCGCCTGA ATCTCAAAGA CATTGAGGCG CACTGGGATG AAGTATTACG GCTAGCAACT TCGATAAAGC AGGGGACAGT CACCGCATCG CTGATGATGA 3300
AAAAGTTAGC CAGTTATCCA AAACAGAACG GACTTGCCAA AGCGCTGAGA GAGATAGGTC GAATAGAGCG GACACTGTTT ATGCTGGACT GGTTTCGAGA 3400
TCCGGGTCTG CGGCAACGGG TACAGGCTGG GCTGAATAAG GGTGAGGCCC GTAATGCCCT TGCGCGTGCG GTTTTTATGC ATCGTCTGGG TGAAATCAGA 3500
GATCGGGGGC TGGAAAATCA GAGTTACCGT GCCAGCGGAC TGACGTTACT GACAGCGGCG ATCACGTTAT GGAACACGGT ATATATAGAA AGAGCCATTG 3600
AGTCACTGAA ACGAAAAGGT GTCCCTATTA ATGAACAACT AGTTGCTCAT CTTTCTCCCC TGGGCTGGGA ACATATTAAT CTGAGTGGCG ATTACGTTTG 3700
GCGCCATAAT GTAAAGCTGG GGTCCGGAAA ATATCGGCCA TTACGTACAG TCAATACTGA ATTGTACAAA AAACAGTCTT AGCGTGGGAT ATTTTCCGTT 3800
TTCCAAGCGG ACCCC
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnpR |
ISSba14 |
47-637 |
Accessory Gene |
Resolvase |
- |
| tnpA |
TnSba14 |
798-3782 |
Transposase |
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+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
ISSba14 |
591 |
47-637 |
- |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MSRVFAYCRV STLEQTTENQ RREIEEAGFA VKPQRLFEEQ ISGSVTAGER PGFTKLLDRM ENGDVLIVTK LDRLGRNAMD IRKTVEQLAG SGIRVHCLAL
GGVDLTSPAG KMTMQVISAV AEFERDLLLE RTHSGIARAK AAGKRFGRPP VLNEEQKQRV LERIQSGVSI SAIAREFRTT RQTILRVKVK QQIPAV
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
TnSba14 |
2985 |
798-3782 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MPRRQILSSE EQKRLLVIPD DEIILTRMCF LNERDIALIN KHRRPANRLG FAVLLCYLRG SGFIPDKNTS PHCGVVSRVA SRLKLQPDLW HEYASREQTR
WEHLTELYRY LKLSPFSRTL QKDCIRHLHP YAMRTDKGFM LAEEMLSWLH NNNVIFPSVD VIERTIAEIV TLSDRAVFSA LTAQLENHHK SALDSLLISE
SDQPSRLAWL LQPSGKINGK NVLQHIDRLN SITALGLPDG IALSVHQNRL LKLAREGRKM SSRDLAKFTD VRRYATMICI ITEARATLTD EVIDLHERIL
GSLFSRAKRT QSERLQQTGK LIQSKLKQYV TVGQALLNAR ESGEDPWTAI EDVLPWQEFI NSVEETRVLS RKGNFDPLHL ITEKYSTLRK YAPRMLSALQ
FTAAPAAQML SDALDTITEM YRKQLRQVPP AAPTGFIPES WRKLVLTPSG IDRKYYEFCV LNELKGALRS GDIWVKGSRR YRNFDDYLIT AAEFEKFRHN
DQLQLAVQTD CRAYLQARMT LLASRLEEVN AMALAGDLPD VDISDKGVKI TPLENSVPSG VSPFADLVYG MLPHPKITEI LEEVDNWTGF TRHFTHLKNN
NVRPKDGRPL LTTILADGIN LGLTKMAESC PGATKSTLEG IQAWYIRDET YSAALVELVN AQKARPLAAF WGDGTTSSSD GQNFRVGSHG RYAGQVNLKY
GQEPGVQIYT HISDQYSPYY AKVITRVRDS THVLDGLLYH ESDLEITEHY TDTAGFTEHV FALMHLLGFT FAPRIRDLHD KRLFIQGNNW DYPGLQSVIS
TTRLNLKDIE AHWDEVLRLA TSIKQGTVTA SLMMKKLASY PKQNGLAKAL REIGRIERTL FMLDWFRDPG LRQRVQAGLN KGEARNALAR AVFMHRLGEI
RDRGLENQSY RASGLTLLTA AITLWNTVYI ERAIESLKRK GVPINEQLVA HLSPLGWEHI NLSGDYVWRH NVKLGSGKYR PLRTVNTELY KKQS
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