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Internal Transposable Elements | |
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References | |
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| Name: TnEcO26 (Synonyms: Tn7159) |
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| Family: Tn3 Group: Tn21 |
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| Evidence of Transposition: yes |
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| Host |
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| Host Organism: | Escherichia coli O26 | | |
| | Date of Isolation: | 2016 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 39 bp) |  | GGGGTCGTCTCAGAAAACGGAAAAAATCGTACGCTAAGC |
| IRR (Length: 41 bp) | | GGGGTCGTCTCAGAAAACGGAAAATAAAGCACGCTAAGCCG |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCGTCT CAGAAAACGG AAAAAATCGT ACGCTAAGCA CCGCAAAGAA ACTCGTGATG GACAGGCACG CTACGGTCGC GGGTCGTGCC TGCCCATTGC 100
TCAGTTGCCC TTGACGCGCA ACAGTGTCAG CGTACCGGCA GCCATCAACA CGGCCGCCAG CCCGAAACCG ACCACAGGCG AGACCGCCGT CCACACCACG 200
CCGACCGAGG CGCTGGAAAT GAACTTGGCA GCGCCATTGA CGGTGCCCAG CGCGCCATAG CTCATCGCCA GCGTGTCCGG CTGCACCATC TCGGCCGTCA 300
CGGTGGACTC CAGCGCTTCC TGGACCGCCA CGTACAGACC GGCAATGAAG AACACCCCGG CCAGCAGCGG CACGCTGGCT ATGCCCAGCC AGAATGCGAG 400
CGCCGTCAGC ACCGCCGTCA GTGTGCCCAG CACATAACCG GCAATCAGCA CCGGCAAGTG GCCGACACGA TCCGCCAGCA CGCCCACTGG GTAGGAAACA 500
GCGACCTGCA CGAGGTTGCG CCACACATAG AGAAGGCCAG CCACCTGTGC CGCCTGGATA ACGCCCAGCG AGGGGGTCAG CAAGGTCGTG GCCGCCAGGA 600
TCAACAGGCT GTGCGAGAAA TCACCGATGC CAAAGATGCC GACCGCGCCG AGATAGCGTT TGAACCGGGC GGGCAGGCCA CGCAGCGAGC TGAAGAACTT 700
CAGGGCCGGG TTGGGCGAAT GCTCCGGGTC TTTGACCAGC GTGAGAAACG CCAGCACGGC TAAGACACCC GGAATCACCG ACAGCCATAA TACGAGCCGG 800
AAGGGTCCAG CCGCGTCGCT CCAATGAATG CCTTGCGCCC AACCCAGCAG CGCGACGCCC AGCAAGGGGC CGACACCGCA CCCACGGTGT CGGCAGCCCG 900
GTGAAAGCCG AAGGCGCGGC CACGCGTTTC CGGCGACACG GCCTGGATAA CGATGGCATC ACGCAGCGGG CCGCGCAGCC CTTTGCCGAA CCAGGACACG 1000
ATGCGCCCCA GCAGCAGGAG GGGCCAGCCA GCCGCCAGCG CGATCAGCAC CTGCCCCAAC GGGGTCAGTC CGTAGCCGAC CATCACAAAG AGCTTGCGGT 1100
GTCCCAGCTT GTCGGCGATG TAGCCAGACA CCATCTTGGT GAATGCGGCG ATGGCGTCGG CAATGCCTTC GATGAGGCCA AGCACGGCGG CGGGAATGCC 1200
GAGTACGGCC AGAAAGCCAG GCAGGATGAC CGTGGTGGTT TCGTAGCAGA AATCCCCCAA TGAGCTCGTG ATCCCCGCAC CTGCGACGGT GCGGTTGAGC 1300
CAGCGTTTCG GCGGATCATC CGTTGACGTC GTCATTGTGG TTGTCCTTTT CTGCATGTTG CCAGAAGGTC CAACTCTGGC GTGTAGGCAG CGGTTTTCAC 1400
GTCGAACATC CCGAGCAAGG TGTGAAACAG GTGATCGTGA CTTACCGGTG CCCGAGAGGC ATGAGTTTGC ATACAGGCTT GGTCGGCATA AACCTGACTC 1500
GACTGCCACC AGATCATCGG CACCTTGATC TGCTCATCCG GCGCGATGAC GTAAGGTATG CCATGGAGAT ACAGGCCTTT CTCGCCGAGC GATTCCCCAT 1600
GATCGGAAAC GTACAGCAGC GCCGTGTCGT GTGAGCGGAT GCCGGACAGC AGGTCAATGG TACGGGCAAG CACATGATCG GTGTAAAGCA CGGCGTTGTC 1700
GTAGGTGTTC ACCAAGGCTT CATGCGAACA GCTGGCCAGA TCGGTGGTGT CGCAGGTTGG CGACCAGCGT CGGTAGCTTG CGGGATAGCG CTGGAAATAC 1800
GCTGGGCCGT GATTGCCCAG CATATGCAGA ACGATCAGCA TATCGCTGCG GCTTGTTGTT ATCTTCTCGG CCAACCCTTC GAGCAGAATT TCATCCAGGC 1900
AGCGCTCGCC ATGGCACAGT GTGGGATGGC CTGCCGAAGA CAGGTTTTCA AAGGGCAGTC CATCACAGAC GCCTTTACAG CCCGACTGGT TATCGCGCCA 2000
GAGAATGTTG ACGTCACTAC GGTTTAAAAC GTGCAGCACG GACTCGCGCC GACGAATCTG GCGTTCGTCG TAGTCGCGCC GACCATTGAG GGAAAACATG 2100
CAGGGAAGGG ATGTAGCCGT ATCCGTCCCG CAACTGGTGA CATCGGAAAA ATTGATCACG TCGCGTGCGG CCAACTCAGG GGTGGTTTGT CGTTCATAGC 2200
CGCTCAACCC CCAATTAGCC GCCCTGACGG TTTCCCCGAC AACCAGTACG AGAGCACGAG GACGGCGGCC TTGTTCTTGA GGCCCTCGAT GCGCATCGGC 2300
TGCAACGACT TCCCTTGCTT CGTCTGCTGA CGATGACGCC TGTTCAGTCA AAACCCGAAT GCCCGAGATG ACGTAGTTTG CAGGAGTGAT CAAATAGCGA 2400
AGCGGCTTGT TTTCACGAAG CGTGGGTATC AGCACATCCA TGACTGGCCA CAGACCCATG GAAATCATGG CGAGAGCGCC AGCCAGACAA GCGCTGCGCA 2500
TCATTACCGC TTGTTTCCAG CCCGTTCGTA AAACCCTGAC TCTCGCAATC CACCACACGG ATACGGCTGC AACCAACAAG TAGGGCAGCA TTCTCCATTG 2600
CAACAGCTCA CTGGCTTCCC TGACGTCCGT CTCCATCAGA TTCCGCAGCA TGGCCTTGTC GAGATAAACC CCGTAGTTGC GCATGAAATA AACGGCGGCG 2700
GGCGTCATGA CAGCAAGCAG AATCAGTAGT GGCTTGACAC TCCAGCGCGT GGCCACCAGA AGGAGCAACA ACCATTGCAG CCCGGTGATC AGCAACCCAG 2800
TGCAAAGGAG CATTAGCCAT GTTCCAGAAG TTAGGGAGTC GCGTCCAGCA AGAAGGGCAT TCCAAAACAC GCCATTGCAC AGCAGGGTGA ACACAAGGCT 2900
GATGAACAGA GTCAAAAATT CAGTGCGCAC TTGCGGGCGC ATTTTCAAGA AAGTGATAAA TGCAGACAAC CGCATGAAAT ATGTCCTCTT CTTTCAACGG 3000
TTTTCATCGT GAGCGTCGAA CATCCGTTGC GCGTAGGCGT CCAGCAAGGC TTCGCAGCCT TTGAGCCGTT CGGCTGCCTC TGCGGCCAGC GTGGCACCGT 3100
AGAAGTCGAG CTTGGCGATT TTTTCCAGCC AGGACAGGAG CTTCTTCAGA TCGACATCGT TTTCTTCCAA CTCGGCGTAG GTGAAGTGCT GAACTTCGGT 3200
TTCGTGGGCG ATCTCGGCCT CGAAGTCGGC GCACTTGCCA AGGAGTTCTT TGTATTCCTC GTCGCGGTCT GCCTTGAAGC GGGCAATGAC TTTGTCTTCC 3300
TGAGCACGAT CAAGCGCAAC CGTTTCCAGC AGGACGGAAT CGCCCGCCAT TTCGTTGATC TCGTTCTCGA TGATCTTGAG TCGCCGGGTG TGATCGTCGG 3400
TCTTGGGCAG CAAGCAGACG CCGTTTTGTA GATAGACAGC GCCCATGCCT TTGAGCTTGC GCCACAGCGC GATGCGCTTC TTGGCCGGTT CGGGTGGCAC 3500
CTTGTAGGTG AGCAATAACC AGTTTTGTGC GTTCATTCAA ACATCTTCAT GCATTAGATG TGAACAACTA TAACGTAACG GCCGTTTCAT TTCAATAGAA 3600
ACATAAAGCA AAGCACCCTA CGCGCTGGCC AATGCCGTCC GGTTGAGGCA TACCCTAACC TGATGTCAGA TGCCATGTGT AAATTGCGTC AGGATAGGAT 3700
TGAATTTTGA ATTTATTGAC ATATCTCGTT GAAGGTCATA GAGTCTTCCC TGACATTTTG CAGGGAATTC CATGACTGGA CAGCGCATTG GGTATATCAG 3800
GGTCAGCACC TTCGACCAGA ACCCGGAACG GCAACTGGAA GGCGTCAAGG TTGATCGCGC TTTTAGCGAC AAGGCATCCG GCAAGGATGT CAAGCGTCCG 3900
CAACTGGAAG CGCTGATAAG CTTCGCCCGC ACCGGCGACA CCGTGGTGGT GCATAGCATG GATCGCCTGG CGCGCAATCT CGATGATTTG CGCCGGATCG 4000
TGCAAACGCT GACACAACGC GGCGTGCATA TCGAATTCGT CAAGGAACAC CTCAGTTTTA CTGGCGAAGA CTCTCCGATG GCGAACCTGA TGCTCTCGGT 4100
GATGGGCGCG TTCGCCGAGT TCGAGCGCGC CCTGATCCGC GAGCGTCAGC GCGAGGGTAT TGCGCTCGCC AAGCAACGCG GGGCTTACCG TGGCAGGAAG 4200
AAATCCCTGT CGTCTGAGCG TATTGCCGAA CTGCGCCAAC GTGTCGAGGC TGGCGAGCAA AAGACCAAGC TTGCTCGTGA ATTCGGAATC AGTCGCGAAA 4300
CCCTGTATCA ATACTTGAGA ACGGATCAGT AAATATGCCA CGTCGTTCCA TCCTGTCCGC CGCCGAGCGG GAAAGCCTGC TGGCGTTGCC GGACTCCAAG 4400
GACGACCTGA TCCGACATTA CACATTCAAC GATACCGACC TCTCGATCAT CCGACAGCGG CGCGGGCCAG CCAATCGGCT GGGCTTCGCG GTGCAGCTCT 4500
GTTACCTGCG CTTTCCCGGC GTCATCCTGG GCGTCGATGA ACTACCGTTC CCGCCCTTGT TGAAGCTGGT CGCCGACCAG CTCAAGGTCG GCGTCGAAAG 4600
CTGGAACGAG TACGGCCAGC GGGAGCAGAC CCGGCGCGAG CACCTGAGCG AGCTGCAAAC CGTGTTCGGT TTCCGGCCCT TCACCATGAG CCATTACCGG 4700
CAGGCCGTCC AGATGCTGAC CGAGCTGGCG ATGCAAACCG ACAAAGGCAT CGTGCTGGCC AGCGCCTTGA TCGGGCACCT GCGGCGGCAG TCGGTCATTC 4800
TGCCCGCCCT CAACGCCGTC GAGCGGGCGA GTGCCGAGGC GATCACCCGT GCTAACCGGC GCATCTACGA CGCCTTGGCC GAACCACTGG CGGACGCGCA 4900
TCGCCGCCGC CTCGACGATC TGCTCAAGCG CCGGGACAAC GGCAAGACGA CCTGGTTGGC TTGGTTGCGC CAGTCTCCGG CCAAGCCAAA TTCGCGGCAT 5000
ATGCTGGAAC ACATCGAACG CCTCAAGGCA TGGCAGGCAC TCGATCTGCC TACCGGCATC GAGCGGCTGG TTCACCAGAA CCGCCTGCTC AAGATTGCCC 5100
GCGAGGGCGG CCAGATGACA CCCGCCGACC TGGCCAAATT CGAGCCGCAA CGGCGCTACG CCACTCTCGT GGCGCTGGCC ACCGAGGGCA TGGCCACCGT 5200
CACCGACGAA ATCATCGACC TGCACGACCG CATCCTGGGT AAGCTGTTTA ACGCTGCCAA GAATAAGCAT CAGCAGCAGT TCCAGGCGTC AGGCAAGGCC 5300
ATCAACGCCA AGGTACGTCT GTACGGGCGC ATCGGTCAGG CGCTGATCGA CGCCAAGCAA TCAGGCCGCG ATGCGTTTGC CGCCATCGAG GCCGTCATGT 5400
CCTGGGATTC CTTTGCCGAG AGCGTCACCG AGGCGCAGAA GCTCGCGCAA CCCGATGACT TCGATTTCCT GCATCGCATC GGCGAGAGCT ACGCCACCCT 5500
GCGCCGCTAT GCACCGGAAT TCCTTGCCGT GCTCAAGCTG CGGGCCGCGC CCGCCGCCAA AAACGTGCTT GATGCCATTG AGGTGCTGCG CGGCATGAAC 5600
ACCGACAACG CCCGCAAGCT GCCAGCCGAT GCACCGACCG GCTTCATCAA GCCGCGCTGG CAGAAACTGG TGATGACCGA CGCCGGCATC GACCGGCGCT 5700
ACTACGAACT GTGCGCGCTG TCCGAGTTGA AGAACTCCCT GCGCTCGGGC GACATCTGGG TGCAGGGTTC ACGCCAGTTC AAGGACTTCG AGGACTACCT 5800
GGTACCGCCC GAGAAGTTCA CCAGCCTCAA GCAGTCCAGC GAATTGCCGC TGGCCGTGGC CACCGACTGC GAACAATATC TGCATGAGCG GCTGACGCTG 5900
CTGGAAGCAC AACTTGCCAC CGTCAACCGC ATGGCGGCAG CCAACGACCT GCCGGATGCC ATCATCACCG AGTCGGGCTT GAAGATCACG CCGCTGGATG 6000
CGGCGGTGCC CGACACCGCG CAGGCGCTGA TAGACCAGAC AGCCATGGTC CTGCCGCACG TCAAGATCAC CGAACTGCTG CTCGAAGTCG ATGAGTGGAC 6100
GGGCTTCACC CGGCACTTCA CGCACTTGAA ATCGGGCGAT CTGGCCAAGG ACAAGAACCT GTTGTTGACC ACGATCCTGG CCGACGCGAT CAACCTGGGC 6200
CTGACCAAGA TGGCCGAGTC CTGCCCCGGC ACGACCTACG CGAAGCTCGC TTGGCTGCAA GCCTGGCATA CCCGCGACGA AACGTACTCG ACAGCGTTGG 6300
CTGAACTGGT CAACGCTCAG TTTCGGCATC CCTTTGCCGG GCACTGGGGC GATGGCACCA CATCATCATC GGACGGACAG AATTTCCGAA CCGCTAGCAA 6400
GGCAAAGAGC ACGGGGCACA TCAACCCAAA ATATGGCAGC AGCCCAGGAC GGACTTTCTA CACCCACATC TCCGACCAAT ACGCGCCATT CCACACCAAG 6500
GTGGTCAATG TCGGCCTGCG CGACTCAACC TACGTGCTCG ACGGCCTGCT GTACCACGAA TCCGACCTGC GGATCGAGGA GCACTACACC GACACGGCGG 6600
GCTTCACCGA TCACGTCTTC GCCCTGATGC ACCTCTTGGG CTTCCGCTTC GCGCCGCGCA TCCGCGACCT GGGCGACACC AAGCTCTACA TCCCGAAGGG 6700
CGATGCCGCC TATGACGCGC TCAAGCCGAT GATCGGCGGC ACGCTCAACA TCAAGCACGT CCGCGCCCAT TGGGACGAAA TCCTGCGGCT GGCCACCTCG 6800
ATCAAGCAGG GCACGGTGAC GGCCTCGCTG ATGCTCAGGA AACTCGGCAG CTACCCGCGC CAGAACGGCT TGGCCGTCGC GCTGCGCGAG TTGGGCCGCA 6900
TCGAGCGCAC GCTGTTCATC CTCGACTGGC TGCAAAGCGT CGAGCTACGC CGCCGCGTGC ATGCCGGGCT GAACAAGGGC GAGGCGCGCA ATGCGCTGGC 7000
CCGTGCCGTG TTCTTCAACC GCCTTGGTGA AATCCGTGAC CGCAGTTTCG AGCAGCAGCG CTACCGGGCC AGCGGCCTCA ACCTGGTGAC GGCGGCCATC 7100
GTGCTGTGGA ACACGGTCTA CCTGGAGCGT GCGGCGCATG CGTTGCGCGG CAATGGTCAT GCCGTCGATG ACTCGCTATT GCAGTACCTG TCGCCACTCG 7200
GCTGGGAGCA CATCAACCTG ACCGGTGATT ACCTATGGCG CAGCAGCGCC AAGATCGGCG CGGGGAAGTT CAGGCCGCTA CGGCCTCTGC AACCGGCTTA 7300
GCGTGCTTTA TTTTCCGTTT TCTGAGACGA CCCCNGTGAC CGCAGTTTCG AGCAGCAGCG CTACCGGGCC AGCGGCCTCA ACCTGGTGAC GGCGGCCATC 7400
GTGCTGTGGA ACACGGTCTA CCTGGAGCGT GCGGCGCATG CGTTGCGCGG CAATGGTCAT GCCGTCGATG ACTCGCTATT GCAGTACCTG TCGCCACTCG 7500
GCTGGGAGCA CATCAACCTG ACCGGTGATT ACCTATGGCG CAGCAGCGCC AAGATCGGCG CGGGGAAGTT CAGGCCGCTA CGGCCTCTGC AACCGGCTTA 7600
GCGTGCTTTA TTTTCCGTTT TCTGAGACGA CCCC
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| res_site_II |
3683-3726 |
44 |
ATTGCGTCAG GATAGGATTG AATTTTGAAT TTATTGACAT ATCT |
| res_site_III |
3730-3761 |
32 |
TGAAGGTCAT AGAGTCTTCC CTGACATTTT GC |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| msf2 |
TnEcO26 |
101-778 |
Passenger Gene |
Other |
- |
| msf |
TnEcO26 |
775-1335 |
Passenger Gene |
Other |
- |
| MCR-5.1 (ARO:3004332) |
TnEcO26 |
1332-2975 |
Passenger Gene |
Antibiotic Resistance |
- |
| chrB |
TnEcO26 |
2994-3536 |
Passenger Gene |
Heavy Metal Resistance |
- |
| tnpR |
TnEcO26 |
3772-4332 |
Accessory Gene |
Resolvase |
+ |
| tnpA |
TnEcO26 |
4335-7301 |
Transposase |
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+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| msf2 |
Msf2 |
TnEcO26 |
678 |
101-778 |
- |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Comment: | permease |
Protein Sequence:
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VIPGVLAVLA FLTLVKDPEH SPNPALKFFS SLRGLPARFK RYLGAVGIFG IGDFSHSLLI LAATTLLTPS LGVIQAAQVA GLLYVWRNLV QVAVSYPVGV
LADRVGHLPV LIAGYVLGTL TAVLTALAFW LGIASVPLLA GVFFIAGLYV AVQEALESTV TAEMVQPDTL AMSYGALGTV NGAAKFISSA SVGVVWTAVS
PVVGFGLAAV LMAAGTLTLL RVKGN
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| msf |
Msf |
TnEcO26 |
561 |
775-1335 |
- |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Comment: | permease |
Protein Sequence:
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MTTSTDDPPK RWLNRTVAGA GITSSLGDFC YETTTVILPG FLAVLGIPAA VLGLIEGIAD AIAAFTKMVS GYIADKLGHR KLFVMVGYGL TPLGQVLIAL
AAGWPLLLLG RIVSWFGKGL RGPLRDAIVI QAVSPETRGR AFGFHRAADT VGAVSAPCWA SRCWVGRKAF IGATRLDPSG SYYGCR
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| MCR-5.1 (ARO:3004332) |
MCR-5.1 |
TnEcO26 |
1644 |
1332-2975 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Target: | peptide antibiotic (ARO:3000053) |
| Sequence Family: | MCR phosphoethanolamine transferase (ARO:3004268) |
| Comment: | strict match to reference sequence for ARO:3004332 (bitscore: 1127)||Synonyms: |
Protein Sequence:
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MRLSAFITFL KMRPQVRTEF LTLFISLVFT LLCNGVFWNA LLAGRDSLTS GTWLMLLCTG LLITGLQWLL LLLVATRWSV KPLLILLAVM TPAAVYFMRN
YGVYLDKAML RNLMETDVRE ASELLQWRML PYLLVAAVSV WWIARVRVLR TGWKQAVMMR SACLAGALAM ISMGLWPVMD VLIPTLRENK PLRYLITPAN
YVISGIRVLT EQASSSADEA REVVAADAHR GPQEQGRRPR ALVLVVGETV RAANWGLSGY ERQTTPELAA RDVINFSDVT SCGTDTATSL PCMFSLNGRR
DYDERQIRRR ESVLHVLNRS DVNILWRDNQ SGCKGVCDGL PFENLSSAGH PTLCHGERCL DEILLEGLAE KITTSRSDML IVLHMLGNHG PAYFQRYPAS
YRRWSPTCDT TDLASCSHEA LVNTYDNAVL YTDHVLARTI DLLSGIRSHD TALLYVSDHG ESLGEKGLYL HGIPYVIAPD EQIKVPMIWW QSSQVYADQA
CMQTHASRAP VSHDHLFHTL LGMFDVKTAA YTPELDLLAT CRKGQPQ
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| chrB |
ChrB |
TnEcO26 |
543 |
2994-3536 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Chromate |
Protein Sequence:
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MNAQNWLLLT YKVPPEPAKK RIALWRKLKG MGAVYLQNGV CLLPKTDDHT RRLKIIENEI NEMAGDSVLL ETVALDRAQE DKVIARFKAD RDEEYKELLG
KCADFEAEIA HETEVQHFTY AELEENDVDL KKLLSWLEKI AKLDFYGATL AAEAAERLKG CEALLDAYAQ RMFDAHDENR
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
TnEcO26 |
561 |
3772-4332 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | resolvase; serine site-specific recombinase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | identical to tnpR (TnAs3 ) |
Protein Sequence:
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MTGQRIGYIR VSTFDQNPER QLEGVKVDRA FSDKASGKDV KRPQLEALIS FARTGDTVVV HSMDRLARNL DDLRRIVQTL TQRGVHIEFV KEHLSFTGED
SPMANLMLSV MGAFAEFERA LIRERQREGI ALAKQRGAYR GRKKSLSSER IAELRQRVEA GEQKTKLARE FGISRETLYQ YLRTDQ
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
TnEcO26 |
2967 |
4335-7301 |
+ |
| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
| Comment: | identical to TnAs3 tnpA |
Protein Sequence:
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MPRRSILSAA ERESLLALPD SKDDLIRHYT FNDTDLSIIR QRRGPANRLG FAVQLCYLRF PGVILGVDEL PFPPLLKLVA DQLKVGVESW NEYGQREQTR
REHLSELQTV FGFRPFTMSH YRQAVQMLTE LAMQTDKGIV LASALIGHLR RQSVILPALN AVERASAEAI TRANRRIYDA LAEPLADAHR RRLDDLLKRR
DNGKTTWLAW LRQSPAKPNS RHMLEHIERL KAWQALDLPT GIERLVHQNR LLKIAREGGQ MTPADLAKFE PQRRYATLVA LATEGMATVT DEIIDLHDRI
LGKLFNAAKN KHQQQFQASG KAINAKVRLY GRIGQALIDA KQSGRDAFAA IEAVMSWDSF AESVTEAQKL AQPDDFDFLH RIGESYATLR RYAPEFLAVL
KLRAAPAAKN VLDAIEVLRG MNTDNARKLP ADAPTGFIKP RWQKLVMTDA GIDRRYYELC ALSELKNSLR SGDIWVQGSR QFKDFEDYLV PPEKFTSLKQ
SSELPLAVAT DCEQYLHERL TLLEAQLATV NRMAAANDLP DAIITESGLK ITPLDAAVPD TAQALIDQTA MVLPHVKITE LLLEVDEWTG FTRHFTHLKS
GDLAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHTRDET YSTALAELVN AQFRHPFAGH WGDGTTSSSD GQNFRTASKA KSTGHINPKY
GSSPGRTFYT HISDQYAPFH TKVVNVGLRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHLLGF RFAPRIRDLG DTKLYIPKGD AAYDALKPMI
GGTLNIKHVR AHWDEILRLA TSIKQGTVTA SLMLRKLGSY PRQNGLAVAL RELGRIERTL FILDWLQSVE LRRRVHAGLN KGEARNALAR AVFFNRLGEI
RDRSFEQQRY RASGLNLVTA AIVLWNTVYL ERAAHALRGN GHAVDDSLLQ YLSPLGWEHI NLTGDYLWRS SAKIGAGKFR PLRPLQPA
|
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| Internal Repeat Elements |
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| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| IRR int |
TnEcO26 |
7294-7334 |
GCCGAATCGC ACGAAATAAA AGGCAAAAGA CTCTGCTGGG G |
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